Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:89348707-89698743

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140 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D15Jmp11 15 89349297 to 89349493 196 DNA segment DNA segment, Chr 15, Jackson Laboratory Mapping Panels 11
Lmf2 15 89351004 to 89355659 4655 - protein coding gene lipase maturation factor 2
Cpgi7540 15 89355203 to 89356050 847 CpG island CpG island 7540
Tssr135865 15 89355468 to 89355498 30 - TSS region transcription start site region 135865
Tssr135866 15 89355529 to 89355632 103 - TSS region transcription start site region 135866
Tssr135867 15 89355655 to 89355668 13 - TSS region transcription start site region 135867
Tssr132660 15 89355716 to 89355727 11 + TSS region transcription start site region 132660
Ncaph2 15 89355719 to 89372826 17107 + protein coding gene non-SMC condensin II complex, subunit H2
Tssr132661 15 89355730 to 89355741 11 + TSS region transcription start site region 132661
Tssr132662 15 89355755 to 89355782 27 + TSS region transcription start site region 132662
Tssr135868 15 89356451 to 89356458 7 - TSS region transcription start site region 135868
Tssr132663 15 89370526 to 89370543 17 + TSS region transcription start site region 132663
Sco2 15 89371637 to 89373818 2181 - protein coding gene SCO2 cytochrome c oxidase assembly protein
Tymp 15 89371931 to 89377036 5105 - protein coding gene thymidine phosphorylase
Cpgi7541 15 89373331 to 89374434 1103 CpG island CpG island 7541
4930423K06Rik 15 89373625 to 89375717 2092 unclassified non-coding RNA gene RIKEN cDNA 4930423K06 gene
Tssr135869 15 89373810 to 89373829 19 - TSS region transcription start site region 135869
Tssr135870 15 89373831 to 89373860 29 - TSS region transcription start site region 135870
Tssr135871 15 89373865 to 89373901 36 - TSS region transcription start site region 135871
Tssr132664 15 89373903 to 89373928 25 + TSS region transcription start site region 132664
Tssr132665 15 89373934 to 89373961 27 + TSS region transcription start site region 132665
Tssr135872 15 89374008 to 89374030 22 - TSS region transcription start site region 135872
Tssr135873 15 89374039 to 89374074 35 - TSS region transcription start site region 135873
Tssr135874 15 89374083 to 89374145 62 - TSS region transcription start site region 135874
Tssr132666 15 89376342 to 89376364 22 + TSS region transcription start site region 132666
Tssr135875 15 89377058 to 89377102 44 - TSS region transcription start site region 135875
Tssr135876 15 89377103 to 89377114 11 - TSS region transcription start site region 135876
Cpgi7542 15 89377220 to 89377825 605 CpG island CpG island 7542
Odf3b 15 89377449 to 89379282 1833 - protein coding gene outer dense fiber of sperm tails 3B
Tssr132667 15 89377718 to 89377726 8 + TSS region transcription start site region 132667
Cpgi7543 15 89378154 to 89379382 1228 CpG island CpG island 7543
Tssr135877 15 89378932 to 89378943 11 - TSS region transcription start site region 135877
Tssr135878 15 89378949 to 89378962 13 - TSS region transcription start site region 135878
Tssr135879 15 89378971 to 89378994 23 - TSS region transcription start site region 135879
Tssr135880 15 89378996 to 89379028 32 - TSS region transcription start site region 135880
Tssr135881 15 89379164 to 89379175 11 - TSS region transcription start site region 135881
Tssr135882 15 89379246 to 89379262 16 - TSS region transcription start site region 135882
Tssr135883 15 89379264 to 89379300 36 - TSS region transcription start site region 135883
Tssr135884 15 89379588 to 89379618 30 - TSS region transcription start site region 135884
Tssr4689 15 89384860 to 89384867 7 + TSS region transcription start site region 4689
Tssr132668 15 89384875 to 89384884 9 + TSS region transcription start site region 132668
Tssr132669 15 89384888 to 89384899 11 + TSS region transcription start site region 132669
Tssr132670 15 89384902 to 89384910 8 + TSS region transcription start site region 132670
Klhdc7b 15 89386891 to 89388708 1817 + protein coding gene kelch domain containing 7B
Cpgi7544 15 89388164 to 89388576 412 CpG island CpG island 7544
