Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:89178236-89425311

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103 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plxnb2 15 89155549 to 89180788 25239 - protein coding gene plexin B2
Cpgi7534 15 89180079 to 89181446 1367 CpG island CpG island 7534
Tssr135850 15 89180681 to 89180701 20 - TSS region transcription start site region 135850
Tssr135851 15 89180703 to 89180765 62 - TSS region transcription start site region 135851
Tssr135852 15 89180816 to 89180821 5 - TSS region transcription start site region 135852
Tssr132644 15 89180921 to 89180943 22 + TSS region transcription start site region 132644
Tssr135853 15 89180963 to 89181032 69 - TSS region transcription start site region 135853
Tssr135854 15 89181118 to 89181146 28 - TSS region transcription start site region 135854
Dennd6b 15 89182213 to 89196474 14261 - protein coding gene DENN/MADD domain containing 6B
Mir6958 15 89185465 to 89185537 72 - miRNA gene microRNA 6958
Tssr135855 15 89187403 to 89187412 9 - TSS region transcription start site region 135855
Tssr135856 15 89187419 to 89187432 13 - TSS region transcription start site region 135856
Tssr135857 15 89187437 to 89187446 9 - TSS region transcription start site region 135857
Tssr135858 15 89190515 to 89190563 48 - TSS region transcription start site region 135858
Cpgi7535 15 89195888 to 89196830 942 CpG island CpG island 7535
Tssr132645 15 89196137 to 89196164 27 + TSS region transcription start site region 132645
5730424H11Rik 15 89196148 to 89198429 2281 unclassified gene RIKEN cDNA 5730424H11 gene
Tssr132646 15 89196180 to 89196187 7 + TSS region transcription start site region 132646
Tssr135859 15 89196414 to 89196430 16 - TSS region transcription start site region 135859
Tssr135860 15 89196443 to 89196454 11 - TSS region transcription start site region 135860
Tssr135861 15 89196457 to 89196478 21 - TSS region transcription start site region 135861
Cpgi7536 15 89211242 to 89212389 1147 CpG island CpG island 7536
Tssr132647 15 89211522 to 89211606 84 + TSS region transcription start site region 132647
Ppp6r2 15 89211553 to 89287010 75457 + protein coding gene protein phosphatase 6, regulatory subunit 2
Gm26798 15 89211559 to 89215012 3453 - lincRNA gene predicted gene, 26798
Tssr132648 15 89211607 to 89211620 13 + TSS region transcription start site region 132648
Tssr132649 15 89212309 to 89212311 2 + TSS region transcription start site region 132649
D15Jmp10 15 89241691 to 89241847 156 DNA segment DNA segment, Chr 15, Jackson Laboratory Mapping Panels 10
Tssr132650 15 89243315 to 89243330 15 + TSS region transcription start site region 132650
Tssr132651 15 89243331 to 89243366 35 + TSS region transcription start site region 132651
Tssr132652 15 89286550 to 89286551 1 + TSS region transcription start site region 132652
Tssr132653 15 89286953 to 89286957 4 + TSS region transcription start site region 132653
Sbf1 15 89288236 to 89315311 27075 - protein coding gene SET binding factor 1
Mir6959 15 89305658 to 89305732 74 - miRNA gene microRNA 6959
Tssr135862 15 89309970 to 89310002 32 - TSS region transcription start site region 135862
Cpgi7537 15 89314456 to 89315711 1255 CpG island CpG island 7537
Tssr135863 15 89315253 to 89315312 59 - TSS region transcription start site region 135863
Adm2 15 89322720 to 89324731 2011 + protein coding gene adrenomedullin 2
Cpgi7538 15 89322814 to 89323118 304 CpG island CpG island 7538
Tssr132654 15 89322929 to 89322960 31 + TSS region transcription start site region 132654
Tssr132655 15 89322969 to 89322986 17 + TSS region transcription start site region 132655
Tssr132656 15 89334453 to 89334472 19 + TSS region transcription start site region 132656
Miox 15 89334473 to 89337007 2534 + protein coding gene myo-inositol oxygenase
Tssr132657 15 89334970 to 89334979 9 + TSS region transcription start site region 132657
Tssr132658 15 89334986 to 89335017 31 + TSS region transcription start site region 132658
Cpgi7539 15 89335588 to 89335785 197 CpG island CpG island 7539
Tssr132659 15 89336016 to 89336025 9 + TSS region transcription start site region 132659
Tssr4688 15 89336853 to 89336862 9 + TSS region transcription start site region 4688
Tssr135864 15 89336886 to 89336896 10 - TSS region transcription start site region 135864
D15Jmp11 15 89349297 to 89349493 196 DNA segment DNA segment, Chr 15, Jackson Laboratory Mapping Panels 11
Lmf2 15 89351004 to 89355659 4655 - protein coding gene lipase maturation factor 2
Cpgi7540 15 89355203 to 89356050 847 CpG island CpG island 7540
