Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:97673688-100233699

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819 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cal5 15 94974879 to 99363692 4388813 heritable phenotypic marker caracul like 5
Rpap3 15 97675097 to 97705822 30725 - protein coding gene RNA polymerase II associated protein 3
Tssr136119 15 97680447 to 97680471 24 - TSS region transcription start site region 136119
Tssr136120 15 97680472 to 97680483 11 - TSS region transcription start site region 136120
Cpgi7625 15 97705193 to 97706058 865 CpG island CpG island 7625
Tssr136121 15 97705787 to 97705842 55 - TSS region transcription start site region 136121
Endou 15 97711015 to 97731339 20324 - protein coding gene endonuclease, polyU-specific
Tssr132877 15 97718711 to 97718728 17 + TSS region transcription start site region 132877
Tssr132878 15 97718735 to 97718747 12 + TSS region transcription start site region 132878
Tssr136122 15 97719587 to 97719619 32 - TSS region transcription start site region 136122
Tssr136123 15 97719680 to 97719693 13 - TSS region transcription start site region 136123
Tssr136124 15 97719732 to 97719743 11 - TSS region transcription start site region 136124
Tssr136125 15 97720443 to 97720448 5 - TSS region transcription start site region 136125
Tssr136126 15 97721103 to 97721110 7 - TSS region transcription start site region 136126
Tssr136127 15 97721111 to 97721170 59 - TSS region transcription start site region 136127
Tssr132879 15 97729412 to 97729455 43 + TSS region transcription start site region 132879
Tssr136128 15 97730709 to 97730729 20 - TSS region transcription start site region 136128
Tssr136129 15 97731159 to 97731168 9 - TSS region transcription start site region 136129
Tssr136130 15 97731201 to 97731213 12 - TSS region transcription start site region 136130
Tssr136131 15 97731214 to 97731226 12 - TSS region transcription start site region 136131
Tssr132880 15 97731274 to 97731278 4 + TSS region transcription start site region 132880
Tssr136132 15 97731295 to 97731307 12 - TSS region transcription start site region 136132
Tssr136133 15 97731327 to 97731346 19 - TSS region transcription start site region 136133
Tssr136134 15 97731381 to 97731393 12 - TSS region transcription start site region 136134
Tssr136135 15 97731410 to 97731435 25 - TSS region transcription start site region 136135
Tssr136136 15 97731457 to 97731475 18 - TSS region transcription start site region 136136
Tssr136137 15 97731513 to 97731524 11 - TSS region transcription start site region 136137
Tssr136138 15 97731532 to 97731546 14 - TSS region transcription start site region 136138
Tssr136139 15 97731634 to 97731643 9 - TSS region transcription start site region 136139
Gm33531 15 97739158 to 97745892 6734 + lncRNA gene predicted gene, 33531
Tssr132881 15 97741017 to 97741025 8 + TSS region transcription start site region 132881
Rapgef3 15 97744770 to 97767972 23202 - protein coding gene Rap guanine nucleotide exchange factor (GEF) 3
Cpgi7626 15 97746825 to 97747247 422 CpG island CpG island 7626
Tssr136140 15 97748502 to 97748521 19 - TSS region transcription start site region 136140
Tssr136141 15 97748552 to 97748579 27 - TSS region transcription start site region 136141
Tssr136142 15 97749743 to 97749765 22 - TSS region transcription start site region 136142
Tssr136143 15 97749785 to 97749797 12 - TSS region transcription start site region 136143
Gm10835 15 97749860 to 97751154 1294 unclassified gene predicted gene 10835
Tssr136144 15 97749999 to 97750015 16 - TSS region transcription start site region 136144
Tssr136145 15 97750707 to 97750737 30 - TSS region transcription start site region 136145
Tssr136146 15 97750765 to 97750774 9 - TSS region transcription start site region 136146
Tssr136147 15 97750885 to 97750913 28 - TSS region transcription start site region 136147
Rapgef3os1 15 97760408 to 97766961 6553 + antisense lncRNA gene Rap guanine nucleotide exchange factor (GEF) 3, opposite strand 1
Cpgi7627 15 97766751 to 97767335 584 CpG island CpG island 7627
Tssr136148 15 97767050 to 97767073 23 - TSS region transcription start site region 136148
Tssr136149 15 97767244 to 97767283 39 - TSS region transcription start site region 136149
Tssr136150 15 97767510 to 97767576 66 - TSS region transcription start site region 136150
Cpgi7628 15 97767638 to 97768543 905 CpG island CpG island 7628
