Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:98639857-98943830

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131 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cacnb3 15 98630840 to 98644529 13689 + protein coding gene calcium channel, voltage-dependent, beta 3 subunit
Tssr132958 15 98644052 to 98644086 34 + TSS region transcription start site region 132958
Tssr136262 15 98645245 to 98645249 4 - TSS region transcription start site region 136262
Ddx23 15 98645379 to 98662933 17554 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
Cpgi7662 15 98662451 to 98663135 684 CpG island CpG island 7662
Tssr136263 15 98662871 to 98662911 40 - TSS region transcription start site region 136263
Rnd1 15 98669205 to 98677461 8256 - protein coding gene Rho family GTPase 1
Cpgi7663 15 98676985 to 98677611 626 CpG island CpG island 7663
Tssr136264 15 98677451 to 98677467 16 - TSS region transcription start site region 136264
Gm34152 15 98691863 to 98696191 4328 - lincRNA gene predicted gene, 34152
Cpgi7664 15 98699473 to 98699993 520 CpG island CpG island 7664
Cpgi7665 15 98708091 to 98708257 166 CpG island CpG island 7665
Tssr132959 15 98708187 to 98708216 29 + TSS region transcription start site region 132959
Tssr132960 15 98708225 to 98708247 22 + TSS region transcription start site region 132960
Ccdc65 15 98708227 to 98723336 15109 + protein coding gene coiled-coil domain containing 65
Cpgi7666 15 98720729 to 98720905 176 CpG island CpG island 7666
Fkbp11 15 98724366 to 98728198 3832 - protein coding gene FK506 binding protein 11
Tssr136265 15 98727439 to 98727443 4 - TSS region transcription start site region 136265
Cpgi7667 15 98727493 to 98728200 707 CpG island CpG island 7667
Tssr136266 15 98727496 to 98727527 31 - TSS region transcription start site region 136266
Tssr136267 15 98727530 to 98727551 21 - TSS region transcription start site region 136267
Tssr136268 15 98727555 to 98727609 54 - TSS region transcription start site region 136268
Tssr136269 15 98728028 to 98728033 5 - TSS region transcription start site region 136269
Tssr136270 15 98728106 to 98728117 11 - TSS region transcription start site region 136270
Tssr136271 15 98728120 to 98728187 67 - TSS region transcription start site region 136271
Arf3 15 98737624 to 98763118 25494 - protein coding gene ADP-ribosylation factor 3
Tssr132961 15 98738417 to 98738443 26 + TSS region transcription start site region 132961
Tssr136272 15 98738718 to 98738785 67 - TSS region transcription start site region 136272
Tssr136273 15 98740154 to 98740184 30 - TSS region transcription start site region 136273
Tssr136274 15 98740240 to 98740351 111 - TSS region transcription start site region 136274
Tssr132962 15 98740252 to 98740312 60 + TSS region transcription start site region 132962
Tssr136275 15 98740366 to 98740414 48 - TSS region transcription start site region 136275
Tssr136276 15 98741375 to 98741387 12 - TSS region transcription start site region 136276
Tssr136277 15 98742611 to 98742625 14 - TSS region transcription start site region 136277
Tssr136278 15 98742645 to 98742661 16 - TSS region transcription start site region 136278
Tssr136279 15 98755067 to 98755106 39 - TSS region transcription start site region 136279
5830427D03Rik 15 98760136 to 98762051 1915 unclassified gene RIKEN cDNA 5830427D03 gene
Cpgi7668 15 98762253 to 98763587 1334 CpG island CpG island 7668
Tssr136280 15 98763136 to 98763190 54 - TSS region transcription start site region 136280
Tssr136281 15 98763195 to 98763220 25 - TSS region transcription start site region 136281
Tssr136282 15 98763227 to 98763238 11 - TSS region transcription start site region 136282
Wnt10b 15 98770712 to 98778150 7438 - protein coding gene wingless-type MMTV integration site family, member 10B
