Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:89789453-92609462

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177 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pain1 15 75448997 to 90928982 15479985 QTL pain 1
Alprf 15 87465070 to 90390365 2925295 QTL alcohol preference
Lfibq10 15 87957884 to 90043083 2085199 QTL liver fibrosis QTL 10
Syt10 15 89782393 to 89841860 59467 - protein coding gene synaptotagmin X
Cpgi7559 15 89841311 to 89842125 814 CpG island CpG island 7559
Tssr135919 15 89841803 to 89841814 11 - TSS region transcription start site region 135919
Tssr135920 15 89841893 to 89841923 30 - TSS region transcription start site region 135920
Tssr135921 15 89841924 to 89841935 11 - TSS region transcription start site region 135921
Gm24643 15 89888952 to 89889052 100 - miRNA gene predicted gene, 24643
Gm24415 15 90054409 to 90054515 106 - snRNA gene predicted gene, 24415
D15Mit171 15 90057357 to 90057489 132 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 171
Gm36330 15 90074511 to 90075302 791 + lincRNA gene predicted gene, 36330
Cpgi7560 15 90224012 to 90224769 757 CpG island CpG island 7560
Tssr135922 15 90224109 to 90224159 50 - TSS region transcription start site region 135922
Tssr132702 15 90224277 to 90224291 14 + TSS region transcription start site region 132702
Tssr132703 15 90224293 to 90224374 81 + TSS region transcription start site region 132703
Alg10b 15 90224311 to 90230554 6243 + protein coding gene asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)
Mir7648 15 90224360 to 90224412 52 + miRNA gene microRNA 7648
Tssr132704 15 90224448 to 90224461 13 + TSS region transcription start site region 132704
Tssr132705 15 90303466 to 90303469 3 + TSS region transcription start site region 132705
Tssr135923 15 90316443 to 90316447 4 - TSS region transcription start site region 135923
D15Mit74 15 90334101 to 90334334 233 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 74
4933423N12Rik 15 90345915 to 90346833 918 unclassified gene RIKEN cDNA 4933423N12 gene
Gm36480 15 90353710 to 90368444 14734 + lincRNA gene predicted gene, 36480
D15Mit242 15 90390262 to 90390365 103 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 242
Gm18372 15 90451701 to 90452546 845 - pseudogene predicted gene, 18372
Cpne8 15 90487482 to 90679432 191950 - protein coding gene copine VIII
Tssr135924 15 90545137 to 90545139 2 - TSS region transcription start site region 135924
Aath8 15 90545941 to 90545941 0 QTL aortic arch atherosclerosis 8
Gm6746 15 90561347 to 90561829 482 + pseudogene predicted pseudogene 6746
Tssr4691 15 90610976 to 90610979 3 + TSS region transcription start site region 4691
Tssr135925 15 90678518 to 90678524 6 - TSS region transcription start site region 135925
Cpgi7561 15 90678606 to 90680368 1762 CpG island CpG island 7561
Tssr135926 15 90679307 to 90679388 81 - TSS region transcription start site region 135926
Gm49541 15 90702369 to 90702558 189 + pseudogene predicted gene, 49541
Gm3861 15 90723648 to 90723996 348 + pseudogene predicted gene 3861
D15Mit34 15 90753375 to 90753521 146 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 34
Rpl31-ps8 15 90764279 to 90764656 377 - pseudogene ribosomal protein L31, pseudogene 8
Tssr135927 15 90829817 to 90829818 1 - TSS region transcription start site region 135927
Tcea1-ps1 15 90882615 to 90883518 903 + pseudogene transcription elongation factor A (SII) 1, pseudogene 1
Tssr132706 15 90883047 to 90883056 9 + TSS region transcription start site region 132706
Spn-ps 15 90891396 to 90898476 7080 - pseudogene sialophorin, pseudogene
Tssr135928 15 90898394 to 90898409 15 - TSS region transcription start site region 135928
Tssr135929 15 90898411 to 90898420 9 - TSS region transcription start site region 135929
