Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:9599090-11029091

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118 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spef2 15 9578193 to 9748868 170675 - protein coding gene sperm flagellar 2
Tssr4550 15 9663676 to 9663677 1 + TSS region transcription start site region 4550
D15Mit11 15 9705772 to 9705870 98 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 11
Tssr133716 15 9748812 to 9748874 62 - TSS region transcription start site region 133716
Tssr130655 15 10035814 to 10035820 6 + TSS region transcription start site region 130655
Gm26350 15 10051826 to 10052113 287 + unclassified non-coding RNA gene predicted gene, 26350
Ffaq4 15 10101304 to 10101304 0 QTL free fatty acid QTL 4
Tssr130656 15 10177228 to 10177243 15 + TSS region transcription start site region 130656
Prlr 15 10177238 to 10349180 171942 + protein coding gene prolactin receptor
Tssr130657 15 10177258 to 10177265 7 + TSS region transcription start site region 130657
Tssr130658 15 10177370 to 10177392 22 + TSS region transcription start site region 130658
Tssr130659 15 10177545 to 10177552 7 + TSS region transcription start site region 130659
Tssr130660 15 10177588 to 10177591 3 + TSS region transcription start site region 130660
Tssr130661 15 10177601 to 10177608 7 + TSS region transcription start site region 130661
Tssr130662 15 10177623 to 10177654 31 + TSS region transcription start site region 130662
Cpgi6941 15 10177638 to 10178200 562 CpG island CpG island 6941
Tssr130663 15 10177663 to 10177674 11 + TSS region transcription start site region 130663
Tssr130664 15 10177738 to 10177745 7 + TSS region transcription start site region 130664
Tssr130665 15 10177767 to 10177773 6 + TSS region transcription start site region 130665
Gm41268 15 10199480 to 10203257 3777 - lncRNA gene predicted gene, 41268
Tssr130666 15 10215979 to 10216020 41 + TSS region transcription start site region 130666
Tssr130667 15 10216032 to 10216041 9 + TSS region transcription start site region 130667
Tssr4551 15 10223749 to 10223767 18 + TSS region transcription start site region 4551
Tssr130668 15 10223796 to 10223804 8 + TSS region transcription start site region 130668
Tssr130669 15 10223809 to 10223826 17 + TSS region transcription start site region 130669
Tssr130670 15 10223836 to 10223845 9 + TSS region transcription start site region 130670
Tssr130671 15 10223860 to 10223872 12 + TSS region transcription start site region 130671
Tssr130672 15 10223966 to 10223973 7 + TSS region transcription start site region 130672
Tssr130673 15 10223974 to 10224034 60 + TSS region transcription start site region 130673
Tssr130674 15 10224047 to 10224062 15 + TSS region transcription start site region 130674
Tssr130675 15 10225243 to 10225246 3 + TSS region transcription start site region 130675
Tssr133717 15 10229288 to 10229295 7 - TSS region transcription start site region 133717
Tssr133718 15 10229310 to 10229326 16 - TSS region transcription start site region 133718
Tssr130676 15 10249570 to 10249577 7 + TSS region transcription start site region 130676
Tssr130677 15 10249592 to 10249606 14 + TSS region transcription start site region 130677
Tssr130678 15 10253357 to 10253363 6 + TSS region transcription start site region 130678
Tssr130679 15 10267152 to 10267157 5 + TSS region transcription start site region 130679
Tssr130680 15 10269001 to 10269006 5 + TSS region transcription start site region 130680
Tssr133719 15 10272103 to 10272108 5 - TSS region transcription start site region 133719
Tssr130681 15 10276644 to 10276656 12 + TSS region transcription start site region 130681
Tssr130682 15 10314020 to 10314025 5 + TSS region transcription start site region 130682
Tssr130683 15 10314032 to 10314059 27 + TSS region transcription start site region 130683
Tssr130684 15 10314073 to 10314079 6 + TSS region transcription start site region 130684
Tssr130685 15 10314090 to 10314091 1 + TSS region transcription start site region 130685
Tssr130686 15 10314118 to 10314129 11 + TSS region transcription start site region 130686
Gm21973 15 10325380 to 10373749 48369 + protein coding gene predicted gene 21973
Tssr130687 15 10346484 to 10346491 7 + TSS region transcription start site region 130687
Tssr130688 15 10346733 to 10346756 23 + TSS region transcription start site region 130688
Gm41269 15 10349726 to 10357823 8097 - lncRNA gene predicted gene, 41269
Tssr130689 15 10358525 to 10358545 20 + TSS region transcription start site region 130689
Agxt2 15 10358532 to 10410153 51621 + protein coding gene alanine-glyoxylate aminotransferase 2
Tssr130690 15 10358556 to 10358598 42 + TSS region transcription start site region 130690
Tssr133720 15 10358682 to 10358705 23 - TSS region transcription start site region 133720
Dnajc21 15 10446763 to 10470519 23756 - protein coding gene DnaJ heat shock protein family (Hsp40) member C21
Tssr133721 15 10454807 to 10454841 34 - TSS region transcription start site region 133721
Tssr133722 15 10461990 to 10461998 8 - TSS region transcription start site region 133722
Cpgi6942 15 10469774 to 10470862 1088 CpG island CpG island 6942
Tssr133723 15 10470490 to 10470527 37 - TSS region transcription start site region 133723
