Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:9471569-14801588

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373 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Il7r 15 9506159 to 9529935 23776 - protein coding gene interleukin 7 receptor
Tssr133693 15 9506750 to 9506762 12 - TSS region transcription start site region 133693
Tssr133694 15 9507113 to 9507125 12 - TSS region transcription start site region 133694
Tssr133695 15 9507436 to 9507448 12 - TSS region transcription start site region 133695
Tssr133696 15 9507776 to 9507804 28 - TSS region transcription start site region 133696
Tssr133697 15 9508757 to 9508786 29 - TSS region transcription start site region 133697
D15Mit264 15 9509776 to 9509925 149 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 264
Tssr133698 15 9516462 to 9516493 31 - TSS region transcription start site region 133698
Tssr133699 15 9524092 to 9524104 12 - TSS region transcription start site region 133699
Tssr133700 15 9524129 to 9524135 6 - TSS region transcription start site region 133700
Tssr130641 15 9524314 to 9524318 4 + TSS region transcription start site region 130641
Tssr130642 15 9524329 to 9524340 11 + TSS region transcription start site region 130642
Tssr130643 15 9524347 to 9524358 11 + TSS region transcription start site region 130643
Tssr130644 15 9525110 to 9525154 44 + TSS region transcription start site region 130644
Tssr130645 15 9527068 to 9527076 8 + TSS region transcription start site region 130645
Tssr133701 15 9528043 to 9528052 9 - TSS region transcription start site region 133701
Tssr133702 15 9528078 to 9528088 10 - TSS region transcription start site region 133702
Tssr130646 15 9528472 to 9528483 11 + TSS region transcription start site region 130646
Tssr130647 15 9528490 to 9528503 13 + TSS region transcription start site region 130647
Tssr130648 15 9528527 to 9528540 13 + TSS region transcription start site region 130648
Tssr133703 15 9529697 to 9529708 11 - TSS region transcription start site region 133703
Tssr133704 15 9529738 to 9529772 34 - TSS region transcription start site region 133704
Tssr133705 15 9529813 to 9529846 33 - TSS region transcription start site region 133705
Tssr133706 15 9529850 to 9529865 15 - TSS region transcription start site region 133706
Tssr133707 15 9529868 to 9529881 13 - TSS region transcription start site region 133707
Tssr133708 15 9530032 to 9530036 4 - TSS region transcription start site region 133708
Tssr133709 15 9530134 to 9530185 51 - TSS region transcription start site region 133709
Tssr133710 15 9530311 to 9530322 11 - TSS region transcription start site region 133710
Tssr130649 15 9533573 to 9533582 9 + TSS region transcription start site region 130649
Tssr130650 15 9533598 to 9533627 29 + TSS region transcription start site region 130650
Tssr133711 15 9535350 to 9535362 12 - TSS region transcription start site region 133711
Tssr130651 15 9547825 to 9547831 6 + TSS region transcription start site region 130651
Tssr130652 15 9554562 to 9554581 19 + TSS region transcription start site region 130652
Tssr130653 15 9554586 to 9554597 11 + TSS region transcription start site region 130653
Tssr133712 15 9555948 to 9555964 16 - TSS region transcription start site region 133712
Tssr130654 15 9556203 to 9556218 15 + TSS region transcription start site region 130654
Tssr4549 15 9567302 to 9567307 5 + TSS region transcription start site region 4549
Tssr133713 15 9572551 to 9572566 15 - TSS region transcription start site region 133713
Spef2 15 9578193 to 9748868 170675 - protein coding gene sperm flagellar 2
Tssr133714 15 9580622 to 9580633 11 - TSS region transcription start site region 133714
Tssr133715 15 9580646 to 9580655 9 - TSS region transcription start site region 133715
Tssr4550 15 9663676 to 9663677 1 + TSS region transcription start site region 4550
D15Mit11 15 9705772 to 9705870 98 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 11
Tssr133716 15 9748812 to 9748874 62 - TSS region transcription start site region 133716
Tssr130655 15 10035814 to 10035820 6 + TSS region transcription start site region 130655
Gm26350 15 10051826 to 10052113 287 + unclassified non-coding RNA gene predicted gene, 26350
Ffaq4 15 10101304 to 10101304 0 QTL free fatty acid QTL 4
Tssr130656 15 10177228 to 10177243 15 + TSS region transcription start site region 130656