Tssr136151 15 97767644 to 97767679 35 - TSS region transcription start site region 136151
Tssr136152 15 97767680 to 97767703 23 - TSS region transcription start site region 136152
Tssr136153 15 97767708 to 97767719 11 - TSS region transcription start site region 136153
Rapgef3os2 15 97767827 to 97768837 1010 + antisense lncRNA gene Rap guanine nucleotide exchange factor (GEF) 3, opposite strand 2
Tssr136154 15 97767881 to 97767930 49 - TSS region transcription start site region 136154
Gm46535 15 97769963 to 97775766 5803 - lncRNA gene predicted gene, 46535
Tssr136155 15 97770189 to 97770200 11 - TSS region transcription start site region 136155
Tssr136156 15 97770210 to 97770232 22 - TSS region transcription start site region 136156
Tssr132882 15 97782187 to 97782194 7 + TSS region transcription start site region 132882
Tssr132883 15 97782195 to 97782206 11 + TSS region transcription start site region 132883
Cpgi7629 15 97784164 to 97785124 960 CpG island CpG island 7629
Tssr132884 15 97784365 to 97784457 92 + TSS region transcription start site region 132884
Slc48a1 15 97784365 to 97792692 8327 + protein coding gene solute carrier family 48 (heme transporter), member 1
Tssr132885 15 97784463 to 97784466 3 + TSS region transcription start site region 132885
Tssr132886 15 97784467 to 97784475 8 + TSS region transcription start site region 132886
Tssr4706 15 97784511 to 97784532 21 + TSS region transcription start site region 4706
Tssr132887 15 97786890 to 97786929 39 + TSS region transcription start site region 132887
Tssr136157 15 97786956 to 97786963 7 - TSS region transcription start site region 136157
Tssr132888 15 97787624 to 97787642 18 + TSS region transcription start site region 132888
Tssr132889 15 97788113 to 97788119 6 + TSS region transcription start site region 132889
Tssr132890 15 97789228 to 97789261 33 + TSS region transcription start site region 132890
Cpgi7630 15 97789932 to 97790101 169 CpG island CpG island 7630
Tssr132891 15 97790878 to 97790957 79 + TSS region transcription start site region 132891
Tssr132892 15 97790993 to 97791007 14 + TSS region transcription start site region 132892
Tssr132893 15 97791194 to 97791210 16 + TSS region transcription start site region 132893
Tssr132894 15 97791301 to 97791331 30 + TSS region transcription start site region 132894
Tssr136158 15 97791324 to 97791354 30 - TSS region transcription start site region 136158
Tssr136159 15 97791371 to 97791418 47 - TSS region transcription start site region 136159
Tssr136160 15 97791450 to 97791471 21 - TSS region transcription start site region 136160
Tssr132895 15 97791473 to 97791493 20 + TSS region transcription start site region 132895
Tssr132896 15 97791542 to 97791576 34 + TSS region transcription start site region 132896
Hdac7 15 97792664 to 97844502 51838 - protein coding gene histone deacetylase 7
Cpgi7631 15 97802254 to 97802760 506 CpG island CpG island 7631
Tssr136161 15 97803763 to 97803776 13 - TSS region transcription start site region 136161
Tssr136162 15 97808415 to 97808431 16 - TSS region transcription start site region 136162
Tssr136163 15 97812251 to 97812268 17 - TSS region transcription start site region 136163
Tssr136164 15 97814830 to 97814878 48 - TSS region transcription start site region 136164
Tssr136165 15 97820986 to 97821022 36 - TSS region transcription start site region 136165
Tssr132897 15 97821760 to 97821776 16 + TSS region transcription start site region 132897
Tssr136166 15 97823628 to 97823640 12 - TSS region transcription start site region 136166
Tssr136167 15 97823659 to 97823671 12 - TSS region transcription start site region 136167
Tssr136168 15 97823686 to 97823706 20 - TSS region transcription start site region 136168
Tssr136169 15 97824786 to 97824791 5 - TSS region transcription start site region 136169
Cpgi7632 15 97825260 to 97825441 181 CpG island CpG island 7632
Cpgi7633 15 97830364 to 97832192 1828 CpG island CpG island 7633
Gm33636 15 97831245 to 97842389 11144 + lncRNA gene predicted gene, 33636
Tssr136170 15 97831460 to 97831519 59 - TSS region transcription start site region 136170
Tssr136171 15 97831537 to 97831580 43 - TSS region transcription start site region 136171
Tssr132898 15 97831627 to 97831674 47 + TSS region transcription start site region 132898
Tssr132899 15 97842725 to 97842749 24 + TSS region transcription start site region 132899
