Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:93958084-95218087

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm30564 15 93956722 to 93964708 7986 - lincRNA gene predicted gene, 30564
Gm30609 15 93963066 to 93965619 2553 + lncRNA gene predicted gene, 30609
Tssr132778 15 93996198 to 93996202 4 + TSS region transcription start site region 132778
Gm30665 15 94081266 to 94108083 26817 - lncRNA gene predicted gene, 30665
Gm41388 15 94132239 to 94138271 6032 - lncRNA gene predicted gene, 41388
Tssr4699 15 94137758 to 94137793 35 - TSS region transcription start site region 4699
Tssr132779 15 94205319 to 94205326 7 + TSS region transcription start site region 132779
D630010B17Rik 15 94247202 to 94255606 8404 + lncRNA gene RIKEN cDNA D630010B17 gene
Adamts20 15 94268314 to 94432074 163760 - protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20
D15Mit245 15 94278551 to 94278669 118 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 245
Cpgi7586 15 94349106 to 94349296 190 CpG island CpG island 7586
Cpgi7587 15 94403174 to 94404925 1751 CpG island CpG island 7587
Tssr135985 15 94404288 to 94404327 39 - TSS region transcription start site region 135985
Tssr135986 15 94404339 to 94404371 32 - TSS region transcription start site region 135986
D15Mit272 15 94409002 to 94409125 123 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 272
Pus7l 15 94522688 to 94543547 20859 - protein coding gene pseudouridylate synthase 7-like
Cpgi7588 15 94522891 to 94523621 730 CpG island CpG island 7588
Cpgi7589 15 94543205 to 94544110 905 CpG island CpG island 7589
Tssr135987 15 94543472 to 94543514 42 - TSS region transcription start site region 135987
Tssr132780 15 94543605 to 94543658 53 + TSS region transcription start site region 132780
Irak4 15 94543613 to 94568317 24704 + protein coding gene interleukin-1 receptor-associated kinase 4
Tssr132781 15 94543666 to 94543681 15 + TSS region transcription start site region 132781
Tssr132782 15 94544260 to 94544268 8 + TSS region transcription start site region 132782
Cpgi7590 15 94561490 to 94561725 235 CpG island CpG island 7590
Tssr132783 15 94561583 to 94561597 14 + TSS region transcription start site region 132783
Tssr135988 15 94566026 to 94566035 9 - TSS region transcription start site region 135988
Tssr132784 15 94567074 to 94567080 6 + TSS region transcription start site region 132784
Twf1 15 94577948 to 94589884 11936 - protein coding gene twinfilin actin binding protein 1
Tssr135989 15 94579208 to 94579230 22 - TSS region transcription start site region 135989
Tssr135990 15 94586510 to 94586531 21 - TSS region transcription start site region 135990
Tssr135991 15 94588055 to 94588060 5 - TSS region transcription start site region 135991
Tssr135992 15 94588084 to 94588087 3 - TSS region transcription start site region 135992
Cpgi7591 15 94589267 to 94590019 752 CpG island CpG island 7591
Tssr135993 15 94589807 to 94589828 21 - TSS region transcription start site region 135993
Tssr135994 15 94589832 to 94589864 32 - TSS region transcription start site region 135994
Tssr135995 15 94589870 to 94589881 11 - TSS region transcription start site region 135995
Gm30754 15 94595525 to 94599490 3965 - lncRNA gene predicted gene, 30754
Cpgi7592 15 94628802 to 94629751 949 CpG island CpG island 7592
Tssr132785 15 94628906 to 94628922 16 + TSS region transcription start site region 132785
Tssr132786 15 94629082 to 94629129 47 + TSS region transcription start site region 132786
Tssr132787 15 94629148 to 94629159 11 + TSS region transcription start site region 132787
Tmem117 15 94629232 to 95096098 466866 + protein coding gene transmembrane protein 117
Tssr132788 15 94629236 to 94629270 34 + TSS region transcription start site region 132788
D15Mit244 15 94629711 to 94629826 115 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 244
Heal4 15 94629711 to 94629826 115 QTL wound healing/regeneration 4
Gm25546 15 94681255 to 94681386 131 - snoRNA gene predicted gene, 25546
Tssr4700 15 94715346 to 94715350 4 + TSS region transcription start site region 4700
Gm31007 15 94889176 to 94891366 2190 - lncRNA gene predicted gene, 31007
Cal5 15 94974879 to 99363692 4388813 heritable phenotypic marker caracul like 5
D15Mit76 15 94974879 to 94975141 262 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 76
Gm23129 15 94987007 to 94987138 131 - snoRNA gene predicted gene, 23129
Tssr132789 15 94996882 to 94996887 5 + TSS region transcription start site region 132789
Gm30953 15 95016055 to 95043012 26957 - lncRNA gene predicted gene, 30953
Gm30810 15 95065985 to 95077331 11346 - lncRNA gene predicted gene, 30810
Tssr132790 15 95095400 to 95095405 5 + TSS region transcription start site region 132790
1700129L04Rik 15 95097622 to 95149318 51696 - sense intronic lncRNA gene RIKEN cDNA 1700129L04 gene
Lfibq27 15 95169142 to 95472472 303330 QTL liver fibrosis QTL 27
Gm31075 15 95176699 to 95203767 27068 - lncRNA gene predicted gene, 31075
Tssr4701 15 95185029 to 95185040 11 - TSS region transcription start site region 4701
Cal6 15 102988123 to 94974879 -8013244 heritable phenotypic marker caracul-like 6