Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:96998936-97748948

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134 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc38a4 15 96994823 to 97055956 61133 - protein coding gene solute carrier family 38, member 4
Tssr136081 15 97008682 to 97008688 6 - TSS region transcription start site region 136081
Tssr136082 15 97008700 to 97008716 16 - TSS region transcription start site region 136082
Tssr136083 15 97008725 to 97008744 19 - TSS region transcription start site region 136083
Tssr136084 15 97008897 to 97008908 11 - TSS region transcription start site region 136084
Tssr136085 15 97008986 to 97009007 21 - TSS region transcription start site region 136085
Tssr136086 15 97010140 to 97010160 20 - TSS region transcription start site region 136086
Tssr136087 15 97010189 to 97010201 12 - TSS region transcription start site region 136087
D15Mit161 15 97011059 to 97011157 98 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 161
Imrfq2 15 97011059 to 97011157 98 QTL immune response to Factor IX QTL 2
D15Mit161.1 15 97011163 to 97011289 126 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 161.1
Tssr136088 15 97013475 to 97013495 20 - TSS region transcription start site region 136088
Tssr136089 15 97013564 to 97013575 11 - TSS region transcription start site region 136089
Tssr136090 15 97013585 to 97013608 23 - TSS region transcription start site region 136090
Tssr136091 15 97013681 to 97013687 6 - TSS region transcription start site region 136091
Tssr136092 15 97019470 to 97019482 12 - TSS region transcription start site region 136092
Tssr136093 15 97019527 to 97019538 11 - TSS region transcription start site region 136093
Tssr136094 15 97019840 to 97019847 7 - TSS region transcription start site region 136094
Tssr136095 15 97019878 to 97019883 5 - TSS region transcription start site region 136095
Tssr136096 15 97019891 to 97019902 11 - TSS region transcription start site region 136096
Tssr136097 15 97019924 to 97019937 13 - TSS region transcription start site region 136097
Tssr136098 15 97019940 to 97019972 32 - TSS region transcription start site region 136098
Tssr136099 15 97020079 to 97020086 7 - TSS region transcription start site region 136099
Tssr136100 15 97020323 to 97020336 13 - TSS region transcription start site region 136100
Tssr136101 15 97020343 to 97020358 15 - TSS region transcription start site region 136101
Tssr136102 15 97029274 to 97029277 3 - TSS region transcription start site region 136102
Tssr136103 15 97031205 to 97031221 16 - TSS region transcription start site region 136103
Gm32840 15 97039238 to 97106904 67666 + lncRNA gene predicted gene, 32840
Tssr132850 15 97044171 to 97044189 18 + TSS region transcription start site region 132850
Tssr136104 15 97050083 to 97050099 16 - TSS region transcription start site region 136104
Cpgi7612 15 97054392 to 97055199 807 CpG island CpG island 7612
Tssr136105 15 97055886 to 97055907 21 - TSS region transcription start site region 136105
Tssr136106 15 97055942 to 97055964 22 - TSS region transcription start site region 136106
Gm32789 15 97067187 to 97069320 2133 + lncRNA gene predicted gene, 32789
Gm32733 15 97102525 to 97107514 4989 - lncRNA gene predicted gene, 32733
Gm32885 15 97157117 to 97167278 10161 - lincRNA gene predicted gene, 32885
Gm33149 15 97162092 to 97173903 11811 + lncRNA gene predicted gene, 33149
Tssr136107 15 97167231 to 97167250 19 - TSS region transcription start site region 136107
Tssr136108 15 97167260 to 97167267 7 - TSS region transcription start site region 136108
Cpgi7613 15 97173383 to 97173621 238 CpG island CpG island 7613
Gm33253 15 97183012 to 97191329 8317 + lncRNA gene predicted gene, 33253
Gm33205 15 97187415 to 97203772 16357 - lncRNA gene predicted gene, 33205
D15Mit218 15 97234186 to 97234292 106 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 218