Tssr132900 15 97843674 to 97843698 24 + TSS region transcription start site region 132900
Tssr136172 15 97844234 to 97844245 11 - TSS region transcription start site region 136172
Tssr136173 15 97844254 to 97844318 64 - TSS region transcription start site region 136173
Tssr136174 15 97844912 to 97844935 23 - TSS region transcription start site region 136174
Gm33690 15 97847467 to 97872854 25387 + lncRNA gene predicted gene, 33690
Cpgi7634 15 97849443 to 97849718 275 CpG island CpG island 7634
Tssr132901 15 97854424 to 97854434 10 + TSS region transcription start site region 132901
Vdr 15 97854427 to 97908296 53869 - protein coding gene vitamin D (1,25-dihydroxyvitamin D3) receptor
Tssr136175 15 97856095 to 97856104 9 - TSS region transcription start site region 136175
Tssr136176 15 97856625 to 97856665 40 - TSS region transcription start site region 136176
Tssr136177 15 97856807 to 97856832 25 - TSS region transcription start site region 136177
Tssr136178 15 97856966 to 97856977 11 - TSS region transcription start site region 136178
Tssr136179 15 97857535 to 97857562 27 - TSS region transcription start site region 136179
Tssr136180 15 97858893 to 97858903 10 - TSS region transcription start site region 136180
Tssr136181 15 97859240 to 97859253 13 - TSS region transcription start site region 136181
Cpgi7635 15 97863438 to 97863753 315 CpG island CpG island 7635
Tssr136182 15 97867197 to 97867220 23 - TSS region transcription start site region 136182
Tssr132902 15 97869366 to 97869388 22 + TSS region transcription start site region 132902
Tssr136183 15 97869371 to 97869382 11 - TSS region transcription start site region 136183
Cpgi7636 15 97869629 to 97869789 160 CpG island CpG island 7636
Tssr132903 15 97869646 to 97869684 38 + TSS region transcription start site region 132903
Tssr132904 15 97869766 to 97869775 9 + TSS region transcription start site region 132904
Tssr136184 15 97884926 to 97884945 19 - TSS region transcription start site region 136184
Cpgi7637 15 97907830 to 97908860 1030 CpG island CpG island 7637
Tssr136185 15 97908261 to 97908316 55 - TSS region transcription start site region 136185
Tssr132905 15 97908408 to 97908436 28 + TSS region transcription start site region 132905
Tssr136186 15 97910602 to 97910617 15 - TSS region transcription start site region 136186
Tssr136187 15 97910622 to 97910641 19 - TSS region transcription start site region 136187
Gm22202 15 97935285 to 97935595 310 + unclassified non-coding RNA gene predicted gene, 22202
D15Mit193 15 97941759 to 97941887 128 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 193
D15Mit149 15 97941786 to 97941909 123 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 149
D15Jpk1 15 97943148 to 97943310 162 DNA segment DNA segment, Chr 15, Japan, Kominami 1
Cpgi7638 15 97963742 to 97964884 1142 CpG island CpG island 7638
Tssr136188 15 97964034 to 97964077 43 - TSS region transcription start site region 136188
Tmem106c 15 97964200 to 97970275 6075 + protein coding gene transmembrane protein 106C
Tssr132906 15 97964220 to 97964271 51 + TSS region transcription start site region 132906
Tssr132907 15 97964277 to 97964306 29 + TSS region transcription start site region 132907
Tssr132908 15 97964311 to 97964326 15 + TSS region transcription start site region 132908
Tssr132909 15 97969814 to 97969833 19 + TSS region transcription start site region 132909
Col2a1 15 97975602 to 98004695 29093 - protein coding gene collagen, type II, alpha 1
Tssr132910 15 97975603 to 97975630 27 + TSS region transcription start site region 132910
Tssr136189 15 97975668 to 97975687 19 - TSS region transcription start site region 136189
Tssr136190 15 97975699 to 97975717 18 - TSS region transcription start site region 136190
Tssr136191 15 97975912 to 97975921 9 - TSS region transcription start site region 136191
Tssr136192 15 97976018 to 97976051 33 - TSS region transcription start site region 136192
Tssr136193 15 97976060 to 97976068 8 - TSS region transcription start site region 136193
Tssr136194 15 97976108 to 97976119 11 - TSS region transcription start site region 136194
Tssr136195 15 97976124 to 97976142 18 - TSS region transcription start site region 136195
Tssr136196 15 97976143 to 97976154 11 - TSS region transcription start site region 136196
Tssr136197 15 97976156 to 97976172 16 - TSS region transcription start site region 136197
