Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:89454012-90994769

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125 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pain1 15 75448997 to 90928982 15479985 QTL pain 1
Alprf 15 87465070 to 90390365 2925295 QTL alcohol preference
Lfibq10 15 87957884 to 90043083 2085199 QTL liver fibrosis QTL 10
Cpgi7548 15 89453463 to 89454584 1121 CpG island CpG island 7548
Mapk8ip2 15 89453911 to 89462447 8536 + protein coding gene mitogen-activated protein kinase 8 interacting protein 2
Tssr132677 15 89454019 to 89454095 76 + TSS region transcription start site region 132677
Tssr132678 15 89454107 to 89454114 7 + TSS region transcription start site region 132678
Tssr132679 15 89454124 to 89454145 21 + TSS region transcription start site region 132679
Tssr132680 15 89454168 to 89454217 49 + TSS region transcription start site region 132680
Tssr135902 15 89456677 to 89456689 12 - TSS region transcription start site region 135902
Tssr132681 15 89456733 to 89456738 5 + TSS region transcription start site region 132681
Cpgi7549 15 89457243 to 89458313 1070 CpG island CpG island 7549
Cpgi7550 15 89458891 to 89459275 384 CpG island CpG island 7550
Arsa 15 89472476 to 89477424 4948 - protein coding gene arylsulfatase A
Cpgi7551 15 89475947 to 89476555 608 CpG island CpG island 7551
Tssr135903 15 89476092 to 89476138 46 - TSS region transcription start site region 135903
Tssr135904 15 89476140 to 89476184 44 - TSS region transcription start site region 135904
C230037L18Rik 15 89476252 to 89484850 8598 + antisense lncRNA gene RIKEN cDNA C230037L18 gene
Tssr135905 15 89476317 to 89476328 11 - TSS region transcription start site region 135905
Tssr135906 15 89476342 to 89476370 28 - TSS region transcription start site region 135906
Tssr135907 15 89476386 to 89476391 5 - TSS region transcription start site region 135907
Tssr135908 15 89476404 to 89476407 3 - TSS region transcription start site region 135908
Tssr135909 15 89476485 to 89476525 40 - TSS region transcription start site region 135909
Tssr135910 15 89477058 to 89477085 27 - TSS region transcription start site region 135910
Tssr135911 15 89477400 to 89477420 20 - TSS region transcription start site region 135911
Tssr135912 15 89477439 to 89477450 11 - TSS region transcription start site region 135912
Gm41381 15 89497719 to 89499469 1750 + lncRNA gene predicted gene, 41381
Tssr132682 15 89497919 to 89497934 15 + TSS region transcription start site region 132682
Tssr132683 15 89497959 to 89497968 9 + TSS region transcription start site region 132683
Tssr132684 15 89497983 to 89497994 11 + TSS region transcription start site region 132684
Tssr132685 15 89498002 to 89498012 10 + TSS region transcription start site region 132685
Tssr132686 15 89498013 to 89498046 33 + TSS region transcription start site region 132686
Tssr132687 15 89498048 to 89498069 21 + TSS region transcription start site region 132687
Cpgi7552 15 89498463 to 89500828 2365 CpG island CpG island 7552
Tssr132688 15 89499598 to 89499653 55 + TSS region transcription start site region 132688
Shank3 15 89499705 to 89560261 60556 + protein coding gene SH3 and multiple ankyrin repeat domains 3
Tssr132689 15 89499918 to 89499922 4 + TSS region transcription start site region 132689
Tssr132690 15 89500069 to 89500108 39 + TSS region transcription start site region 132690
Tssr132691 15 89500116 to 89500145 29 + TSS region transcription start site region 132691
Gm15609 15 89520096 to 89523677 3581 - lincRNA gene predicted gene 15609
Cpgi7553 15 89523269 to 89524854 1585 CpG island CpG island 7553
Tssr135913 15 89523634 to 89523645 11 - TSS region transcription start site region 135913
Tssr135914 15 89523690 to 89523710 20 - TSS region transcription start site region 135914
Tssr132692 15 89523707 to 89523743 36 + TSS region transcription start site region 132692
Tssr132693 15 89523752 to 89523793 41 + TSS region transcription start site region 132693
Cpgi7554 15 89532730 to 89532973 243 CpG island CpG island 7554
Tssr132694 15 89532816 to 89532870 54 + TSS region transcription start site region 132694
Tssr4690 15 89542585 to 89542588 3 + TSS region transcription start site region 4690
Cpgi7555 15 89547406 to 89548897 1491 CpG island CpG island 7555
Tssr132695 15 89548474 to 89548498 24 + TSS region transcription start site region 132695
Tssr132696 15 89553310 to 89553314 4 + TSS region transcription start site region 132696
Cpgi7556 15 89557639 to 89558497 858 CpG island CpG island 7556
Gm36221 15 89567167 to 89568205 1038 - lncRNA gene predicted gene, 36221
Tssr135915 15 89568233 to 89568238 5 - TSS region transcription start site region 135915
Tssr135916 15 89568242 to 89568257 15 - TSS region transcription start site region 135916
Tssr135917 15 89568264 to 89568274 10 - TSS region transcription start site region 135917
Tssr132697 15 89568322 to 89568325 3 + TSS region transcription start site region 132697
Acr 15 89568326 to 89574585 6259 + protein coding gene acrosin prepropeptide
Tssr132698 15 89568327 to 89568383 56 + TSS region transcription start site region 132698
Tssr132699 15 89573905 to 89573915 10 + TSS region transcription start site region 132699
Cpgi7557 15 89574002 to 89574156 154 CpG island CpG island 7557
Tssr132700 15 89574187 to 89574202 15 + TSS region transcription start site region 132700