Cpgi7614 15 97235689 to 97235862 173 CpG island CpG island 7614
Amigo2 15 97244125 to 97247287 3162 - protein coding gene adhesion molecule with Ig like domain 2
Cpgi7615 15 97245213 to 97245591 378 CpG island CpG island 7615
Tssr132851 15 97245677 to 97245686 9 + TSS region transcription start site region 132851
Cpgi7616 15 97246172 to 97248059 1887 CpG island CpG island 7616
Tssr132852 15 97246958 to 97247004 46 + TSS region transcription start site region 132852
Tssr132853 15 97247011 to 97247052 41 + TSS region transcription start site region 132853
Pced1b 15 97247107 to 97385680 138573 + protein coding gene PC-esterase domain containing 1B
Tssr136109 15 97247242 to 97247257 15 - TSS region transcription start site region 136109
Tssr136110 15 97247306 to 97247315 9 - TSS region transcription start site region 136110
Tssr132854 15 97247391 to 97247448 57 + TSS region transcription start site region 132854
Cpgi7617 15 97253704 to 97254086 382 CpG island CpG island 7617
Gm4383 15 97302352 to 97302974 622 - pseudogene predicted gene 4383
Cpgi7618 15 97323422 to 97324041 619 CpG island CpG island 7618
Gm33325 15 97338169 to 97357453 19284 - lncRNA gene predicted gene, 33325
Tssr136111 15 97338486 to 97338492 6 - TSS region transcription start site region 136111
Cpgi7619 15 97361006 to 97361323 317 CpG island CpG island 7619
Tssr132855 15 97361134 to 97361155 21 + TSS region transcription start site region 132855
Tssr132856 15 97361180 to 97361225 45 + TSS region transcription start site region 132856
Tssr132857 15 97361266 to 97361284 18 + TSS region transcription start site region 132857
Tssr136112 15 97369279 to 97369288 9 - TSS region transcription start site region 136112
Tssr132858 15 97373370 to 97373384 14 + TSS region transcription start site region 132858
Tssr132859 15 97373388 to 97373402 14 + TSS region transcription start site region 132859
Tssr132860 15 97373409 to 97373422 13 + TSS region transcription start site region 132860
Tssr136113 15 97373883 to 97373895 12 - TSS region transcription start site region 136113
Tssr132861 15 97373936 to 97373948 12 + TSS region transcription start site region 132861
Tssr132862 15 97373979 to 97373988 9 + TSS region transcription start site region 132862
Tssr132863 15 97374012 to 97374036 24 + TSS region transcription start site region 132863
Tssr132864 15 97374046 to 97374059 13 + TSS region transcription start site region 132864
Tssr132865 15 97374199 to 97374206 7 + TSS region transcription start site region 132865
Tssr132866 15 97376688 to 97376702 14 + TSS region transcription start site region 132866
Cpgi7620 15 97376840 to 97377311 471 CpG island CpG island 7620
Tssr132867 15 97377158 to 97377175 17 + TSS region transcription start site region 132867
Tssr132868 15 97377180 to 97377196 16 + TSS region transcription start site region 132868
Tssr132869 15 97383958 to 97383972 14 + TSS region transcription start site region 132869
Tssr132870 15 97384596 to 97384633 37 + TSS region transcription start site region 132870
Tssr132871 15 97385450 to 97385454 4 + TSS region transcription start site region 132871
Gm41393 15 97393950 to 97406961 13011 - lncRNA gene predicted gene, 41393
Cosz3 15 97415753 to 97415885 132 QTL cocaine seizure 3
D15Mit48 15 97415753 to 97415885 132 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 48
5830453K13Rik 15 97423892 to 97425614 1722 unclassified gene RIKEN cDNA 5830453K13 gene
Tssr132872 15 97424556 to 97424572 16 + TSS region transcription start site region 132872
Tssr132873 15 97424599 to 97424606 7 + TSS region transcription start site region 132873
Tssr132874 15 97467217 to 97467221 4 + TSS region transcription start site region 132874
Tssr136114 15 97469267 to 97469276 9 - TSS region transcription start site region 136114
Cpgi7621 15 97469306 to 97469464 158 CpG island CpG island 7621