Cpgi7669 15 98772355 to 98773032 677 CpG island CpG island 7669
Cpgi7670 15 98776002 to 98778593 2591 CpG island CpG island 7670
Tssr136283 15 98778528 to 98778541 13 - TSS region transcription start site region 136283
Tssr136284 15 98778545 to 98778568 23 - TSS region transcription start site region 136284
Cpgi7671 15 98778968 to 98779129 161 CpG island CpG island 7671
Cpgi7672 15 98789309 to 98790353 1044 CpG island CpG island 7672
Tssr132963 15 98789839 to 98789850 11 + TSS region transcription start site region 132963
Wnt1 15 98789857 to 98793830 3973 + protein coding gene wingless-type MMTV integration site family, member 1
Tssr132964 15 98790000 to 98790017 17 + TSS region transcription start site region 132964
Cpgi7673 15 98790735 to 98793222 2487 CpG island CpG island 7673
Cpgi7674 15 98797980 to 98798223 243 CpG island CpG island 7674
Ddn 15 98803782 to 98807925 4143 - protein coding gene dendrin
Tssr136285 15 98803800 to 98803804 4 - TSS region transcription start site region 136285
Cpgi7675 15 98804051 to 98804578 527 CpG island CpG island 7675
Tssr136286 15 98804090 to 98804114 24 - TSS region transcription start site region 136286
Cpgi7676 15 98805062 to 98808362 3300 CpG island CpG island 7676
B130046B21Rik 15 98807024 to 98816077 9053 + antisense lncRNA gene RIKEN cDNA B130046B21 gene
Tssr136287 15 98807890 to 98807908 18 - TSS region transcription start site region 136287
Tssr136288 15 98807910 to 98807932 22 - TSS region transcription start site region 136288
Tssr136289 15 98807940 to 98807956 16 - TSS region transcription start site region 136289
Tssr136290 15 98807962 to 98807976 14 - TSS region transcription start site region 136290
Tssr136291 15 98807995 to 98808002 7 - TSS region transcription start site region 136291
Tssr136292 15 98808306 to 98808318 12 - TSS region transcription start site region 136292
Tssr136293 15 98809487 to 98809492 5 - TSS region transcription start site region 136293
Prkag1 15 98812797 to 98831508 18711 - protein coding gene protein kinase, AMP-activated, gamma 1 non-catalytic subunit
Cpgi7677 15 98830743 to 98831673 930 CpG island CpG island 7677
Tssr132965 15 98830853 to 98830865 12 + TSS region transcription start site region 132965
Tssr136294 15 98831316 to 98831358 42 - TSS region transcription start site region 136294
Tssr136295 15 98831436 to 98831450 14 - TSS region transcription start site region 136295
Tssr136296 15 98831452 to 98831488 36 - TSS region transcription start site region 136296
Tssr136297 15 98831498 to 98831509 11 - TSS region transcription start site region 136297
Kmt2d 15 98831669 to 98871204 39535 - protein coding gene lysine (K)-specific methyltransferase 2D
Tssr136298 15 98832103 to 98832107 4 - TSS region transcription start site region 136298
Tssr136299 15 98832475 to 98832480 5 - TSS region transcription start site region 136299
Tssr132966 15 98835950 to 98835952 2 + TSS region transcription start site region 132966
Tssr136300 15 98845603 to 98845629 26 - TSS region transcription start site region 136300
Tssr136301 15 98845729 to 98845743 14 - TSS region transcription start site region 136301
Tssr136302 15 98845760 to 98845772 12 - TSS region transcription start site region 136302
Tssr136303 15 98845779 to 98845794 15 - TSS region transcription start site region 136303
Tssr136304 15 98846128 to 98846146 18 - TSS region transcription start site region 136304
Tssr136305 15 98846174 to 98846199 25 - TSS region transcription start site region 136305
Tssr136306 15 98846295 to 98846309 14 - TSS region transcription start site region 136306
Tssr136307 15 98862904 to 98862918 14 - TSS region transcription start site region 136307
Tssr136308 15 98863937 to 98863960 23 - TSS region transcription start site region 136308