Prlr 15 10177238 to 10349180 171942 + protein coding gene prolactin receptor
Tssr130657 15 10177258 to 10177265 7 + TSS region transcription start site region 130657
Tssr130658 15 10177370 to 10177392 22 + TSS region transcription start site region 130658
Tssr130659 15 10177545 to 10177552 7 + TSS region transcription start site region 130659
Tssr130660 15 10177588 to 10177591 3 + TSS region transcription start site region 130660
Tssr130661 15 10177601 to 10177608 7 + TSS region transcription start site region 130661
Tssr130662 15 10177623 to 10177654 31 + TSS region transcription start site region 130662
Cpgi6941 15 10177638 to 10178200 562 CpG island CpG island 6941
Tssr130663 15 10177663 to 10177674 11 + TSS region transcription start site region 130663
Tssr130664 15 10177738 to 10177745 7 + TSS region transcription start site region 130664
Tssr130665 15 10177767 to 10177773 6 + TSS region transcription start site region 130665
Gm41268 15 10199480 to 10203257 3777 - lncRNA gene predicted gene, 41268
Tssr130666 15 10215979 to 10216020 41 + TSS region transcription start site region 130666
Tssr130667 15 10216032 to 10216041 9 + TSS region transcription start site region 130667
Tssr4551 15 10223749 to 10223767 18 + TSS region transcription start site region 4551
Tssr130668 15 10223796 to 10223804 8 + TSS region transcription start site region 130668
Tssr130669 15 10223809 to 10223826 17 + TSS region transcription start site region 130669
Tssr130670 15 10223836 to 10223845 9 + TSS region transcription start site region 130670
Tssr130671 15 10223860 to 10223872 12 + TSS region transcription start site region 130671
Tssr130672 15 10223966 to 10223973 7 + TSS region transcription start site region 130672
Tssr130673 15 10223974 to 10224034 60 + TSS region transcription start site region 130673
Tssr130674 15 10224047 to 10224062 15 + TSS region transcription start site region 130674
Tssr130675 15 10225243 to 10225246 3 + TSS region transcription start site region 130675
Tssr133717 15 10229288 to 10229295 7 - TSS region transcription start site region 133717
Tssr133718 15 10229310 to 10229326 16 - TSS region transcription start site region 133718
Tssr130676 15 10249570 to 10249577 7 + TSS region transcription start site region 130676
Tssr130677 15 10249592 to 10249606 14 + TSS region transcription start site region 130677
Tssr130678 15 10253357 to 10253363 6 + TSS region transcription start site region 130678
Tssr130679 15 10267152 to 10267157 5 + TSS region transcription start site region 130679
Tssr130680 15 10269001 to 10269006 5 + TSS region transcription start site region 130680
Tssr133719 15 10272103 to 10272108 5 - TSS region transcription start site region 133719
Tssr130681 15 10276644 to 10276656 12 + TSS region transcription start site region 130681
Tssr130682 15 10314020 to 10314025 5 + TSS region transcription start site region 130682
Tssr130683 15 10314032 to 10314059 27 + TSS region transcription start site region 130683
Tssr130684 15 10314073 to 10314079 6 + TSS region transcription start site region 130684
Tssr130685 15 10314090 to 10314091 1 + TSS region transcription start site region 130685
Tssr130686 15 10314118 to 10314129 11 + TSS region transcription start site region 130686
Gm21973 15 10325380 to 10373749 48369 + protein coding gene predicted gene 21973
Tssr130687 15 10346484 to 10346491 7 + TSS region transcription start site region 130687
Tssr130688 15 10346733 to 10346756 23 + TSS region transcription start site region 130688
Gm41269 15 10349726 to 10357823 8097 - lncRNA gene predicted gene, 41269
Tssr130689 15 10358525 to 10358545 20 + TSS region transcription start site region 130689
Agxt2 15 10358532 to 10410153 51621 + protein coding gene alanine-glyoxylate aminotransferase 2
Tssr130690 15 10358556 to 10358598 42 + TSS region transcription start site region 130690
Tssr133720 15 10358682 to 10358705 23 - TSS region transcription start site region 133720
Dnajc21 15 10446763 to 10470519 23756 - protein coding gene DnaJ heat shock protein family (Hsp40) member C21
Tssr133721 15 10454807 to 10454841 34 - TSS region transcription start site region 133721
Tssr133722 15 10461990 to 10461998 8 - TSS region transcription start site region 133722
Cpgi6942 15 10469774 to 10470862 1088 CpG island CpG island 6942
Tssr133723 15 10470490 to 10470527 37 - TSS region transcription start site region 133723