Tssr135930 15 90898421 to 90898424 3 - TSS region transcription start site region 135930
Tssr135931 15 90898425 to 90898430 5 - TSS region transcription start site region 135931
Tssr135932 15 90898439 to 90898446 7 - TSS region transcription start site region 135932
Tssr135933 15 90898463 to 90898472 9 - TSS region transcription start site region 135933
Tssr135934 15 90898485 to 90898497 12 - TSS region transcription start site region 135934
Tssr135935 15 90898512 to 90898522 10 - TSS region transcription start site region 135935
Tssr135936 15 90898541 to 90898542 1 - TSS region transcription start site region 135936
Tssr135937 15 90915969 to 90915975 6 - TSS region transcription start site region 135937
Gm36618 15 90916161 to 90919638 3477 + lncRNA gene predicted gene, 36618
Kif21a 15 90933276 to 91049948 116672 - protein coding gene kinesin family member 21A
Tssr135938 15 90940680 to 90940706 26 - TSS region transcription start site region 135938
Tssr135939 15 90943617 to 90943641 24 - TSS region transcription start site region 135939
Gm49545 15 90957996 to 90958668 672 + pseudogene predicted gene, 49545
Tssr135940 15 90980990 to 90981002 12 - TSS region transcription start site region 135940
Tssr132707 15 90986232 to 90986233 1 + TSS region transcription start site region 132707
Tssr135941 15 91017982 to 91018005 23 - TSS region transcription start site region 135941
Tssr132708 15 91037495 to 91037501 6 + TSS region transcription start site region 132708
D15Mit191 15 91043721 to 91043920 199 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 191
Tssr135942 15 91048105 to 91048111 6 - TSS region transcription start site region 135942
Cpgi7562 15 91048960 to 91050293 1333 CpG island CpG island 7562
Tssr135943 15 91049823 to 91049867 44 - TSS region transcription start site region 135943
Tssr135944 15 91050225 to 91050237 12 - TSS region transcription start site region 135944
Gm36710 15 91050723 to 91051053 330 - lncRNA gene predicted gene, 36710
Gm18814 15 91074162 to 91075149 987 + pseudogene predicted gene, 18814
Cpgi7563 15 91105965 to 91106259 294 CpG island CpG island 7563
Gm7167 15 91128728 to 91129897 1169 - pseudogene predicted gene 7167
Abcd2 15 91145871 to 91191799 45928 - protein coding gene ATP-binding cassette, sub-family D (ALD), member 2
Tssr135945 15 91172187 to 91172192 5 - TSS region transcription start site region 135945
Tssr135946 15 91190985 to 91190994 9 - TSS region transcription start site region 135946
Tssr135947 15 91191385 to 91191401 16 - TSS region transcription start site region 135947
Tssr135948 15 91191405 to 91191432 27 - TSS region transcription start site region 135948
Tssr135949 15 91191440 to 91191455 15 - TSS region transcription start site region 135949
Tssr135950 15 91191513 to 91191525 12 - TSS region transcription start site region 135950
Tssr135951 15 91191711 to 91191722 11 - TSS region transcription start site region 135951
Tssr135952 15 91191733 to 91191825 92 - TSS region transcription start site region 135952
Tssr135953 15 91192010 to 91192027 17 - TSS region transcription start site region 135953
Tssr135954 15 91192032 to 91192050 18 - TSS region transcription start site region 135954
Cpgi7564 15 91199304 to 91199683 379 CpG island CpG island 7564
Tssr132709 15 91199453 to 91199462 9 + TSS region transcription start site region 132709
Tssr132710 15 91199476 to 91199497 21 + TSS region transcription start site region 132710
CN725425 15 91199494 to 91260894 61400 + protein coding gene cDNA sequence CN725425
D15Mit172 15 91202080 to 91202217 137 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 172
Slc2a13 15 91267696 to 91573261 305565 - protein coding gene solute carrier family 2 (facilitated glucose transporter), member 13
Cpgi7565 15 91272055 to 91272434 379 CpG island CpG island 7565