Tssr136309 15 98863988 to 98864007 19 - TSS region transcription start site region 136309
Tssr136310 15 98867423 to 98867434 11 - TSS region transcription start site region 136310
Cpgi7678 15 98870821 to 98872587 1766 CpG island CpG island 7678
Tssr132967 15 98871015 to 98871046 31 + TSS region transcription start site region 132967
Tssr136311 15 98871175 to 98871187 12 - TSS region transcription start site region 136311
Tssr136312 15 98871966 to 98872003 37 - TSS region transcription start site region 136312
Tssr136313 15 98872158 to 98872184 26 - TSS region transcription start site region 136313
Tssr136314 15 98872186 to 98872233 47 - TSS region transcription start site region 136314
Gm49437 15 98872329 to 98872613 284 - unclassified gene predicted gene, 49437
5730414N17Rik 15 98872644 to 98874082 1438 + lincRNA gene RIKEN cDNA 5730414N17 gene
Rhebl1 15 98877760 to 98881497 3737 - protein coding gene Ras homolog enriched in brain like 1
Cpgi7679 15 98880851 to 98881587 736 CpG island CpG island 7679
Tssr136315 15 98881220 to 98881240 20 - TSS region transcription start site region 136315
Tssr136316 15 98881255 to 98881316 61 - TSS region transcription start site region 136316
Tssr136317 15 98881361 to 98881381 20 - TSS region transcription start site region 136317
Tssr136318 15 98881388 to 98881410 22 - TSS region transcription start site region 136318
Dhh 15 98891152 to 98898540 7388 - protein coding gene desert hedgehog
Tssr136319 15 98892188 to 98892192 4 - TSS region transcription start site region 136319
Gm49442 15 98893351 to 98895175 1824 + antisense lncRNA gene predicted gene, 49442
Cpgi7680 15 98893352 to 98895280 1928 CpG island CpG island 7680
Tssr136320 15 98895411 to 98895432 21 - TSS region transcription start site region 136320
Cpgi7681 15 98895442 to 98896001 559 CpG island CpG island 7681
Cpgi7682 15 98897632 to 98898566 934 CpG island CpG island 7682
Tssr136321 15 98898458 to 98898467 9 - TSS region transcription start site region 136321
Tssr136322 15 98898483 to 98898558 75 - TSS region transcription start site region 136322
Lmbr1l 15 98903917 to 98918231 14314 - protein coding gene limb region 1 like
Cpgi7683 15 98917235 to 98918450 1215 CpG island CpG island 7683
Tssr132968 15 98917651 to 98917698 47 + TSS region transcription start site region 132968
Tssr136323 15 98918014 to 98918103 89 - TSS region transcription start site region 136323
Tssr136324 15 98918131 to 98918142 11 - TSS region transcription start site region 136324
D15Mit148 15 98927666 to 98927809 143 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 148
Tuba1b 15 98931427 to 98934560 3133 - protein coding gene tubulin, alpha 1B
Gm49450 15 98932137 to 98953551 21414 - protein coding gene predicted gene, 49450
Cpgi7684 15 98933740 to 98934941 1201 CpG island CpG island 7684
Tssr136325 15 98933922 to 98933937 15 - TSS region transcription start site region 136325
Gm41396 15 98934325 to 98940553 6228 + antisense lncRNA gene predicted gene, 41396
Tssr136326 15 98934438 to 98934444 6 - TSS region transcription start site region 136326
Tssr136327 15 98934447 to 98934505 58 - TSS region transcription start site region 136327
Tssr136328 15 98934522 to 98934586 64 - TSS region transcription start site region 136328
Tssr136329 15 98934602 to 98934612 10 - TSS region transcription start site region 136329
Tssr132969 15 98934626 to 98934689 63 + TSS region transcription start site region 132969
Tssr136330 15 98937327 to 98937351 24 - TSS region transcription start site region 136330
Tssr136331 15 98937355 to 98937386 31 - TSS region transcription start site region 136331
Tssr136332 15 98937388 to 98937413 25 - TSS region transcription start site region 136332
Gm49449 15 98942550 to 98943665 1115 + unclassified gene predicted gene, 49449