Tssr133724 15 10470530 to 10470605 75 - TSS region transcription start site region 133724
Tssr130691 15 10470676 to 10470726 50 + TSS region transcription start site region 130691
Brix1 15 10474779 to 10485937 11158 - protein coding gene BRX1, biogenesis of ribosomes
Tssr133725 15 10482786 to 10482791 5 - TSS region transcription start site region 133725
Tssr133726 15 10485418 to 10485422 4 - TSS region transcription start site region 133726
Cpgi6943 15 10485636 to 10486638 1002 CpG island CpG island 6943
Tssr133727 15 10485890 to 10485951 61 - TSS region transcription start site region 133727
Tssr133728 15 10485956 to 10485967 11 - TSS region transcription start site region 133728
Tssr130692 15 10486008 to 10486077 69 + TSS region transcription start site region 130692
Rad1 15 10486018 to 10499063 13045 + protein coding gene RAD1 checkpoint DNA exonuclease
Tssr130693 15 10486094 to 10486105 11 + TSS region transcription start site region 130693
Tssr133729 15 10496277 to 10496290 13 - TSS region transcription start site region 133729
Ttc23l 15 10500102 to 10558668 58566 - protein coding gene tetratricopeptide repeat domain 23-like
Gm17044 15 10525623 to 10526881 1258 - pseudogene predicted gene 17044
Tssr133730 15 10558636 to 10558641 5 - TSS region transcription start site region 133730
Tssr133731 15 10558644 to 10558697 53 - TSS region transcription start site region 133731
Gm8174 15 10560524 to 10561524 1000 - pseudogene predicted gene 8174
Rai14 15 10568969 to 10714624 145655 - protein coding gene retinoic acid induced 14
Tssr133732 15 10589031 to 10589068 37 - TSS region transcription start site region 133732
Tssr133733 15 10589160 to 10589176 16 - TSS region transcription start site region 133733
Tssr133734 15 10589286 to 10589298 12 - TSS region transcription start site region 133734
Gm10389 15 10600293 to 10611651 11358 + antisense lncRNA gene predicted gene 10389
D15Mit10 15 10688608 to 10688829 221 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 10
Tssr133735 15 10713537 to 10713544 7 - TSS region transcription start site region 133735
Tssr133736 15 10713552 to 10713570 18 - TSS region transcription start site region 133736
Tssr130694 15 10713677 to 10713686 9 + TSS region transcription start site region 130694
Cpgi6944 15 10713761 to 10715070 1309 CpG island CpG island 6944
Tssr133737 15 10714579 to 10714610 31 - TSS region transcription start site region 133737
Tssr133738 15 10714612 to 10714637 25 - TSS region transcription start site region 133738
Tssr133739 15 10714692 to 10714792 100 - TSS region transcription start site region 133739
Tssr133740 15 10714798 to 10714816 18 - TSS region transcription start site region 133740
4930556M19Rik 15 10714836 to 10790123 75287 + lncRNA gene RIKEN cDNA 4930556M19 gene
Tssr130695 15 10714839 to 10714881 42 + TSS region transcription start site region 130695
Tssr133741 15 10715298 to 10715315 17 - TSS region transcription start site region 133741
Tssr130696 15 10717579 to 10717583 4 + TSS region transcription start site region 130696
Tssr133742 15 10720250 to 10720255 5 - TSS region transcription start site region 133742
Tssr133743 15 10720303 to 10720324 21 - TSS region transcription start site region 133743
Tssr133744 15 10720342 to 10720343 1 - TSS region transcription start site region 133744
Tssr133745 15 10723539 to 10723561 22 - TSS region transcription start site region 133745
Tssr130697 15 10723914 to 10723956 42 + TSS region transcription start site region 130697
Tssr133746 15 10771373 to 10771386 13 - TSS region transcription start site region 133746
D15Mit225 15 10799829 to 10799906 77 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 225
Gm19276 15 10829051 to 10832713 3662 + lincRNA gene predicted gene, 19276
Gm29742 15 10917437 to 10917821 384 + pseudogene predicted gene, 29742
Gm49068 15 10938122 to 10938544 422 + pseudogene predicted gene, 49068
Gm34315 15 10949648 to 10981650 32002 - lncRNA gene predicted gene, 34315
Tssr130698 15 10952203 to 10952214 11 + TSS region transcription start site region 130698
C1qtnf3 15 10952332 to 10980150 27818 + protein coding gene C1q and tumor necrosis factor related protein 3
Tssr130699 15 10952348 to 10952364 16 + TSS region transcription start site region 130699
Cpgi6945 15 10952383 to 10952605 222 CpG island CpG island 6945