Tssr136115 15 97469706 to 97469733 27 - TSS region transcription start site region 136115
Tssr132875 15 97471739 to 97471748 9 + TSS region transcription start site region 132875
Gm49506 15 97557791 to 97558290 499 - pseudogene predicted gene, 49506
Tssr132876 15 97572277 to 97572281 4 + TSS region transcription start site region 132876
Tssr136116 15 97595401 to 97595410 9 - TSS region transcription start site region 136116
Tssr136117 15 97596259 to 97596265 6 - TSS region transcription start site region 136117
Gm41394 15 97611210 to 97618153 6943 - lncRNA gene predicted gene, 41394
Cpgi7622 15 97648270 to 97648488 218 CpG island CpG island 7622
Cpgi7623 15 97658514 to 97658791 277 CpG island CpG island 7623
Cpgi7624 15 97663870 to 97664247 377 CpG island CpG island 7624
Tssr136118 15 97665896 to 97665917 21 - TSS region transcription start site region 136118
Rpap3 15 97675097 to 97705822 30725 - protein coding gene RNA polymerase II associated protein 3
Tssr136119 15 97680447 to 97680471 24 - TSS region transcription start site region 136119
Tssr136120 15 97680472 to 97680483 11 - TSS region transcription start site region 136120
Cpgi7625 15 97705193 to 97706058 865 CpG island CpG island 7625
Tssr136121 15 97705787 to 97705842 55 - TSS region transcription start site region 136121
Endou 15 97711015 to 97731339 20324 - protein coding gene endonuclease, polyU-specific
Tssr132877 15 97718711 to 97718728 17 + TSS region transcription start site region 132877
Tssr132878 15 97718735 to 97718747 12 + TSS region transcription start site region 132878
Tssr136122 15 97719587 to 97719619 32 - TSS region transcription start site region 136122
Tssr136123 15 97719680 to 97719693 13 - TSS region transcription start site region 136123
Tssr136124 15 97719732 to 97719743 11 - TSS region transcription start site region 136124
Tssr136125 15 97720443 to 97720448 5 - TSS region transcription start site region 136125
Tssr136126 15 97721103 to 97721110 7 - TSS region transcription start site region 136126
Tssr136127 15 97721111 to 97721170 59 - TSS region transcription start site region 136127
Tssr132879 15 97729412 to 97729455 43 + TSS region transcription start site region 132879
Tssr136128 15 97730709 to 97730729 20 - TSS region transcription start site region 136128
Tssr136129 15 97731159 to 97731168 9 - TSS region transcription start site region 136129
Tssr136130 15 97731201 to 97731213 12 - TSS region transcription start site region 136130
Tssr136131 15 97731214 to 97731226 12 - TSS region transcription start site region 136131
Tssr132880 15 97731274 to 97731278 4 + TSS region transcription start site region 132880
Tssr136132 15 97731295 to 97731307 12 - TSS region transcription start site region 136132
Tssr136133 15 97731327 to 97731346 19 - TSS region transcription start site region 136133
Tssr136134 15 97731381 to 97731393 12 - TSS region transcription start site region 136134
Tssr136135 15 97731410 to 97731435 25 - TSS region transcription start site region 136135
Tssr136136 15 97731457 to 97731475 18 - TSS region transcription start site region 136136
Tssr136137 15 97731513 to 97731524 11 - TSS region transcription start site region 136137
Tssr136138 15 97731532 to 97731546 14 - TSS region transcription start site region 136138
Tssr136139 15 97731634 to 97731643 9 - TSS region transcription start site region 136139
Gm33531 15 97739158 to 97745892 6734 + lncRNA gene predicted gene, 33531
Tssr132881 15 97741017 to 97741025 8 + TSS region transcription start site region 132881
Rapgef3 15 97744770 to 97767972 23202 - protein coding gene Rap guanine nucleotide exchange factor (GEF) 3
Cpgi7626 15 97746825 to 97747247 422 CpG island CpG island 7626
Tssr136140 15 97748502 to 97748521 19 - TSS region transcription start site region 136140
Tssr136141 15 97748552 to 97748579 27 - TSS region transcription start site region 136141