Tssr135865 15 89355468 to 89355498 30 - TSS region transcription start site region 135865
Tssr135866 15 89355529 to 89355632 103 - TSS region transcription start site region 135866
Tssr135867 15 89355655 to 89355668 13 - TSS region transcription start site region 135867
Tssr132660 15 89355716 to 89355727 11 + TSS region transcription start site region 132660
Ncaph2 15 89355719 to 89372826 17107 + protein coding gene non-SMC condensin II complex, subunit H2
Tssr132661 15 89355730 to 89355741 11 + TSS region transcription start site region 132661
Tssr132662 15 89355755 to 89355782 27 + TSS region transcription start site region 132662
Tssr135868 15 89356451 to 89356458 7 - TSS region transcription start site region 135868
Tssr132663 15 89370526 to 89370543 17 + TSS region transcription start site region 132663
Sco2 15 89371637 to 89373818 2181 - protein coding gene SCO2 cytochrome c oxidase assembly protein
Tymp 15 89371931 to 89377036 5105 - protein coding gene thymidine phosphorylase
Cpgi7541 15 89373331 to 89374434 1103 CpG island CpG island 7541
4930423K06Rik 15 89373625 to 89375717 2092 unclassified non-coding RNA gene RIKEN cDNA 4930423K06 gene
Tssr135869 15 89373810 to 89373829 19 - TSS region transcription start site region 135869
Tssr135870 15 89373831 to 89373860 29 - TSS region transcription start site region 135870
Tssr135871 15 89373865 to 89373901 36 - TSS region transcription start site region 135871
Tssr132664 15 89373903 to 89373928 25 + TSS region transcription start site region 132664
Tssr132665 15 89373934 to 89373961 27 + TSS region transcription start site region 132665
Tssr135872 15 89374008 to 89374030 22 - TSS region transcription start site region 135872
Tssr135873 15 89374039 to 89374074 35 - TSS region transcription start site region 135873
Tssr135874 15 89374083 to 89374145 62 - TSS region transcription start site region 135874
Tssr132666 15 89376342 to 89376364 22 + TSS region transcription start site region 132666
Tssr135875 15 89377058 to 89377102 44 - TSS region transcription start site region 135875
Tssr135876 15 89377103 to 89377114 11 - TSS region transcription start site region 135876
Cpgi7542 15 89377220 to 89377825 605 CpG island CpG island 7542
Odf3b 15 89377449 to 89379282 1833 - protein coding gene outer dense fiber of sperm tails 3B
Tssr132667 15 89377718 to 89377726 8 + TSS region transcription start site region 132667
Cpgi7543 15 89378154 to 89379382 1228 CpG island CpG island 7543
Tssr135877 15 89378932 to 89378943 11 - TSS region transcription start site region 135877
Tssr135878 15 89378949 to 89378962 13 - TSS region transcription start site region 135878
Tssr135879 15 89378971 to 89378994 23 - TSS region transcription start site region 135879
Tssr135880 15 89378996 to 89379028 32 - TSS region transcription start site region 135880
Tssr135881 15 89379164 to 89379175 11 - TSS region transcription start site region 135881
Tssr135882 15 89379246 to 89379262 16 - TSS region transcription start site region 135882
Tssr135883 15 89379264 to 89379300 36 - TSS region transcription start site region 135883
Tssr135884 15 89379588 to 89379618 30 - TSS region transcription start site region 135884
Tssr4689 15 89384860 to 89384867 7 + TSS region transcription start site region 4689
Tssr132668 15 89384875 to 89384884 9 + TSS region transcription start site region 132668
Tssr132669 15 89384888 to 89384899 11 + TSS region transcription start site region 132669
Tssr132670 15 89384902 to 89384910 8 + TSS region transcription start site region 132670
Klhdc7b 15 89386891 to 89388708 1817 + protein coding gene kelch domain containing 7B
Cpgi7544 15 89388164 to 89388576 412 CpG island CpG island 7544
Syce3 15 89390174 to 89410503 20329 - protein coding gene synaptonemal complex central element protein 3
Cpgi7545 15 89409955 to 89410382 427 CpG island CpG island 7545
Tssr135885 15 89410230 to 89410271 41 - TSS region transcription start site region 135885
Gm44502 15 89416405 to 89429696 13291 - lncRNA gene predicted readthrough transcript (NMD candidate), 44502
Cpt1b 15 89416405 to 89425862 9457 - protein coding gene carnitine palmitoyltransferase 1b, muscle
Tssr135886 15 89416659 to 89416663 4 - TSS region transcription start site region 135886
Tssr135887 15 89424765 to 89424780 15 - TSS region transcription start site region 135887
Tssr132671 15 89425289 to 89425294 5 + TSS region transcription start site region 132671
Tssr135888 15 89425309 to 89425314 5 - TSS region transcription start site region 135888