Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:89701701-91202546

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pain1 15 75448997 to 90928982 15479985 QTL pain 1
Alprf 15 87465070 to 90390365 2925295 QTL alcohol preference
Lfibq10 15 87957884 to 90043083 2085199 QTL liver fibrosis QTL 10
Gm18476 15 89735961 to 89736517 556 - pseudogene predicted gene, 18476
Tssr132701 15 89765320 to 89765323 3 + TSS region transcription start site region 132701
Gm19378 15 89767489 to 89768889 1400 + lncRNA gene predicted gene, 19378
Syt10 15 89782393 to 89841860 59467 - protein coding gene synaptotagmin X
Cpgi7559 15 89841311 to 89842125 814 CpG island CpG island 7559
Tssr135919 15 89841803 to 89841814 11 - TSS region transcription start site region 135919
Tssr135920 15 89841893 to 89841923 30 - TSS region transcription start site region 135920
Tssr135921 15 89841924 to 89841935 11 - TSS region transcription start site region 135921
Gm24643 15 89888952 to 89889052 100 - miRNA gene predicted gene, 24643
Gm24415 15 90054409 to 90054515 106 - snRNA gene predicted gene, 24415
D15Mit171 15 90057357 to 90057489 132 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 171
Gm36330 15 90074511 to 90075302 791 + lincRNA gene predicted gene, 36330
Cpgi7560 15 90224012 to 90224769 757 CpG island CpG island 7560
Tssr135922 15 90224109 to 90224159 50 - TSS region transcription start site region 135922
Tssr132702 15 90224277 to 90224291 14 + TSS region transcription start site region 132702
Tssr132703 15 90224293 to 90224374 81 + TSS region transcription start site region 132703
Alg10b 15 90224311 to 90230554 6243 + protein coding gene asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)
Mir7648 15 90224360 to 90224412 52 + miRNA gene microRNA 7648
Tssr132704 15 90224448 to 90224461 13 + TSS region transcription start site region 132704
Tssr132705 15 90303466 to 90303469 3 + TSS region transcription start site region 132705
Tssr135923 15 90316443 to 90316447 4 - TSS region transcription start site region 135923
D15Mit74 15 90334101 to 90334334 233 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 74
4933423N12Rik 15 90345915 to 90346833 918 unclassified gene RIKEN cDNA 4933423N12 gene
Gm36480 15 90353710 to 90368444 14734 + lincRNA gene predicted gene, 36480
D15Mit242 15 90390262 to 90390365 103 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 242
Gm18372 15 90451701 to 90452546 845 - pseudogene predicted gene, 18372
Cpne8 15 90487482 to 90679432 191950 - protein coding gene copine VIII
Tssr135924 15 90545137 to 90545139 2 - TSS region transcription start site region 135924
Aath8 15 90545941 to 90545941 0 QTL aortic arch atherosclerosis 8
Gm6746 15 90561347 to 90561829 482 + pseudogene predicted pseudogene 6746
Tssr4691 15 90610976 to 90610979 3 + TSS region transcription start site region 4691
Tssr135925 15 90678518 to 90678524 6 - TSS region transcription start site region 135925
Cpgi7561 15 90678606 to 90680368 1762 CpG island CpG island 7561
Tssr135926 15 90679307 to 90679388 81 - TSS region transcription start site region 135926
Gm49541 15 90702369 to 90702558 189 + pseudogene predicted gene, 49541
Gm3861 15 90723648 to 90723996 348 + pseudogene predicted gene 3861
D15Mit34 15 90753375 to 90753521 146 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 34
Rpl31-ps8 15 90764279 to 90764656 377 - pseudogene ribosomal protein L31, pseudogene 8
Tssr135927 15 90829817 to 90829818 1 - TSS region transcription start site region 135927
Tcea1-ps1 15 90882615 to 90883518 903 + pseudogene transcription elongation factor A (SII) 1, pseudogene 1
Tssr132706 15 90883047 to 90883056 9 + TSS region transcription start site region 132706
Spn-ps 15 90891396 to 90898476 7080 - pseudogene sialophorin, pseudogene
