Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:92235759-93545895

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cntn1 15 92051165 to 92341967 290802 + protein coding gene contactin 1
Tssr132752 15 92243651 to 92243654 3 + TSS region transcription start site region 132752
Cpgi7570 15 92271181 to 92271432 251 CpG island CpG island 7570
Tssr132753 15 92321882 to 92321895 13 + TSS region transcription start site region 132753
Tssr132754 15 92322073 to 92322076 3 + TSS region transcription start site region 132754
Tssr132755 15 92340332 to 92340352 20 + TSS region transcription start site region 132755
Gm26760 15 92343775 to 92366929 23154 + lincRNA gene predicted gene, 26760
Tssr132756 15 92344365 to 92344383 18 + TSS region transcription start site region 132756
2900072G19Rik 15 92350468 to 92351164 696 unclassified gene RIKEN cDNA 2900072G19 gene
Cpgi7571 15 92396800 to 92397645 845 CpG island CpG island 7571
Pdzrn4 15 92396881 to 92771819 374938 + protein coding gene PDZ domain containing RING finger 4
Tssr4697 15 92396951 to 92396968 17 + TSS region transcription start site region 4697
Tssr132757 15 92486670 to 92486702 32 + TSS region transcription start site region 132757
Cpgi7572 15 92510337 to 92510541 204 CpG island CpG island 7572
AW742948 15 92520479 to 92523958 3479 unclassified gene expressed sequence AW742948
Tssr132758 15 92597104 to 92597121 17 + TSS region transcription start site region 132758
Cpgi7573 15 92597120 to 92597474 354 CpG island CpG island 7573
Tssr132759 15 92597129 to 92597167 38 + TSS region transcription start site region 132759
Tssr132760 15 92701425 to 92701438 13 + TSS region transcription start site region 132760
4930588J15Rik 15 92702886 to 92705955 3069 - antisense lncRNA gene RIKEN cDNA 4930588J15 gene
Tssr135959 15 92705953 to 92705970 17 - TSS region transcription start site region 135959
Cpgi7574 15 92752516 to 92752814 298 CpG island CpG island 7574
Cpgi7575 15 92769557 to 92770161 604 CpG island CpG island 7575
Cpgi7576 15 92770654 to 92770871 217 CpG island CpG island 7576
D15Mit147.2 15 92890608 to 92890799 191 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 147.2
D15Mit192 15 92890738 to 92890913 175 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 192
D15Mit147 15 92890759 to 92890895 136 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 147
D15Mit223 15 92907514 to 92907838 324 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 223
D15Mit223.2 15 92907600 to 92907756 156 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 223.2
D15Mit223.1 15 92907821 to 92907932 111 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 223.1
Gm49418 15 92933889 to 92950171 16282 + lincRNA gene predicted gene, 49418
Gm18815 15 92968815 to 92970297 1482 + pseudogene predicted gene, 18815
Gm30085 15 93001824 to 93007017 5193 + lincRNA gene predicted gene, 30085
Tssr132761 15 93002204 to 93002218 14 + TSS region transcription start site region 132761
D15Mit243 15 93013354 to 93013478 124 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 243
Tssr135960 15 93085412 to 93085419 7 - TSS region transcription start site region 135960
Gm18685 15 93089230 to 93089922 692 + pseudogene predicted gene, 18685
Cpgi7577 15 93115707 to 93115945 238 CpG island CpG island 7577
D15Mit217 15 93123962 to 93124059 97 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 217
Gm49420 15 93134911 to 93137594 2683 - unclassified non-coding RNA gene predicted gene, 49420
Gm38535 15 93165229 to 93204866 39637 - lncRNA gene predicted gene, 38535
Gm4335 15 93196595 to 93197598 1003 + pseudogene predicted gene 4335
Tssr135961 15 93232023 to 93232024 1 - TSS region transcription start site region 135961
Gm24447 15 93234363 to 93234700 337 + unclassified non-coding RNA gene predicted gene, 24447
Gxylt1 15 93239742 to 93275179 35437 - protein coding gene glucoside xylosyltransferase 1
Cpgi7578 15 93266372 to 93266625 253 CpG island CpG island 7578