Cpgi7566 15 91284609 to 91285076 467 CpG island CpG island 7566
E330019L11Rik 15 91315281 to 91316984 1703 unclassified gene RIKEN cDNA E330019L11 gene
Gm15383 15 91530924 to 91532333 1409 - pseudogene predicted gene 15383
Tssr135955 15 91548704 to 91548712 8 - TSS region transcription start site region 135955
D15Ertd492e 15 91550924 to 91551128 204 DNA segment DNA segment, Chr 15, ERATO Doi 492, expressed
Gm15381 15 91556765 to 91557908 1143 - pseudogene predicted gene 15381
Gm24647 15 91559671 to 91559783 112 - rRNA gene predicted gene, 24647
Cpgi7567 15 91572259 to 91573668 1409 CpG island CpG island 7567
Tssr135956 15 91573181 to 91573245 64 - TSS region transcription start site region 135956
4933438A12Rik 15 91597583 to 91604676 7093 + lincRNA gene RIKEN cDNA 4933438A12 gene
Gm25389 15 91617152 to 91617437 285 - unclassified non-coding RNA gene predicted gene, 25389
Tssr135957 15 91632514 to 91632529 15 - TSS region transcription start site region 135957
Tssr4692 15 91633120 to 91633149 29 - TSS region transcription start site region 4692
Tssr4693 15 91633381 to 91633396 15 + TSS region transcription start site region 4693
Tssr4694 15 91641859 to 91641866 7 + TSS region transcription start site region 4694
Tssr132711 15 91641893 to 91641906 13 + TSS region transcription start site region 132711
Tssr132712 15 91641911 to 91641918 7 + TSS region transcription start site region 132712
Tssr132713 15 91641921 to 91641940 19 + TSS region transcription start site region 132713
Tssr132714 15 91641953 to 91641964 11 + TSS region transcription start site region 132714
Tssr4695 15 91641973 to 91641978 5 + TSS region transcription start site region 4695
Tssr135958 15 91643084 to 91643087 3 - TSS region transcription start site region 135958
Tssr132715 15 91644004 to 91644013 9 + TSS region transcription start site region 132715
Tssr132716 15 91672232 to 91672250 18 + TSS region transcription start site region 132716
Cpgi7568 15 91673006 to 91673455 449 CpG island CpG island 7568
Tssr132717 15 91673050 to 91673059 9 + TSS region transcription start site region 132717
Tssr132718 15 91673060 to 91673076 16 + TSS region transcription start site region 132718
Tssr132719 15 91673082 to 91673105 23 + TSS region transcription start site region 132719
Tssr132720 15 91673130 to 91673141 11 + TSS region transcription start site region 132720
Lrrk2 15 91673175 to 91816120 142945 + protein coding gene leucine-rich repeat kinase 2
Tssr132721 15 91673185 to 91673268 83 + TSS region transcription start site region 132721
Tssr132722 15 91673281 to 91673293 12 + TSS region transcription start site region 132722
Tssr4696 15 91673338 to 91673347 9 + TSS region transcription start site region 4696
Tssr132723 15 91673372 to 91673383 11 + TSS region transcription start site region 132723
Tssr132724 15 91673493 to 91673507 14 + TSS region transcription start site region 132724
Tssr132725 15 91677016 to 91677020 4 + TSS region transcription start site region 132725
D15Mit281 15 91684840 to 91684957 117 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology-281
Tssr132726 15 91706593 to 91706605 12 + TSS region transcription start site region 132726
Tssr132727 15 91706718 to 91706721 3 + TSS region transcription start site region 132727
Tssr132728 15 91771369 to 91771374 5 + TSS region transcription start site region 132728
Tssr132729 15 91772274 to 91772283 9 + TSS region transcription start site region 132729
Gm15382 15 91822705 to 91823220 515 + pseudogene predicted gene 15382
Tssr132730 15 91838255 to 91838265 10 + TSS region transcription start site region 132730
Tssr132731 15 91838322 to 91838332 10 + TSS region transcription start site region 132731
Muc19 15 91838326 to 91934555 96229 + protein coding gene mucin 19