Syce3 15 89390174 to 89410503 20329 - protein coding gene synaptonemal complex central element protein 3
Cpgi7545 15 89409955 to 89410382 427 CpG island CpG island 7545
Tssr135885 15 89410230 to 89410271 41 - TSS region transcription start site region 135885
Cpt1b 15 89416405 to 89425862 9457 - protein coding gene carnitine palmitoyltransferase 1b, muscle
Gm44502 15 89416405 to 89429696 13291 - lncRNA gene predicted readthrough transcript (NMD candidate), 44502
Tssr135886 15 89416659 to 89416663 4 - TSS region transcription start site region 135886
Tssr135887 15 89424765 to 89424780 15 - TSS region transcription start site region 135887
Tssr132671 15 89425289 to 89425294 5 + TSS region transcription start site region 132671
Tssr135888 15 89425309 to 89425314 5 - TSS region transcription start site region 135888
Tssr135889 15 89425326 to 89425357 31 - TSS region transcription start site region 135889
Cpgi7546 15 89425501 to 89425704 203 CpG island CpG island 7546
Tssr135890 15 89425534 to 89425551 17 - TSS region transcription start site region 135890
Tssr135891 15 89425600 to 89425631 31 - TSS region transcription start site region 135891
Tssr135892 15 89425818 to 89425851 33 - TSS region transcription start site region 135892
Tssr135893 15 89425856 to 89425872 16 - TSS region transcription start site region 135893
Tssr135894 15 89426236 to 89426260 24 - TSS region transcription start site region 135894
Chkb 15 89426360 to 89429908 3548 - protein coding gene choline kinase beta
Cpgi7547 15 89428766 to 89430243 1477 CpG island CpG island 7547
Tssr135895 15 89429214 to 89429223 9 - TSS region transcription start site region 135895
Tssr135896 15 89429333 to 89429351 18 - TSS region transcription start site region 135896
Tssr135897 15 89429397 to 89429441 44 - TSS region transcription start site region 135897
Tssr132672 15 89429560 to 89429579 19 + TSS region transcription start site region 132672
C730034F03Rik 15 89429589 to 89430868 1279 + unclassified gene RIKEN cDNA C730034F03 gene
Tssr135898 15 89429632 to 89429680 48 - TSS region transcription start site region 135898
Tssr135899 15 89429802 to 89429820 18 - TSS region transcription start site region 135899
Tssr135900 15 89429821 to 89429832 11 - TSS region transcription start site region 135900
Tssr135901 15 89429851 to 89429935 84 - TSS region transcription start site region 135901
Tssr132673 15 89430059 to 89430064 5 + TSS region transcription start site region 132673
D15Mit190 15 89430866 to 89430990 124 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 190
Cpgi7548 15 89453463 to 89454584 1121 CpG island CpG island 7548
Tssr132674 15 89453698 to 89453761 63 + TSS region transcription start site region 132674
Tssr132675 15 89453790 to 89453835 45 + TSS region transcription start site region 132675
Mapk8ip2 15 89453911 to 89462447 8536 + protein coding gene mitogen-activated protein kinase 8 interacting protein 2
Tssr132676 15 89453913 to 89453934 21 + TSS region transcription start site region 132676
Tssr132677 15 89454019 to 89454095 76 + TSS region transcription start site region 132677
Tssr132678 15 89454107 to 89454114 7 + TSS region transcription start site region 132678
Tssr132679 15 89454124 to 89454145 21 + TSS region transcription start site region 132679
Tssr132680 15 89454168 to 89454217 49 + TSS region transcription start site region 132680
Tssr135902 15 89456677 to 89456689 12 - TSS region transcription start site region 135902
Tssr132681 15 89456733 to 89456738 5 + TSS region transcription start site region 132681
Cpgi7549 15 89457243 to 89458313 1070 CpG island CpG island 7549
Cpgi7550 15 89458891 to 89459275 384 CpG island CpG island 7550
Arsa 15 89472476 to 89477424 4948 - protein coding gene arylsulfatase A
Cpgi7551 15 89475947 to 89476555 608 CpG island CpG island 7551
Tssr135903 15 89476092 to 89476138 46 - TSS region transcription start site region 135903
Tssr135904 15 89476140 to 89476184 44 - TSS region transcription start site region 135904
C230037L18Rik 15 89476252 to 89484850 8598 + antisense lncRNA gene RIKEN cDNA C230037L18 gene