Tssr135928 15 90898394 to 90898409 15 - TSS region transcription start site region 135928
Tssr135929 15 90898411 to 90898420 9 - TSS region transcription start site region 135929
Tssr135930 15 90898421 to 90898424 3 - TSS region transcription start site region 135930
Tssr135931 15 90898425 to 90898430 5 - TSS region transcription start site region 135931
Tssr135932 15 90898439 to 90898446 7 - TSS region transcription start site region 135932
Tssr135933 15 90898463 to 90898472 9 - TSS region transcription start site region 135933
Tssr135934 15 90898485 to 90898497 12 - TSS region transcription start site region 135934
Tssr135935 15 90898512 to 90898522 10 - TSS region transcription start site region 135935
Tssr135936 15 90898541 to 90898542 1 - TSS region transcription start site region 135936
Tssr135937 15 90915969 to 90915975 6 - TSS region transcription start site region 135937
Gm36618 15 90916161 to 90919638 3477 + lncRNA gene predicted gene, 36618
Kif21a 15 90933276 to 91049948 116672 - protein coding gene kinesin family member 21A
Tssr135938 15 90940680 to 90940706 26 - TSS region transcription start site region 135938
Tssr135939 15 90943617 to 90943641 24 - TSS region transcription start site region 135939
Gm49545 15 90957996 to 90958668 672 + pseudogene predicted gene, 49545
Tssr135940 15 90980990 to 90981002 12 - TSS region transcription start site region 135940
Tssr132707 15 90986232 to 90986233 1 + TSS region transcription start site region 132707
Tssr135941 15 91017982 to 91018005 23 - TSS region transcription start site region 135941
Tssr132708 15 91037495 to 91037501 6 + TSS region transcription start site region 132708
D15Mit191 15 91043721 to 91043920 199 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 191
Tssr135942 15 91048105 to 91048111 6 - TSS region transcription start site region 135942
Cpgi7562 15 91048960 to 91050293 1333 CpG island CpG island 7562
Tssr135943 15 91049823 to 91049867 44 - TSS region transcription start site region 135943
Tssr135944 15 91050225 to 91050237 12 - TSS region transcription start site region 135944
Gm36710 15 91050723 to 91051053 330 - lncRNA gene predicted gene, 36710
Gm18814 15 91074162 to 91075149 987 + pseudogene predicted gene, 18814
Cpgi7563 15 91105965 to 91106259 294 CpG island CpG island 7563
Gm7167 15 91128728 to 91129897 1169 - pseudogene predicted gene 7167
Abcd2 15 91145871 to 91191799 45928 - protein coding gene ATP-binding cassette, sub-family D (ALD), member 2
Tssr135945 15 91172187 to 91172192 5 - TSS region transcription start site region 135945
Tssr135946 15 91190985 to 91190994 9 - TSS region transcription start site region 135946
Tssr135947 15 91191385 to 91191401 16 - TSS region transcription start site region 135947
Tssr135948 15 91191405 to 91191432 27 - TSS region transcription start site region 135948
Tssr135949 15 91191440 to 91191455 15 - TSS region transcription start site region 135949
Tssr135950 15 91191513 to 91191525 12 - TSS region transcription start site region 135950
Tssr135951 15 91191711 to 91191722 11 - TSS region transcription start site region 135951
Tssr135952 15 91191733 to 91191825 92 - TSS region transcription start site region 135952
Tssr135953 15 91192010 to 91192027 17 - TSS region transcription start site region 135953
Tssr135954 15 91192032 to 91192050 18 - TSS region transcription start site region 135954
Cpgi7564 15 91199304 to 91199683 379 CpG island CpG island 7564
Tssr132709 15 91199453 to 91199462 9 + TSS region transcription start site region 132709
Tssr132710 15 91199476 to 91199497 21 + TSS region transcription start site region 132710
CN725425 15 91199494 to 91260894 61400 + protein coding gene cDNA sequence CN725425
D15Mit172 15 91202080 to 91202217 137 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 172