Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:9684592-10814606

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spef2 15 9578193 to 9748868 170675 - protein coding gene sperm flagellar 2
D15Mit11 15 9705772 to 9705870 98 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 11
Tssr133716 15 9748812 to 9748874 62 - TSS region transcription start site region 133716
Tssr130655 15 10035814 to 10035820 6 + TSS region transcription start site region 130655
Gm26350 15 10051826 to 10052113 287 + unclassified non-coding RNA gene predicted gene, 26350
Ffaq4 15 10101304 to 10101304 0 QTL free fatty acid QTL 4
Tssr130656 15 10177228 to 10177243 15 + TSS region transcription start site region 130656
Prlr 15 10177238 to 10349180 171942 + protein coding gene prolactin receptor
Tssr130657 15 10177258 to 10177265 7 + TSS region transcription start site region 130657
Tssr130658 15 10177370 to 10177392 22 + TSS region transcription start site region 130658
Tssr130659 15 10177545 to 10177552 7 + TSS region transcription start site region 130659
Tssr130660 15 10177588 to 10177591 3 + TSS region transcription start site region 130660
Tssr130661 15 10177601 to 10177608 7 + TSS region transcription start site region 130661
Tssr130662 15 10177623 to 10177654 31 + TSS region transcription start site region 130662
Cpgi6941 15 10177638 to 10178200 562 CpG island CpG island 6941
Tssr130663 15 10177663 to 10177674 11 + TSS region transcription start site region 130663
Tssr130664 15 10177738 to 10177745 7 + TSS region transcription start site region 130664
Tssr130665 15 10177767 to 10177773 6 + TSS region transcription start site region 130665
Gm41268 15 10199480 to 10203257 3777 - lncRNA gene predicted gene, 41268
Tssr130666 15 10215979 to 10216020 41 + TSS region transcription start site region 130666
Tssr130667 15 10216032 to 10216041 9 + TSS region transcription start site region 130667
Tssr4551 15 10223749 to 10223767 18 + TSS region transcription start site region 4551
Tssr130668 15 10223796 to 10223804 8 + TSS region transcription start site region 130668
Tssr130669 15 10223809 to 10223826 17 + TSS region transcription start site region 130669
Tssr130670 15 10223836 to 10223845 9 + TSS region transcription start site region 130670
Tssr130671 15 10223860 to 10223872 12 + TSS region transcription start site region 130671
Tssr130672 15 10223966 to 10223973 7 + TSS region transcription start site region 130672
Tssr130673 15 10223974 to 10224034 60 + TSS region transcription start site region 130673
Tssr130674 15 10224047 to 10224062 15 + TSS region transcription start site region 130674
Tssr130675 15 10225243 to 10225246 3 + TSS region transcription start site region 130675
Tssr133717 15 10229288 to 10229295 7 - TSS region transcription start site region 133717
Tssr133718 15 10229310 to 10229326 16 - TSS region transcription start site region 133718
Tssr130676 15 10249570 to 10249577 7 + TSS region transcription start site region 130676
Tssr130677 15 10249592 to 10249606 14 + TSS region transcription start site region 130677
Tssr130678 15 10253357 to 10253363 6 + TSS region transcription start site region 130678
Tssr130679 15 10267152 to 10267157 5 + TSS region transcription start site region 130679
Tssr130680 15 10269001 to 10269006 5 + TSS region transcription start site region 130680
Tssr133719 15 10272103 to 10272108 5 - TSS region transcription start site region 133719
Tssr130681 15 10276644 to 10276656 12 + TSS region transcription start site region 130681
Tssr130682 15 10314020 to 10314025 5 + TSS region transcription start site region 130682
Tssr130683 15 10314032 to 10314059 27 + TSS region transcription start site region 130683
Tssr130684 15 10314073 to 10314079 6 + TSS region transcription start site region 130684
Tssr130685 15 10314090 to 10314091 1 + TSS region transcription start site region 130685
Tssr130686 15 10314118 to 10314129 11 + TSS region transcription start site region 130686
Gm21973 15 10325380 to 10373749 48369 + protein coding gene predicted gene 21973
Tssr130687 15 10346484 to 10346491 7 + TSS region transcription start site region 130687
Tssr130688 15 10346733 to 10346756 23 + TSS region transcription start site region 130688
Gm41269 15 10349726 to 10357823 8097 - lncRNA gene predicted gene, 41269
Tssr130689 15 10358525 to 10358545 20 + TSS region transcription start site region 130689
