Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:93406198-94586202

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pphln1 15 93398350 to 93491510 93160 + protein coding gene periphilin 1
Gm30181 15 93412664 to 93413556 892 + pseudogene predicted gene, 30181
Tssr132767 15 93412795 to 93412812 17 + TSS region transcription start site region 132767
Tssr132768 15 93432898 to 93432906 8 + TSS region transcription start site region 132768
Tssr132769 15 93432917 to 93432931 14 + TSS region transcription start site region 132769
Tssr132770 15 93432938 to 93432947 9 + TSS region transcription start site region 132770
Tssr132771 15 93435917 to 93435935 18 + TSS region transcription start site region 132771
Tssr132772 15 93435943 to 93435954 11 + TSS region transcription start site region 132772
Tssr132773 15 93435968 to 93435974 6 + TSS region transcription start site region 132773
Tssr132774 15 93441605 to 93441622 17 + TSS region transcription start site region 132774
Tssr132775 15 93453573 to 93453589 16 + TSS region transcription start site region 132775
Tssr132776 15 93473483 to 93473487 4 + TSS region transcription start site region 132776
Prickle1 15 93499114 to 93595891 96777 - protein coding gene prickle planar cell polarity protein 1
Cpgi7582 15 93503195 to 93503806 611 CpG island CpG island 7582
Cpgi7583 15 93518705 to 93519763 1058 CpG island CpG island 7583
Tssr135976 15 93519470 to 93519483 13 - TSS region transcription start site region 135976
Tssr135977 15 93519499 to 93519526 27 - TSS region transcription start site region 135977
Tssr135978 15 93519552 to 93519564 12 - TSS region transcription start site region 135978
Tssr135979 15 93520201 to 93520217 16 - TSS region transcription start site region 135979
Tssr135980 15 93575169 to 93575201 32 - TSS region transcription start site region 135980
Cpgi7584 15 93594994 to 93596685 1691 CpG island CpG island 7584
Tssr135981 15 93595877 to 93595909 32 - TSS region transcription start site region 135981
Cpgi7585 15 93610277 to 93610537 260 CpG island CpG island 7585
Gm41385 15 93611712 to 93630090 18378 + lncRNA gene predicted gene, 41385
Tssr4698 15 93611779 to 93611785 6 + TSS region transcription start site region 4698
D15Mit108 15 93631166 to 93631303 137 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 108
Gm41387 15 93660175 to 93698646 38471 + lncRNA gene predicted gene, 41387
Zfp42-ps1 15 93679160 to 93679649 489 - pseudogene zinc finger protein 48, pseudogene 1
Tssr135982 15 93679950 to 93679961 11 - TSS region transcription start site region 135982
Gm41386 15 93705313 to 93712769 7456 - lincRNA gene predicted gene, 41386
Tssr135983 15 93712731 to 93712750 19 - TSS region transcription start site region 135983
Gm30339 15 93734413 to 93738490 4077 + lincRNA gene predicted gene, 30339
Tssr132777 15 93804671 to 93804675 4 + TSS region transcription start site region 132777
Gm49445 15 93825038 to 93846738 21700 + lincRNA gene predicted gene, 49445
9430014N10Rik 15 93904856 to 93927111 22255 - lincRNA gene RIKEN cDNA 9430014N10 gene
Tssr135984 15 93927043 to 93927053 10 - TSS region transcription start site region 135984
Gm30564 15 93956722 to 93964708 7986 - lincRNA gene predicted gene, 30564
Gm30609 15 93963066 to 93965619 2553 + lncRNA gene predicted gene, 30609
Tssr132778 15 93996198 to 93996202 4 + TSS region transcription start site region 132778
Gm30665 15 94081266 to 94108083 26817 - lncRNA gene predicted gene, 30665
Gm41388 15 94132239 to 94138271 6032 - lncRNA gene predicted gene, 41388
Tssr4699 15 94137758 to 94137793 35 - TSS region transcription start site region 4699
Tssr132779 15 94205319 to 94205326 7 + TSS region transcription start site region 132779
D630010B17Rik 15 94247202 to 94255606 8404 + lncRNA gene RIKEN cDNA D630010B17 gene
Adamts20 15 94268314 to 94432074 163760 - protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20
D15Mit245 15 94278551 to 94278669 118 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 245
Cpgi7586 15 94349106 to 94349296 190 CpG island CpG island 7586
Cpgi7587 15 94403174 to 94404925 1751 CpG island CpG island 7587
Tssr135985 15 94404288 to 94404327 39 - TSS region transcription start site region 135985
Tssr135986 15 94404339 to 94404371 32 - TSS region transcription start site region 135986
D15Mit272 15 94409002 to 94409125 123 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 272
Pus7l 15 94522688 to 94543547 20859 - protein coding gene pseudouridylate synthase 7-like
Cpgi7588 15 94522891 to 94523621 730 CpG island CpG island 7588
Cpgi7589 15 94543205 to 94544110 905 CpG island CpG island 7589
Tssr135987 15 94543472 to 94543514 42 - TSS region transcription start site region 135987
Tssr132780 15 94543605 to 94543658 53 + TSS region transcription start site region 132780
Irak4 15 94543613 to 94568317 24704 + protein coding gene interleukin-1 receptor-associated kinase 4
Tssr132781 15 94543666 to 94543681 15 + TSS region transcription start site region 132781
Tssr132782 15 94544260 to 94544268 8 + TSS region transcription start site region 132782
Cpgi7590 15 94561490 to 94561725 235 CpG island CpG island 7590
Tssr132783 15 94561583 to 94561597 14 + TSS region transcription start site region 132783
Tssr135988 15 94566026 to 94566035 9 - TSS region transcription start site region 135988
Tssr132784 15 94567074 to 94567080 6 + TSS region transcription start site region 132784
Twf1 15 94577948 to 94589884 11936 - protein coding gene twinfilin actin binding protein 1
Tssr135989 15 94579208 to 94579230 22 - TSS region transcription start site region 135989