Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:89510961-89961517

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37 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shank3 15 89499705 to 89560261 60556 + protein coding gene SH3 and multiple ankyrin repeat domains 3
Gm15609 15 89520096 to 89523677 3581 - lincRNA gene predicted gene 15609
Cpgi7553 15 89523269 to 89524854 1585 CpG island CpG island 7553
Tssr135913 15 89523634 to 89523645 11 - TSS region transcription start site region 135913
Tssr135914 15 89523690 to 89523710 20 - TSS region transcription start site region 135914
Tssr132692 15 89523707 to 89523743 36 + TSS region transcription start site region 132692
Tssr132693 15 89523752 to 89523793 41 + TSS region transcription start site region 132693
Cpgi7554 15 89532730 to 89532973 243 CpG island CpG island 7554
Tssr132694 15 89532816 to 89532870 54 + TSS region transcription start site region 132694
Tssr4690 15 89542585 to 89542588 3 + TSS region transcription start site region 4690
Cpgi7555 15 89547406 to 89548897 1491 CpG island CpG island 7555
Tssr132695 15 89548474 to 89548498 24 + TSS region transcription start site region 132695
Tssr132696 15 89553310 to 89553314 4 + TSS region transcription start site region 132696
Cpgi7556 15 89557639 to 89558497 858 CpG island CpG island 7556
Gm36221 15 89567167 to 89568205 1038 - lncRNA gene predicted gene, 36221
Tssr135915 15 89568233 to 89568238 5 - TSS region transcription start site region 135915
Tssr135916 15 89568242 to 89568257 15 - TSS region transcription start site region 135916
Tssr135917 15 89568264 to 89568274 10 - TSS region transcription start site region 135917
Tssr132697 15 89568322 to 89568325 3 + TSS region transcription start site region 132697
Acr 15 89568326 to 89574585 6259 + protein coding gene acrosin prepropeptide
Tssr132698 15 89568327 to 89568383 56 + TSS region transcription start site region 132698
Tssr132699 15 89573905 to 89573915 10 + TSS region transcription start site region 132699
Cpgi7557 15 89574002 to 89574156 154 CpG island CpG island 7557
Tssr132700 15 89574187 to 89574202 15 + TSS region transcription start site region 132700
Rabl2 15 89582533 to 89591923 9390 - protein coding gene RAB, member RAS oncogene family-like 2
Cpgi7558 15 89591262 to 89592103 841 CpG island CpG island 7558
Tssr135918 15 89591855 to 89591916 61 - TSS region transcription start site region 135918
D15Jmp13 15 89644099 to 89644344 245 DNA segment DNA segment, Chr 15, Jackson Laboratory Mapping Panels 13
Gm18476 15 89735961 to 89736517 556 - pseudogene predicted gene, 18476
Tssr132701 15 89765320 to 89765323 3 + TSS region transcription start site region 132701
Gm19378 15 89767489 to 89768889 1400 + lncRNA gene predicted gene, 19378
Syt10 15 89782393 to 89841860 59467 - protein coding gene synaptotagmin X
Cpgi7559 15 89841311 to 89842125 814 CpG island CpG island 7559
Tssr135919 15 89841803 to 89841814 11 - TSS region transcription start site region 135919
Tssr135920 15 89841893 to 89841923 30 - TSS region transcription start site region 135920
Tssr135921 15 89841924 to 89841935 11 - TSS region transcription start site region 135921
Gm24643 15 89888952 to 89889052 100 - miRNA gene predicted gene, 24643