Tssr135962 15 93270601 to 93270608 7 - TSS region transcription start site region 135962
Cpgi7579 15 93274677 to 93276030 1353 CpG island CpG island 7579
Tssr135963 15 93275122 to 93275143 21 - TSS region transcription start site region 135963
Tssr135964 15 93275154 to 93275178 24 - TSS region transcription start site region 135964
Yaf2 15 93284278 to 93336935 52657 - protein coding gene YY1 associated factor 2
D030074K08Rik 15 93287894 to 93291698 3804 unclassified gene RIKEN cDNA D030074K08 gene
Tssr135965 15 93334989 to 93335004 15 - TSS region transcription start site region 135965
Cpgi7580 15 93335885 to 93337687 1802 CpG island CpG island 7580
Tssr135966 15 93336444 to 93336513 69 - TSS region transcription start site region 135966
Tssr135967 15 93336791 to 93336798 7 - TSS region transcription start site region 135967
Tssr135968 15 93336800 to 93336852 52 - TSS region transcription start site region 135968
Tssr135969 15 93336900 to 93336915 15 - TSS region transcription start site region 135969
Tssr135970 15 93336922 to 93336980 58 - TSS region transcription start site region 135970
Tssr132762 15 93341240 to 93341263 23 + TSS region transcription start site region 132762
Gm26371 15 93344684 to 93344787 103 + snRNA gene predicted gene, 26371
Zcrb1 15 93386106 to 93398301 12195 - protein coding gene zinc finger CCHC-type and RNA binding motif 1
Tssr135971 15 93387842 to 93387861 19 - TSS region transcription start site region 135971
Cpgi7581 15 93397857 to 93398898 1041 CpG island CpG island 7581
Tssr132763 15 93397982 to 93397993 11 + TSS region transcription start site region 132763
Tssr132764 15 93397998 to 93398012 14 + TSS region transcription start site region 132764
Tssr135972 15 93398192 to 93398201 9 - TSS region transcription start site region 135972
Tssr135973 15 93398263 to 93398343 80 - TSS region transcription start site region 135973
Tssr132765 15 93398344 to 93398423 79 + TSS region transcription start site region 132765
Tssr135974 15 93398345 to 93398352 7 - TSS region transcription start site region 135974
Pphln1 15 93398350 to 93491510 93160 + protein coding gene periphilin 1
Tssr132766 15 93398427 to 93398438 11 + TSS region transcription start site region 132766
Tssr135975 15 93398619 to 93398630 11 - TSS region transcription start site region 135975
Gm30181 15 93412664 to 93413556 892 + pseudogene predicted gene, 30181
Tssr132767 15 93412795 to 93412812 17 + TSS region transcription start site region 132767
Tssr132768 15 93432898 to 93432906 8 + TSS region transcription start site region 132768
Tssr132769 15 93432917 to 93432931 14 + TSS region transcription start site region 132769
Tssr132770 15 93432938 to 93432947 9 + TSS region transcription start site region 132770
Tssr132771 15 93435917 to 93435935 18 + TSS region transcription start site region 132771
Tssr132772 15 93435943 to 93435954 11 + TSS region transcription start site region 132772
Tssr132773 15 93435968 to 93435974 6 + TSS region transcription start site region 132773
Tssr132774 15 93441605 to 93441622 17 + TSS region transcription start site region 132774
Tssr132775 15 93453573 to 93453589 16 + TSS region transcription start site region 132775
Tssr132776 15 93473483 to 93473487 4 + TSS region transcription start site region 132776
Prickle1 15 93499114 to 93595891 96777 - protein coding gene prickle planar cell polarity protein 1
Cpgi7582 15 93503195 to 93503806 611 CpG island CpG island 7582
Cpgi7583 15 93518705 to 93519763 1058 CpG island CpG island 7583
Tssr135976 15 93519470 to 93519483 13 - TSS region transcription start site region 135976
Tssr135977 15 93519499 to 93519526 27 - TSS region transcription start site region 135977
Tssr135978 15 93519552 to 93519564 12 - TSS region transcription start site region 135978
Tssr135979 15 93520201 to 93520217 16 - TSS region transcription start site region 135979
Dshv1 15 103517472 to 92890759 -10626713 QTL dorsal hippocampal volume 1