Cpgi6946 15 10981341 to 10982146 805 CpG island CpG island 6946
Tssr130700 15 10981747 to 10981765 18 + TSS region transcription start site region 130700
Amacr 15 10981756 to 10996624 14868 + protein coding gene alpha-methylacyl-CoA racemase
Tssr130701 15 10981780 to 10981805 25 + TSS region transcription start site region 130701
Tssr130702 15 10992369 to 10992370 1 + TSS region transcription start site region 130702
Tssr4552 15 10996428 to 10996431 3 + TSS region transcription start site region 4552
Tssr130703 15 11000716 to 11000736 20 + TSS region transcription start site region 130703
Slc45a2 15 11000721 to 11029233 28512 + protein coding gene solute carrier family 45, member 2
Tssr130704 15 11000748 to 11000763 15 + TSS region transcription start site region 130704
Cpgi6947 15 11027764 to 11028018 254 CpG island CpG island 6947
Rxfp3 15 11033717 to 11037968 4251 - protein coding gene relaxin family peptide receptor 3
Cpgi6948 15 11035853 to 11038036 2183 CpG island CpG island 6948
Tssr130705 15 11064764 to 11064797 33 + TSS region transcription start site region 130705
Adamts12 15 11064790 to 11346867 282077 + protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 12
Tssr130706 15 11064801 to 11064823 22 + TSS region transcription start site region 130706
Tssr130707 15 11064863 to 11064877 14 + TSS region transcription start site region 130707
Tssr130708 15 11076330 to 11076333 3 + TSS region transcription start site region 130708
Tssr4553 15 11334759 to 11334765 6 + TSS region transcription start site region 4553
Gm34444 15 11359975 to 11367060 7085 - lncRNA gene predicted gene, 34444
Gm24844 15 11361611 to 11361737 126 - snoRNA gene predicted gene, 24844
Tars 15 11383663 to 11399658 15995 - protein coding gene threonyl-tRNA synthetase
Cpgi6949 15 11399388 to 11399964 576 CpG island CpG island 6949
Tssr133747 15 11399552 to 11399559 7 - TSS region transcription start site region 133747
Tssr133748 15 11399580 to 11399593 13 - TSS region transcription start site region 133748
Tssr133749 15 11399594 to 11399674 80 - TSS region transcription start site region 133749
Tssr133750 15 11399676 to 11399683 7 - TSS region transcription start site region 133750
Gm49106 15 11625097 to 11630746 5649 - lincRNA gene predicted gene, 49106
Gm49107 15 11630729 to 11638325 7596 + lincRNA gene predicted gene, 49107
Gm41271 15 11696810 to 11703703 6893 - lncRNA gene predicted gene, 41271
Gm41272 15 11709377 to 11715373 5996 - lncRNA gene predicted gene, 41272
Tssr133751 15 11720558 to 11720564 6 - TSS region transcription start site region 133751
Gm34501 15 11725754 to 11729618 3864 - lncRNA gene predicted gene, 34501
Tssr4554 15 11762916 to 11762918 2 + TSS region transcription start site region 4554
Npr3 15 11839896 to 11907287 67391 - protein coding gene natriuretic peptide receptor 3
Cpgi6950 15 11903705 to 11905765 2060 CpG island CpG island 6950
Tssr133752 15 11905609 to 11905623 14 - TSS region transcription start site region 133752
Cpgi6951 15 11906060 to 11907037 977 CpG island CpG island 6951
Tssr133753 15 11906098 to 11906115 17 - TSS region transcription start site region 133753
Tssr133754 15 11906156 to 11906182 26 - TSS region transcription start site region 133754
Tssr133755 15 11906184 to 11906202 18 - TSS region transcription start site region 133755
Gm5144 15 11906525 to 11907390 865 + bidirectional promoter lncRNA gene predicted gene 5144
Tssr133756 15 11907184 to 11907227 43 - TSS region transcription start site region 133756
Gm34618 15 11955357 to 11964083 8726 - lncRNA gene predicted gene, 34618
Gm21997 15 11963984 to 11964864 880 + pseudogene predicted gene 21997
Gm24074 15 11965330 to 11965589 259 + unclassified non-coding RNA gene predicted gene, 24074
Tssr130709 15 11967058 to 11967114 56 + TSS region transcription start site region 130709
1700047G03Rik 15 11967062 to 11970083 3021 + lincRNA gene RIKEN cDNA 1700047G03 gene
Tssr130710 15 11971308 to 11971311 3 + TSS region transcription start site region 130710
Sub1 15 11981336 to 11996035 14699 - protein coding gene SUB1 homolog, transcriptional regulator
Tssr133757 15 11987691 to 11987695 4 - TSS region transcription start site region 133757
Tssr133758 15 11991016 to 11991050 34 - TSS region transcription start site region 133758
Cpgi6952 15 11995260 to 11996358 1098 CpG island CpG island 6952