Tssr136198 15 97976678 to 97976696 18 - TSS region transcription start site region 136198
Tssr136199 15 97976724 to 97976735 11 - TSS region transcription start site region 136199
Tssr136200 15 97976742 to 97976760 18 - TSS region transcription start site region 136200
Tssr136201 15 97976798 to 97976816 18 - TSS region transcription start site region 136201
Tssr136202 15 97976852 to 97976878 26 - TSS region transcription start site region 136202
Tssr4707 15 97976888 to 97976895 7 - TSS region transcription start site region 4707
Tssr136203 15 97977277 to 97977301 24 - TSS region transcription start site region 136203
Tssr136204 15 97977370 to 97977389 19 - TSS region transcription start site region 136204
Tssr136205 15 97977833 to 97977847 14 - TSS region transcription start site region 136205
Tssr136206 15 97977872 to 97977888 16 - TSS region transcription start site region 136206
Tssr136207 15 97977902 to 97977920 18 - TSS region transcription start site region 136207
Tssr4708 15 97979212 to 97979239 27 + TSS region transcription start site region 4708
Tssr132911 15 97984186 to 97984188 2 + TSS region transcription start site region 132911
D15Mit41 15 97987052 to 97987160 108 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 41
Cia37 15 97987052 to 97987160 108 QTL collagen induced arthritis QTL 37
Pgia9 15 97987052 to 97987160 108 QTL proteoglycan induced arthritis 9
D15Mit43 15 97990574 to 97990774 200 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 43
Tssr4709 15 97995601 to 97995603 2 - TSS region transcription start site region 4709
Tssr4710 15 97995624 to 97995635 11 - TSS region transcription start site region 4710
Gm46536 15 97996153 to 97997674 1521 + lncRNA gene predicted gene, 46536
Tssr136208 15 97997590 to 97997597 7 - TSS region transcription start site region 136208
Cpgi7639 15 97999660 to 97999979 319 CpG island CpG island 7639
Cpgi7640 15 98001704 to 98002405 701 CpG island CpG island 7640
Cpgi7641 15 98003149 to 98003334 185 CpG island CpG island 7641
Cpgi7642 15 98003614 to 98003953 339 CpG island CpG island 7642
Cpgi7643 15 98004145 to 98005060 915 CpG island CpG island 7643
Tssr136209 15 98004634 to 98004652 18 - TSS region transcription start site region 136209
Tssr136210 15 98004666 to 98004682 16 - TSS region transcription start site region 136210
Tssr136211 15 98004699 to 98004708 9 - TSS region transcription start site region 136211
Tssr132912 15 98004749 to 98004751 2 + TSS region transcription start site region 132912
Gm41395 15 98029216 to 98036849 7633 - lncRNA gene predicted gene, 41395
Senp1 15 98038744 to 98093744 55000 - protein coding gene SUMO1/sentrin specific peptidase 1
Gm25668 15 98069752 to 98069880 128 + snoRNA gene predicted gene, 25668
Tssr136212 15 98074285 to 98074289 4 - TSS region transcription start site region 136212
Tssr136213 15 98085581 to 98085586 5 - TSS region transcription start site region 136213
Tssr132913 15 98092569 to 98092603 34 + TSS region transcription start site region 132913
Pfkm 15 98092589 to 98132447 39858 + protein coding gene phosphofructokinase, muscle
Cpgi7644 15 98092613 to 98093818 1205 CpG island CpG island 7644
Tssr136214 15 98093088 to 98093137 49 - TSS region transcription start site region 136214
Gm26513 15 98093101 to 98093574 473 + antisense lncRNA gene predicted gene, 26513
Tssr136215 15 98093245 to 98093260 15 - TSS region transcription start site region 136215
Tssr136216 15 98093274 to 98093294 20 - TSS region transcription start site region 136216
Tssr136217 15 98093297 to 98093324 27 - TSS region transcription start site region 136217
Tssr136218 15 98093329 to 98093410 81 - TSS region transcription start site region 136218
Tssr132914 15 98093418 to 98093514 96 + TSS region transcription start site region 132914
Tssr136219 15 98093530 to 98093543 13 - TSS region transcription start site region 136219
Tssr132915 15 98093670 to 98093681 11 + TSS region transcription start site region 132915
Tssr136220 15 98098672 to 98098677 5 - TSS region transcription start site region 136220
Cpgi7645 15 98108384 to 98109042 658 CpG island CpG island 7645
Tssr132916 15 98108453 to 98108464 11 + TSS region transcription start site region 132916
Tssr132917 15 98108465 to 98108481 16 + TSS region transcription start site region 132917
Tssr132918 15 98108482 to 98108499 17 + TSS region transcription start site region 132918