Tssr133724 15 10470530 to 10470605 75 - TSS region transcription start site region 133724
Tssr130691 15 10470676 to 10470726 50 + TSS region transcription start site region 130691
Brix1 15 10474779 to 10485937 11158 - protein coding gene BRX1, biogenesis of ribosomes
Tssr133725 15 10482786 to 10482791 5 - TSS region transcription start site region 133725
Tssr133726 15 10485418 to 10485422 4 - TSS region transcription start site region 133726
Cpgi6943 15 10485636 to 10486638 1002 CpG island CpG island 6943
Tssr133727 15 10485890 to 10485951 61 - TSS region transcription start site region 133727
Tssr133728 15 10485956 to 10485967 11 - TSS region transcription start site region 133728
Tssr130692 15 10486008 to 10486077 69 + TSS region transcription start site region 130692
Rad1 15 10486018 to 10499063 13045 + protein coding gene RAD1 checkpoint DNA exonuclease
Tssr130693 15 10486094 to 10486105 11 + TSS region transcription start site region 130693
Tssr133729 15 10496277 to 10496290 13 - TSS region transcription start site region 133729
Ttc23l 15 10500102 to 10558668 58566 - protein coding gene tetratricopeptide repeat domain 23-like
Gm17044 15 10525623 to 10526881 1258 - pseudogene predicted gene 17044
Tssr133730 15 10558636 to 10558641 5 - TSS region transcription start site region 133730
Tssr133731 15 10558644 to 10558697 53 - TSS region transcription start site region 133731
Gm8174 15 10560524 to 10561524 1000 - pseudogene predicted gene 8174
Rai14 15 10568969 to 10714624 145655 - protein coding gene retinoic acid induced 14
Tssr133732 15 10589031 to 10589068 37 - TSS region transcription start site region 133732
Tssr133733 15 10589160 to 10589176 16 - TSS region transcription start site region 133733
Tssr133734 15 10589286 to 10589298 12 - TSS region transcription start site region 133734
Gm10389 15 10600293 to 10611651 11358 + antisense lncRNA gene predicted gene 10389
D15Mit10 15 10688608 to 10688829 221 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 10
Tssr133735 15 10713537 to 10713544 7 - TSS region transcription start site region 133735
Tssr133736 15 10713552 to 10713570 18 - TSS region transcription start site region 133736
Tssr130694 15 10713677 to 10713686 9 + TSS region transcription start site region 130694
Cpgi6944 15 10713761 to 10715070 1309 CpG island CpG island 6944
Tssr133737 15 10714579 to 10714610 31 - TSS region transcription start site region 133737
Tssr133738 15 10714612 to 10714637 25 - TSS region transcription start site region 133738
Tssr133739 15 10714692 to 10714792 100 - TSS region transcription start site region 133739
Tssr133740 15 10714798 to 10714816 18 - TSS region transcription start site region 133740
4930556M19Rik 15 10714836 to 10790123 75287 + lncRNA gene RIKEN cDNA 4930556M19 gene
Tssr130695 15 10714839 to 10714881 42 + TSS region transcription start site region 130695
Tssr133741 15 10715298 to 10715315 17 - TSS region transcription start site region 133741
Tssr130696 15 10717579 to 10717583 4 + TSS region transcription start site region 130696
Tssr133742 15 10720250 to 10720255 5 - TSS region transcription start site region 133742
Tssr133743 15 10720303 to 10720324 21 - TSS region transcription start site region 133743
Tssr133744 15 10720342 to 10720343 1 - TSS region transcription start site region 133744
Tssr133745 15 10723539 to 10723561 22 - TSS region transcription start site region 133745
Tssr130697 15 10723914 to 10723956 42 + TSS region transcription start site region 130697
Tssr133746 15 10771373 to 10771386 13 - TSS region transcription start site region 133746
D15Mit225 15 10799829 to 10799906 77 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 225
Gm19276 15 10829051 to 10832713 3662 + lincRNA gene predicted gene, 19276
Gm29742 15 10917437 to 10917821 384 + pseudogene predicted gene, 29742
Gm49068 15 10938122 to 10938544 422 + pseudogene predicted gene, 49068
Gm34315 15 10949648 to 10981650 32002 - lncRNA gene predicted gene, 34315
Tssr130698 15 10952203 to 10952214 11 + TSS region transcription start site region 130698
C1qtnf3 15 10952332 to 10980150 27818 + protein coding gene C1q and tumor necrosis factor related protein 3
Tssr130699 15 10952348 to 10952364 16 + TSS region transcription start site region 130699
Cpgi6945 15 10952383 to 10952605 222 CpG island CpG island 6945
Cpgi6946 15 10981341 to 10982146 805 CpG island CpG island 6946
Tssr130700 15 10981747 to 10981765 18 + TSS region transcription start site region 130700
Amacr 15 10981756 to 10996624 14868 + protein coding gene alpha-methylacyl-CoA racemase
Tssr130701 15 10981780 to 10981805 25 + TSS region transcription start site region 130701
Tssr130702 15 10992369 to 10992370 1 + TSS region transcription start site region 130702
Tssr4552 15 10996428 to 10996431 3 + TSS region transcription start site region 4552
Tssr130703 15 11000716 to 11000736 20 + TSS region transcription start site region 130703
Slc45a2 15 11000721 to 11029233 28512 + protein coding gene solute carrier family 45, member 2
Tssr130704 15 11000748 to 11000763 15 + TSS region transcription start site region 130704
Cpgi6947 15 11027764 to 11028018 254 CpG island CpG island 6947