Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:93804232-95921098

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124 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
cmy2 15 81245519 to 95314546 14069027 heritable phenotypic marker cardiomyopathy 2
Tssr132777 15 93804671 to 93804675 4 + TSS region transcription start site region 132777
Gm49445 15 93825038 to 93846738 21700 + lincRNA gene predicted gene, 49445
9430014N10Rik 15 93904856 to 93927111 22255 - lincRNA gene RIKEN cDNA 9430014N10 gene
Tssr135984 15 93927043 to 93927053 10 - TSS region transcription start site region 135984
Gm30564 15 93956722 to 93964708 7986 - lincRNA gene predicted gene, 30564
Gm30609 15 93963066 to 93965619 2553 + lncRNA gene predicted gene, 30609
Tssr132778 15 93996198 to 93996202 4 + TSS region transcription start site region 132778
Gm30665 15 94081266 to 94108083 26817 - lncRNA gene predicted gene, 30665
Gm41388 15 94132239 to 94138271 6032 - lncRNA gene predicted gene, 41388
Tssr4699 15 94137758 to 94137793 35 - TSS region transcription start site region 4699
Tssr132779 15 94205319 to 94205326 7 + TSS region transcription start site region 132779
D630010B17Rik 15 94247202 to 94255606 8404 + lncRNA gene RIKEN cDNA D630010B17 gene
Adamts20 15 94268314 to 94432074 163760 - protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20
D15Mit245 15 94278551 to 94278669 118 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 245
Cpgi7586 15 94349106 to 94349296 190 CpG island CpG island 7586
Cpgi7587 15 94403174 to 94404925 1751 CpG island CpG island 7587
Tssr135985 15 94404288 to 94404327 39 - TSS region transcription start site region 135985
Tssr135986 15 94404339 to 94404371 32 - TSS region transcription start site region 135986
D15Mit272 15 94409002 to 94409125 123 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 272
Pus7l 15 94522688 to 94543547 20859 - protein coding gene pseudouridylate synthase 7-like
Cpgi7588 15 94522891 to 94523621 730 CpG island CpG island 7588
Cpgi7589 15 94543205 to 94544110 905 CpG island CpG island 7589
Tssr135987 15 94543472 to 94543514 42 - TSS region transcription start site region 135987
Tssr132780 15 94543605 to 94543658 53 + TSS region transcription start site region 132780
Irak4 15 94543613 to 94568317 24704 + protein coding gene interleukin-1 receptor-associated kinase 4
Tssr132781 15 94543666 to 94543681 15 + TSS region transcription start site region 132781
Tssr132782 15 94544260 to 94544268 8 + TSS region transcription start site region 132782
Cpgi7590 15 94561490 to 94561725 235 CpG island CpG island 7590
Tssr132783 15 94561583 to 94561597 14 + TSS region transcription start site region 132783
Tssr135988 15 94566026 to 94566035 9 - TSS region transcription start site region 135988
Tssr132784 15 94567074 to 94567080 6 + TSS region transcription start site region 132784
Twf1 15 94577948 to 94589884 11936 - protein coding gene twinfilin actin binding protein 1
Tssr135989 15 94579208 to 94579230 22 - TSS region transcription start site region 135989
Tssr135990 15 94586510 to 94586531 21 - TSS region transcription start site region 135990
Tssr135991 15 94588055 to 94588060 5 - TSS region transcription start site region 135991
Tssr135992 15 94588084 to 94588087 3 - TSS region transcription start site region 135992
Cpgi7591 15 94589267 to 94590019 752 CpG island CpG island 7591
Tssr135993 15 94589807 to 94589828 21 - TSS region transcription start site region 135993
Tssr135994 15 94589832 to 94589864 32 - TSS region transcription start site region 135994
Tssr135995 15 94589870 to 94589881 11 - TSS region transcription start site region 135995
Gm30754 15 94595525 to 94599490 3965 - lncRNA gene predicted gene, 30754
Cpgi7592 15 94628802 to 94629751 949 CpG island CpG island 7592
Tssr132785 15 94628906 to 94628922 16 + TSS region transcription start site region 132785
Tssr132786 15 94629082 to 94629129 47 + TSS region transcription start site region 132786
Tssr132787 15 94629148 to 94629159 11 + TSS region transcription start site region 132787
Tmem117 15 94629232 to 95096098 466866 + protein coding gene transmembrane protein 117
Tssr132788 15 94629236 to 94629270 34 + TSS region transcription start site region 132788
D15Mit244 15 94629711 to 94629826 115 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 244
Heal4 15 94629711 to 94629826 115 QTL wound healing/regeneration 4
Gm25546 15 94681255 to 94681386 131 - snoRNA gene predicted gene, 25546
Tssr4700 15 94715346 to 94715350 4 + TSS region transcription start site region 4700
Gm31007 15 94889176 to 94891366 2190 - lncRNA gene predicted gene, 31007
D15Mit76 15 94974879 to 94975141 262 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 76
Cal5 15 94974879 to 99363692 4388813 heritable phenotypic marker caracul like 5
Gm23129 15 94987007 to 94987138 131 - snoRNA gene predicted gene, 23129
Tssr132789 15 94996882 to 94996887 5 + TSS region transcription start site region 132789
Gm30953 15 95016055 to 95043012 26957 - lncRNA gene predicted gene, 30953
Gm30810 15 95065985 to 95077331 11346 - lncRNA gene predicted gene, 30810
Tssr132790 15 95095400 to 95095405 5 + TSS region transcription start site region 132790
1700129L04Rik 15 95097622 to 95149318 51696 - sense intronic lncRNA gene RIKEN cDNA 1700129L04 gene