Smgc 15 91838328 to 91861435 23107 + protein coding gene submandibular gland protein C
Tssr132732 15 91898093 to 91898100 7 + TSS region transcription start site region 132732
Tssr132733 15 91899374 to 91899384 10 + TSS region transcription start site region 132733
Tssr132734 15 91899417 to 91899422 5 + TSS region transcription start site region 132734
Tssr132735 15 91906533 to 91906570 37 + TSS region transcription start site region 132735
Gm18979 15 91960740 to 91963518 2778 + pseudogene predicted gene, 18979
Gm3888 15 92026359 to 92027598 1239 - pseudogene predicted gene 3888
Cpgi7569 15 92051089 to 92051957 868 CpG island CpG island 7569
Tssr132736 15 92051153 to 92051170 17 + TSS region transcription start site region 132736
Cntn1 15 92051165 to 92341967 290802 + protein coding gene contactin 1
Tssr132737 15 92051176 to 92051225 49 + TSS region transcription start site region 132737
Tssr132738 15 92051236 to 92051243 7 + TSS region transcription start site region 132738
Tssr132739 15 92051255 to 92051262 7 + TSS region transcription start site region 132739
Tssr132740 15 92051277 to 92051288 11 + TSS region transcription start site region 132740
Tssr132741 15 92054155 to 92054157 2 + TSS region transcription start site region 132741
Tssr132742 15 92160685 to 92160696 11 + TSS region transcription start site region 132742
Tssr132743 15 92161164 to 92161221 57 + TSS region transcription start site region 132743
Tssr132744 15 92161238 to 92161311 73 + TSS region transcription start site region 132744
Tssr132745 15 92161321 to 92161339 18 + TSS region transcription start site region 132745
Tssr132746 15 92161343 to 92161366 23 + TSS region transcription start site region 132746
Tssr132747 15 92161410 to 92161431 21 + TSS region transcription start site region 132747
Tssr132748 15 92161444 to 92161461 17 + TSS region transcription start site region 132748
Tssr132749 15 92161464 to 92161482 18 + TSS region transcription start site region 132749
Tssr132750 15 92161535 to 92161551 16 + TSS region transcription start site region 132750
Tssr132751 15 92161563 to 92161581 18 + TSS region transcription start site region 132751
Gm36901 15 92170457 to 92201076 30619 - lncRNA gene predicted gene, 36901
C230079E05Rik 15 92173182 to 92177369 4187 unclassified gene RIKEN cDNA C230079E05 gene
D15Dcr7 15 92207057 to 92207152 95 DNA segment DNA Segment, Chr 15, Derry C. Roopenian 7
Tssr132752 15 92243651 to 92243654 3 + TSS region transcription start site region 132752
Cpgi7570 15 92271181 to 92271432 251 CpG island CpG island 7570
Tssr132753 15 92321882 to 92321895 13 + TSS region transcription start site region 132753
Tssr132754 15 92322073 to 92322076 3 + TSS region transcription start site region 132754
Tssr132755 15 92340332 to 92340352 20 + TSS region transcription start site region 132755
Gm26760 15 92343775 to 92366929 23154 + lincRNA gene predicted gene, 26760
Tssr132756 15 92344365 to 92344383 18 + TSS region transcription start site region 132756
2900072G19Rik 15 92350468 to 92351164 696 unclassified gene RIKEN cDNA 2900072G19 gene
Cpgi7571 15 92396800 to 92397645 845 CpG island CpG island 7571
Pdzrn4 15 92396881 to 92771819 374938 + protein coding gene PDZ domain containing RING finger 4
Tssr4697 15 92396951 to 92396968 17 + TSS region transcription start site region 4697
Tssr132757 15 92486670 to 92486702 32 + TSS region transcription start site region 132757
Cpgi7572 15 92510337 to 92510541 204 CpG island CpG island 7572
AW742948 15 92520479 to 92523958 3479 unclassified gene expressed sequence AW742948
Tssr132758 15 92597104 to 92597121 17 + TSS region transcription start site region 132758
Cpgi7573 15 92597120 to 92597474 354 CpG island CpG island 7573
Tssr132759 15 92597129 to 92597167 38 + TSS region transcription start site region 132759