Rabl2 15 89582533 to 89591923 9390 - protein coding gene RAB, member RAS oncogene family-like 2
Cpgi7558 15 89591262 to 89592103 841 CpG island CpG island 7558
Tssr135918 15 89591855 to 89591916 61 - TSS region transcription start site region 135918
D15Jmp13 15 89644099 to 89644344 245 DNA segment DNA segment, Chr 15, Jackson Laboratory Mapping Panels 13
Gm18476 15 89735961 to 89736517 556 - pseudogene predicted gene, 18476
Tssr132701 15 89765320 to 89765323 3 + TSS region transcription start site region 132701
Gm19378 15 89767489 to 89768889 1400 + lncRNA gene predicted gene, 19378
Syt10 15 89782393 to 89841860 59467 - protein coding gene synaptotagmin X
Cpgi7559 15 89841311 to 89842125 814 CpG island CpG island 7559
Tssr135919 15 89841803 to 89841814 11 - TSS region transcription start site region 135919
Tssr135920 15 89841893 to 89841923 30 - TSS region transcription start site region 135920
Tssr135921 15 89841924 to 89841935 11 - TSS region transcription start site region 135921
Gm24643 15 89888952 to 89889052 100 - miRNA gene predicted gene, 24643
Gm24415 15 90054409 to 90054515 106 - snRNA gene predicted gene, 24415
D15Mit171 15 90057357 to 90057489 132 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 171
Gm36330 15 90074511 to 90075302 791 + lincRNA gene predicted gene, 36330
Cpgi7560 15 90224012 to 90224769 757 CpG island CpG island 7560
Tssr135922 15 90224109 to 90224159 50 - TSS region transcription start site region 135922
Tssr132702 15 90224277 to 90224291 14 + TSS region transcription start site region 132702
Tssr132703 15 90224293 to 90224374 81 + TSS region transcription start site region 132703
Alg10b 15 90224311 to 90230554 6243 + protein coding gene asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)
Mir7648 15 90224360 to 90224412 52 + miRNA gene microRNA 7648
Tssr132704 15 90224448 to 90224461 13 + TSS region transcription start site region 132704
Tssr132705 15 90303466 to 90303469 3 + TSS region transcription start site region 132705
Tssr135923 15 90316443 to 90316447 4 - TSS region transcription start site region 135923
D15Mit74 15 90334101 to 90334334 233 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 74
4933423N12Rik 15 90345915 to 90346833 918 unclassified gene RIKEN cDNA 4933423N12 gene
Gm36480 15 90353710 to 90368444 14734 + lincRNA gene predicted gene, 36480
D15Mit242 15 90390262 to 90390365 103 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 242
Gm18372 15 90451701 to 90452546 845 - pseudogene predicted gene, 18372
Cpne8 15 90487482 to 90679432 191950 - protein coding gene copine VIII
Tssr135924 15 90545137 to 90545139 2 - TSS region transcription start site region 135924
Aath8 15 90545941 to 90545941 0 QTL aortic arch atherosclerosis 8
Gm6746 15 90561347 to 90561829 482 + pseudogene predicted pseudogene 6746
Tssr4691 15 90610976 to 90610979 3 + TSS region transcription start site region 4691
Tssr135925 15 90678518 to 90678524 6 - TSS region transcription start site region 135925
Cpgi7561 15 90678606 to 90680368 1762 CpG island CpG island 7561
Tssr135926 15 90679307 to 90679388 81 - TSS region transcription start site region 135926
Gm49541 15 90702369 to 90702558 189 + pseudogene predicted gene, 49541
Gm3861 15 90723648 to 90723996 348 + pseudogene predicted gene 3861
D15Mit34 15 90753375 to 90753521 146 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 34
Rpl31-ps8 15 90764279 to 90764656 377 - pseudogene ribosomal protein L31, pseudogene 8
Tssr135927 15 90829817 to 90829818 1 - TSS region transcription start site region 135927
Tcea1-ps1 15 90882615 to 90883518 903 + pseudogene transcription elongation factor A (SII) 1, pseudogene 1
Tssr132706 15 90883047 to 90883056 9 + TSS region transcription start site region 132706
Spn-ps 15 90891396 to 90898476 7080 - pseudogene sialophorin, pseudogene
Tssr135928 15 90898394 to 90898409 15 - TSS region transcription start site region 135928
Tssr135929 15 90898411 to 90898420 9 - TSS region transcription start site region 135929
Tssr135930 15 90898421 to 90898424 3 - TSS region transcription start site region 135930
Tssr135931 15 90898425 to 90898430 5 - TSS region transcription start site region 135931
Tssr135932 15 90898439 to 90898446 7 - TSS region transcription start site region 135932
Tssr135933 15 90898463 to 90898472 9 - TSS region transcription start site region 135933
Tssr135934 15 90898485 to 90898497 12 - TSS region transcription start site region 135934
Tssr135935 15 90898512 to 90898522 10 - TSS region transcription start site region 135935
Tssr135936 15 90898541 to 90898542 1 - TSS region transcription start site region 135936
Tssr135937 15 90915969 to 90915975 6 - TSS region transcription start site region 135937
Gm36618 15 90916161 to 90919638 3477 + lncRNA gene predicted gene, 36618
Kif21a 15 90933276 to 91049948 116672 - protein coding gene kinesin family member 21A
Tssr135938 15 90940680 to 90940706 26 - TSS region transcription start site region 135938
Tssr135939 15 90943617 to 90943641 24 - TSS region transcription start site region 135939
Gm49545 15 90957996 to 90958668 672 + pseudogene predicted gene, 49545
Tssr135940 15 90980990 to 90981002 12 - TSS region transcription start site region 135940
Tssr132707 15 90986232 to 90986233 1 + TSS region transcription start site region 132707