Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:95477739-96489129

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122 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nell2 15 95219440 to 95528759 309319 - protein coding gene NEL-like 2
Cpgi7594 15 95527045 to 95528895 1850 CpG island CpG island 7594
Tssr135996 15 95527959 to 95527973 14 - TSS region transcription start site region 135996
Tssr135997 15 95527978 to 95528014 36 - TSS region transcription start site region 135997
Tssr135998 15 95528078 to 95528123 45 - TSS region transcription start site region 135998
Tssr135999 15 95528124 to 95528192 68 - TSS region transcription start site region 135999
Tssr136000 15 95528228 to 95528266 38 - TSS region transcription start site region 136000
Tssr136001 15 95528429 to 95528445 16 - TSS region transcription start site region 136001
Tssr136002 15 95528542 to 95528565 23 - TSS region transcription start site region 136002
Tssr136003 15 95528577 to 95528640 63 - TSS region transcription start site region 136003
Tssr136004 15 95528702 to 95528777 75 - TSS region transcription start site region 136004
Tssr136005 15 95587051 to 95587084 33 - TSS region transcription start site region 136005
Gm31551 15 95595509 to 95599374 3865 - lncRNA gene predicted gene, 31551
Gm24668 15 95606562 to 95606665 103 - snRNA gene predicted gene, 24668
Dbx2 15 95623563 to 95654771 31208 - protein coding gene developing brain homeobox 2
D15Jpk2 15 95625414 to 95625618 204 DNA segment DNA segment, Chr 15, Japan, Kominami 2
Cpgi7595 15 95654022 to 95654899 877 CpG island CpG island 7595
Tssr4702 15 95654348 to 95654371 23 - TSS region transcription start site region 4702
Tssr132791 15 95654470 to 95654481 11 + TSS region transcription start site region 132791
Gm31690 15 95654568 to 95669237 14669 + lncRNA gene predicted gene, 31690
Tssr136006 15 95654680 to 95654689 9 - TSS region transcription start site region 136006
Tssr136007 15 95654692 to 95654713 21 - TSS region transcription start site region 136007
Tssr136008 15 95654779 to 95654794 15 - TSS region transcription start site region 136008
Tssr136009 15 95654809 to 95654826 17 - TSS region transcription start site region 136009
Tssr4703 15 95705096 to 95705098 2 + TSS region transcription start site region 4703
Gm8843 15 95715193 to 95716294 1101 + pseudogene predicted gene 8843
Gm49169 15 95736415 to 95753732 17317 - lincRNA gene predicted gene, 49169
Gm6961 15 95747247 to 95751591 4344 - lincRNA gene predicted gene 6961
Tssr136010 15 95759244 to 95759248 4 - TSS region transcription start site region 136010
Tssr136011 15 95772623 to 95772638 15 - TSS region transcription start site region 136011
Tssr136012 15 95772644 to 95772655 11 - TSS region transcription start site region 136012
Gm8849 15 95775754 to 95776233 479 + pseudogene predicted gene 8849
A130051J06Rik 15 95787856 to 95791642 3786 - antisense lncRNA gene RIKEN cDNA A130051J0 gene
Cpgi7596 15 95790225 to 95791513 1288 CpG island CpG island 7596
Tssr132792 15 95790831 to 95790859 28 + TSS region transcription start site region 132792
Ano6 15 95790843 to 95974751 183908 + protein coding gene anoctamin 6
Tssr132793 15 95790860 to 95790874 14 + TSS region transcription start site region 132793
Tssr132794 15 95790884 to 95790900 16 + TSS region transcription start site region 132794
Tssr132795 15 95790903 to 95790914 11 + TSS region transcription start site region 132795
Tssr132796 15 95790922 to 95790933 11 + TSS region transcription start site region 132796
Tssr132797 15 95790951 to 95790965 14 + TSS region transcription start site region 132797
Tssr132798 15 95790971 to 95791008 37 + TSS region transcription start site region 132798
Tssr132799 15 95800658 to 95800666 8 + TSS region transcription start site region 132799
Tssr132800 15 95800695 to 95800707 12 + TSS region transcription start site region 132800
Tssr132801 15 95801457 to 95801484 27 + TSS region transcription start site region 132801
Gm49173 15 95802033 to 95804401 2368 - antisense lncRNA gene predicted gene, 49173
Tssr4704 15 95803014 to 95803017 3 + TSS region transcription start site region 4704
Gm17546 15 95824458 to 95830072 5614 - antisense lncRNA gene predicted gene, 17546
Tssr132802 15 95830091 to 95830124 33 + TSS region transcription start site region 132802
Tssr132803 15 95830125 to 95830142 17 + TSS region transcription start site region 132803
Tssr132804 15 95830417 to 95830430 13 + TSS region transcription start site region 132804
Tssr132805 15 95836942 to 95836946 4 + TSS region transcription start site region 132805
Tssr132806 15 95852178 to 95852181 3 + TSS region transcription start site region 132806
Tssr132807 15 95864092 to 95864117 25 + TSS region transcription start site region 132807
Gm25070 15 95879716 to 95879817 101 - miRNA gene predicted gene, 25070
Tssr136013 15 95887504 to 95887537 33 - TSS region transcription start site region 136013
Gm41389 15 95897656 to 95907629 9973 - lncRNA gene predicted gene, 41389
Tssr132808 15 95943558 to 95943561 3 + TSS region transcription start site region 132808
Cpgi7597 15 95948160 to 95948766 606 CpG island CpG island 7597
3110045A19Rik 15 95951036 to 95952369 1333 unclassified gene RIKEN cDNA 3110045A19 gene
Tssr132809 15 95959153 to 95959161 8 + TSS region transcription start site region 132809