Tssr135905 15 89476317 to 89476328 11 - TSS region transcription start site region 135905
Tssr135906 15 89476342 to 89476370 28 - TSS region transcription start site region 135906
Tssr135907 15 89476386 to 89476391 5 - TSS region transcription start site region 135907
Tssr135908 15 89476404 to 89476407 3 - TSS region transcription start site region 135908
Tssr135909 15 89476485 to 89476525 40 - TSS region transcription start site region 135909
Tssr135910 15 89477058 to 89477085 27 - TSS region transcription start site region 135910
Tssr135911 15 89477400 to 89477420 20 - TSS region transcription start site region 135911
Tssr135912 15 89477439 to 89477450 11 - TSS region transcription start site region 135912
Gm41381 15 89497719 to 89499469 1750 + lncRNA gene predicted gene, 41381
Tssr132682 15 89497919 to 89497934 15 + TSS region transcription start site region 132682
Tssr132683 15 89497959 to 89497968 9 + TSS region transcription start site region 132683
Tssr132684 15 89497983 to 89497994 11 + TSS region transcription start site region 132684
Tssr132685 15 89498002 to 89498012 10 + TSS region transcription start site region 132685
Tssr132686 15 89498013 to 89498046 33 + TSS region transcription start site region 132686
Tssr132687 15 89498048 to 89498069 21 + TSS region transcription start site region 132687
Cpgi7552 15 89498463 to 89500828 2365 CpG island CpG island 7552
Tssr132688 15 89499598 to 89499653 55 + TSS region transcription start site region 132688
Shank3 15 89499705 to 89560261 60556 + protein coding gene SH3 and multiple ankyrin repeat domains 3
Tssr132689 15 89499918 to 89499922 4 + TSS region transcription start site region 132689
Tssr132690 15 89500069 to 89500108 39 + TSS region transcription start site region 132690
Tssr132691 15 89500116 to 89500145 29 + TSS region transcription start site region 132691
Gm15609 15 89520096 to 89523677 3581 - lincRNA gene predicted gene 15609
Cpgi7553 15 89523269 to 89524854 1585 CpG island CpG island 7553
Tssr135913 15 89523634 to 89523645 11 - TSS region transcription start site region 135913
Tssr135914 15 89523690 to 89523710 20 - TSS region transcription start site region 135914
Tssr132692 15 89523707 to 89523743 36 + TSS region transcription start site region 132692
Tssr132693 15 89523752 to 89523793 41 + TSS region transcription start site region 132693
Cpgi7554 15 89532730 to 89532973 243 CpG island CpG island 7554
Tssr132694 15 89532816 to 89532870 54 + TSS region transcription start site region 132694
Tssr4690 15 89542585 to 89542588 3 + TSS region transcription start site region 4690
Cpgi7555 15 89547406 to 89548897 1491 CpG island CpG island 7555
Tssr132695 15 89548474 to 89548498 24 + TSS region transcription start site region 132695
Tssr132696 15 89553310 to 89553314 4 + TSS region transcription start site region 132696
Cpgi7556 15 89557639 to 89558497 858 CpG island CpG island 7556
Gm36221 15 89567167 to 89568205 1038 - lncRNA gene predicted gene, 36221
Tssr135915 15 89568233 to 89568238 5 - TSS region transcription start site region 135915
Tssr135916 15 89568242 to 89568257 15 - TSS region transcription start site region 135916
Tssr135917 15 89568264 to 89568274 10 - TSS region transcription start site region 135917
Tssr132697 15 89568322 to 89568325 3 + TSS region transcription start site region 132697
Acr 15 89568326 to 89574585 6259 + protein coding gene acrosin prepropeptide
Tssr132698 15 89568327 to 89568383 56 + TSS region transcription start site region 132698
Tssr132699 15 89573905 to 89573915 10 + TSS region transcription start site region 132699
Cpgi7557 15 89574002 to 89574156 154 CpG island CpG island 7557
Tssr132700 15 89574187 to 89574202 15 + TSS region transcription start site region 132700
Rabl2 15 89582533 to 89591923 9390 - protein coding gene RAB, member RAS oncogene family-like 2
Cpgi7558 15 89591262 to 89592103 841 CpG island CpG island 7558
Tssr135918 15 89591855 to 89591916 61 - TSS region transcription start site region 135918
D15Jmp13 15 89644099 to 89644344 245 DNA segment DNA segment, Chr 15, Jackson Laboratory Mapping Panels 13