Agxt2 15 10358532 to 10410153 51621 + protein coding gene alanine-glyoxylate aminotransferase 2
Tssr130690 15 10358556 to 10358598 42 + TSS region transcription start site region 130690
Tssr133720 15 10358682 to 10358705 23 - TSS region transcription start site region 133720
Dnajc21 15 10446763 to 10470519 23756 - protein coding gene DnaJ heat shock protein family (Hsp40) member C21
Tssr133721 15 10454807 to 10454841 34 - TSS region transcription start site region 133721
Tssr133722 15 10461990 to 10461998 8 - TSS region transcription start site region 133722
Cpgi6942 15 10469774 to 10470862 1088 CpG island CpG island 6942
Tssr133723 15 10470490 to 10470527 37 - TSS region transcription start site region 133723
Tssr133724 15 10470530 to 10470605 75 - TSS region transcription start site region 133724
Tssr130691 15 10470676 to 10470726 50 + TSS region transcription start site region 130691
Brix1 15 10474779 to 10485937 11158 - protein coding gene BRX1, biogenesis of ribosomes
Tssr133725 15 10482786 to 10482791 5 - TSS region transcription start site region 133725
Tssr133726 15 10485418 to 10485422 4 - TSS region transcription start site region 133726
Cpgi6943 15 10485636 to 10486638 1002 CpG island CpG island 6943
Tssr133727 15 10485890 to 10485951 61 - TSS region transcription start site region 133727
Tssr133728 15 10485956 to 10485967 11 - TSS region transcription start site region 133728
Tssr130692 15 10486008 to 10486077 69 + TSS region transcription start site region 130692
Rad1 15 10486018 to 10499063 13045 + protein coding gene RAD1 checkpoint DNA exonuclease
Tssr130693 15 10486094 to 10486105 11 + TSS region transcription start site region 130693
Tssr133729 15 10496277 to 10496290 13 - TSS region transcription start site region 133729
Ttc23l 15 10500102 to 10558668 58566 - protein coding gene tetratricopeptide repeat domain 23-like
Gm17044 15 10525623 to 10526881 1258 - pseudogene predicted gene 17044
Tssr133730 15 10558636 to 10558641 5 - TSS region transcription start site region 133730
Tssr133731 15 10558644 to 10558697 53 - TSS region transcription start site region 133731
Gm8174 15 10560524 to 10561524 1000 - pseudogene predicted gene 8174
Rai14 15 10568969 to 10714624 145655 - protein coding gene retinoic acid induced 14
Tssr133732 15 10589031 to 10589068 37 - TSS region transcription start site region 133732
Tssr133733 15 10589160 to 10589176 16 - TSS region transcription start site region 133733
Tssr133734 15 10589286 to 10589298 12 - TSS region transcription start site region 133734
Gm10389 15 10600293 to 10611651 11358 + antisense lncRNA gene predicted gene 10389
D15Mit10 15 10688608 to 10688829 221 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 10
Tssr133735 15 10713537 to 10713544 7 - TSS region transcription start site region 133735
Tssr133736 15 10713552 to 10713570 18 - TSS region transcription start site region 133736
Tssr130694 15 10713677 to 10713686 9 + TSS region transcription start site region 130694
Cpgi6944 15 10713761 to 10715070 1309 CpG island CpG island 6944
Tssr133737 15 10714579 to 10714610 31 - TSS region transcription start site region 133737
Tssr133738 15 10714612 to 10714637 25 - TSS region transcription start site region 133738
Tssr133739 15 10714692 to 10714792 100 - TSS region transcription start site region 133739
Tssr133740 15 10714798 to 10714816 18 - TSS region transcription start site region 133740
4930556M19Rik 15 10714836 to 10790123 75287 + lncRNA gene RIKEN cDNA 4930556M19 gene
Tssr130695 15 10714839 to 10714881 42 + TSS region transcription start site region 130695
Tssr133741 15 10715298 to 10715315 17 - TSS region transcription start site region 133741
Tssr130696 15 10717579 to 10717583 4 + TSS region transcription start site region 130696
Tssr133742 15 10720250 to 10720255 5 - TSS region transcription start site region 133742
Tssr133743 15 10720303 to 10720324 21 - TSS region transcription start site region 133743
Tssr133744 15 10720342 to 10720343 1 - TSS region transcription start site region 133744
Tssr133745 15 10723539 to 10723561 22 - TSS region transcription start site region 133745
Tssr130697 15 10723914 to 10723956 42 + TSS region transcription start site region 130697
Tssr133746 15 10771373 to 10771386 13 - TSS region transcription start site region 133746
D15Mit225 15 10799829 to 10799906 77 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 225