Tssr132810 15 95959183 to 95959193 10 + TSS region transcription start site region 132810
Tssr132811 15 95965893 to 95965906 13 + TSS region transcription start site region 132811
Gm49172 15 95972739 to 95994129 21390 - unclassified non-coding RNA gene predicted gene, 49172
V125Dq11 15 96000000 to 96000000 0 QTL vitamin D active form serum level QTL 11
D15Mit75 15 96043497 to 96043618 121 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 75
D030018L15Rik 15 96051616 to 96079553 27937 - lincRNA gene RIKEN cDNA D030018L15 gene
Tssr132812 15 96063212 to 96063218 6 + TSS region transcription start site region 132812
Gm41390 15 96072956 to 96076105 3149 + pseudogene predicted gene, 41390
Tssr136014 15 96131822 to 96131831 9 - TSS region transcription start site region 136014
Gm38469 15 96134823 to 96287396 152573 - protein coding gene predicted gene, 38469
Gm4371 15 96182800 to 96203470 20670 + pseudogene predicted gene 4371
Tssr132813 15 96185734 to 96185772 38 + TSS region transcription start site region 132813
2610037D02Rik 15 96190474 to 96197974 7500 - lincRNA gene RIKEN cDNA 2610037D02 gene
Tssr136015 15 96198009 to 96198028 19 - TSS region transcription start site region 136015
Tssr136016 15 96204681 to 96204692 11 - TSS region transcription start site region 136016
Tssr136017 15 96204705 to 96204714 9 - TSS region transcription start site region 136017
Tssr136018 15 96210864 to 96210876 12 - TSS region transcription start site region 136018
4833422M21Rik 15 96231870 to 96254684 22814 - lncRNA gene RIKEN cDNA 4833422M21 gene
Cpgi7598 15 96236249 to 96236415 166 CpG island CpG island 7598
Gm8866 15 96247322 to 96247919 597 - pseudogene predicted gene 8866
Tssr136019 15 96264050 to 96264053 3 - TSS region transcription start site region 136019
D15Mit39 15 96265530 to 96265658 128 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 39
Dipa5 15 96265530 to 96265658 128 QTL drug induced psychomotor activation 5
E330033B04Rik 15 96268564 to 96275275 6711 - lncRNA gene RIKEN cDNA E330033B04 gene
Tssr136020 15 96273334 to 96273337 3 - TSS region transcription start site region 136020
Cpgi7599 15 96284748 to 96285883 1135 CpG island CpG island 7599
Tssr136021 15 96285491 to 96285539 48 - TSS region transcription start site region 136021
Tssr136022 15 96285709 to 96285732 23 - TSS region transcription start site region 136022
Tssr136023 15 96285885 to 96285900 15 - TSS region transcription start site region 136023
Tssr132814 15 96286005 to 96286024 19 + TSS region transcription start site region 132814
Cpgi7600 15 96286289 to 96288692 2403 CpG island CpG island 7600
Tssr132815 15 96286756 to 96286767 11 + TSS region transcription start site region 132815
Tssr132816 15 96286789 to 96286844 55 + TSS region transcription start site region 132816
Tssr132817 15 96286860 to 96286919 59 + TSS region transcription start site region 132817
Tssr132818 15 96286930 to 96286939 9 + TSS region transcription start site region 132818
Tssr132819 15 96287248 to 96287265 17 + TSS region transcription start site region 132819
Tssr132820 15 96287270 to 96287280 10 + TSS region transcription start site region 132820
Arid2 15 96287518 to 96404992 117474 + protein coding gene AT rich interactive domain 2 (ARID, RFX-like)
Tssr132821 15 96287537 to 96287604 67 + TSS region transcription start site region 132821
Tssr132822 15 96287766 to 96287769 3 + TSS region transcription start site region 132822
Tssr132823 15 96288882 to 96288893 11 + TSS region transcription start site region 132823
Tssr132824 15 96288905 to 96288916 11 + TSS region transcription start site region 132824
Tssr132825 15 96342570 to 96342574 4 + TSS region transcription start site region 132825
Tssr132826 15 96370252 to 96370263 11 + TSS region transcription start site region 132826
Tssr132827 15 96402993 to 96403023 30 + TSS region transcription start site region 132827
Gm25397 15 96404858 to 96404949 91 + miRNA gene predicted gene, 25397
Scaf11 15 96411699 to 96460843 49144 - protein coding gene SR-related CTD-associated factor 11
Tssr4705 15 96457232 to 96457246 14 + TSS region transcription start site region 4705
Cpgi7601 15 96459827 to 96461817 1990 CpG island CpG island 7601
Tssr132828 15 96460208 to 96460225 17 + TSS region transcription start site region 132828
Tssr136024 15 96460711 to 96460742 31 - TSS region transcription start site region 136024
Tssr136025 15 96460743 to 96460834 91 - TSS region transcription start site region 136025
Tssr136026 15 96460838 to 96460856 18 - TSS region transcription start site region 136026
Tssr136027 15 96460871 to 96460926 55 - TSS region transcription start site region 136027
Tssr136028 15 96460935 to 96460993 58 - TSS region transcription start site region 136028
Tssr132829 15 96461437 to 96461454 17 + TSS region transcription start site region 132829
Tssr136029 15 96474447 to 96474468 21 - TSS region transcription start site region 136029
Tssr136030 15 96474722 to 96474734 12 - TSS region transcription start site region 136030
Tssr136031 15 96474736 to 96474755 19 - TSS region transcription start site region 136031
Tssr132830 15 96474884 to 96474891 7 + TSS region transcription start site region 132830
Cpgi7602 15 96478530 to 96478729 199 CpG island CpG island 7602