Lfibq27 15 95169142 to 95472472 303330 QTL liver fibrosis QTL 27
Gm31075 15 95176699 to 95203767 27068 - lncRNA gene predicted gene, 31075
Tssr4701 15 95185029 to 95185040 11 - TSS region transcription start site region 4701
Nell2 15 95219440 to 95528759 309319 - protein coding gene NEL-like 2
Cpgi7593 15 95228792 to 95229307 515 CpG island CpG island 7593
Gm31370 15 95465402 to 95468447 3045 - lncRNA gene predicted gene, 31370
Cpgi7594 15 95527045 to 95528895 1850 CpG island CpG island 7594
Tssr135996 15 95527959 to 95527973 14 - TSS region transcription start site region 135996
Tssr135997 15 95527978 to 95528014 36 - TSS region transcription start site region 135997
Tssr135998 15 95528078 to 95528123 45 - TSS region transcription start site region 135998
Tssr135999 15 95528124 to 95528192 68 - TSS region transcription start site region 135999
Tssr136000 15 95528228 to 95528266 38 - TSS region transcription start site region 136000
Tssr136001 15 95528429 to 95528445 16 - TSS region transcription start site region 136001
Tssr136002 15 95528542 to 95528565 23 - TSS region transcription start site region 136002
Tssr136003 15 95528577 to 95528640 63 - TSS region transcription start site region 136003
Tssr136004 15 95528702 to 95528777 75 - TSS region transcription start site region 136004
Tssr136005 15 95587051 to 95587084 33 - TSS region transcription start site region 136005
Gm31551 15 95595509 to 95599374 3865 - lncRNA gene predicted gene, 31551
Gm24668 15 95606562 to 95606665 103 - snRNA gene predicted gene, 24668
Dbx2 15 95623563 to 95654771 31208 - protein coding gene developing brain homeobox 2
D15Jpk2 15 95625414 to 95625618 204 DNA segment DNA segment, Chr 15, Japan, Kominami 2
Cpgi7595 15 95654022 to 95654899 877 CpG island CpG island 7595
Tssr4702 15 95654348 to 95654371 23 - TSS region transcription start site region 4702
Tssr132791 15 95654470 to 95654481 11 + TSS region transcription start site region 132791
Gm31690 15 95654568 to 95669237 14669 + lncRNA gene predicted gene, 31690
Tssr136006 15 95654680 to 95654689 9 - TSS region transcription start site region 136006
Tssr136007 15 95654692 to 95654713 21 - TSS region transcription start site region 136007
Tssr136008 15 95654779 to 95654794 15 - TSS region transcription start site region 136008
Tssr136009 15 95654809 to 95654826 17 - TSS region transcription start site region 136009
Tssr4703 15 95705096 to 95705098 2 + TSS region transcription start site region 4703
Gm8843 15 95715193 to 95716294 1101 + pseudogene predicted gene 8843
Gm49169 15 95736415 to 95753732 17317 - lincRNA gene predicted gene, 49169
Gm6961 15 95747247 to 95751591 4344 - lincRNA gene predicted gene 6961
Tssr136010 15 95759244 to 95759248 4 - TSS region transcription start site region 136010
Tssr136011 15 95772623 to 95772638 15 - TSS region transcription start site region 136011
Tssr136012 15 95772644 to 95772655 11 - TSS region transcription start site region 136012
Gm8849 15 95775754 to 95776233 479 + pseudogene predicted gene 8849
A130051J06Rik 15 95787856 to 95791642 3786 - antisense lncRNA gene RIKEN cDNA A130051J0 gene
Cpgi7596 15 95790225 to 95791513 1288 CpG island CpG island 7596
Tssr132792 15 95790831 to 95790859 28 + TSS region transcription start site region 132792
Ano6 15 95790843 to 95974751 183908 + protein coding gene anoctamin 6
Tssr132793 15 95790860 to 95790874 14 + TSS region transcription start site region 132793
Tssr132794 15 95790884 to 95790900 16 + TSS region transcription start site region 132794
Tssr132795 15 95790903 to 95790914 11 + TSS region transcription start site region 132795
Tssr132796 15 95790922 to 95790933 11 + TSS region transcription start site region 132796
Tssr132797 15 95790951 to 95790965 14 + TSS region transcription start site region 132797
Tssr132798 15 95790971 to 95791008 37 + TSS region transcription start site region 132798
Tssr132799 15 95800658 to 95800666 8 + TSS region transcription start site region 132799
Tssr132800 15 95800695 to 95800707 12 + TSS region transcription start site region 132800
Tssr132801 15 95801457 to 95801484 27 + TSS region transcription start site region 132801
Gm49173 15 95802033 to 95804401 2368 - antisense lncRNA gene predicted gene, 49173
Tssr4704 15 95803014 to 95803017 3 + TSS region transcription start site region 4704
Gm17546 15 95824458 to 95830072 5614 - antisense lncRNA gene predicted gene, 17546
Tssr132802 15 95830091 to 95830124 33 + TSS region transcription start site region 132802
Tssr132803 15 95830125 to 95830142 17 + TSS region transcription start site region 132803
Tssr132804 15 95830417 to 95830430 13 + TSS region transcription start site region 132804
Tssr132805 15 95836942 to 95836946 4 + TSS region transcription start site region 132805
Tssr132806 15 95852178 to 95852181 3 + TSS region transcription start site region 132806
Tssr132807 15 95864092 to 95864117 25 + TSS region transcription start site region 132807
Gm25070 15 95879716 to 95879817 101 - miRNA gene predicted gene, 25070
Tssr136013 15 95887504 to 95887537 33 - TSS region transcription start site region 136013
Gm41389 15 95897656 to 95907629 9973 - lncRNA gene predicted gene, 41389
Cal6 15 102988123 to 94974879 -8013244 heritable phenotypic marker caracul-like 6