Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:89060197-89261095

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi7522 15 89059215 to 89060827 1612 CpG island CpG island 7522
Panx2 15 89059734 to 89073567 13833 + protein coding gene pannexin 2
Cpgi7523 15 89067496 to 89068808 1312 CpG island CpG island 7523
Cpgi7524 15 89070542 to 89070863 321 CpG island CpG island 7524
1810021B22Rik 15 89071198 to 89075854 4656 - antisense lncRNA gene RIKEN cDNA 1810021B22 gene
Tssr135835 15 89074123 to 89074145 22 - TSS region transcription start site region 135835
Cpgi7525 15 89075341 to 89076735 1394 CpG island CpG island 7525
Tssr135836 15 89075893 to 89075951 58 - TSS region transcription start site region 135836
Tssr132637 15 89075996 to 89076038 42 + TSS region transcription start site region 132637
Trabd 15 89076052 to 89087075 11023 + protein coding gene TraB domain containing
Tssr132638 15 89076058 to 89076105 47 + TSS region transcription start site region 132638
Tssr132639 15 89076128 to 89076147 19 + TSS region transcription start site region 132639
9030419F21Rik 15 89079187 to 89080560 1373 unclassified gene RIKEN cDNA 9030419F21 gene
Tssr132640 15 89079332 to 89079336 4 + TSS region transcription start site region 132640
Cpgi7526 15 89088750 to 89090043 1293 CpG island CpG island 7526
Tssr132641 15 89089073 to 89089111 38 + TSS region transcription start site region 132641
Selenoo 15 89089107 to 89100340 11233 + protein coding gene selenoprotein O
Tubgcp6 15 89099097 to 89123208 24111 - protein coding gene tubulin, gamma complex associated protein 6
Tssr132642 15 89099254 to 89099266 12 + TSS region transcription start site region 132642
Tssr135837 15 89106167 to 89106178 11 - TSS region transcription start site region 135837
Cpgi7527 15 89122496 to 89123747 1251 CpG island CpG island 7527
Tssr135838 15 89123111 to 89123173 62 - TSS region transcription start site region 135838
Hdac10 15 89123307 to 89128700 5393 - protein coding gene histone deacetylase 10
Cpgi7528 15 89128236 to 89129003 767 CpG island CpG island 7528
Tssr135839 15 89128634 to 89128693 59 - TSS region transcription start site region 135839
Gm46530 15 89128727 to 89133139 4412 + lncRNA gene predicted gene, 46530
Mapk12 15 89130584 to 89140703 10119 - protein coding gene mitogen-activated protein kinase 12
Tssr135840 15 89137582 to 89137600 18 - TSS region transcription start site region 135840
Cpgi7529 15 89139989 to 89140911 922 CpG island CpG island 7529
Tssr135841 15 89140664 to 89140696 32 - TSS region transcription start site region 135841
Mapk11 15 89142482 to 89149606 7124 - protein coding gene mitogen-activated protein kinase 11
D15Jmp9 15 89143520 to 89143653 133 DNA segment DNA segment, Chr 15, Jackson Laboratory Mapping Panels 9
Cpgi7530 15 89145988 to 89147249 1261 CpG island CpG island 7530
Tssr135842 15 89147028 to 89147064 36 - TSS region transcription start site region 135842
Tssr135843 15 89147149 to 89147195 46 - TSS region transcription start site region 135843
Cpgi7531 15 89149099 to 89150054 955 CpG island CpG island 7531
Tssr135844 15 89149557 to 89149650 93 - TSS region transcription start site region 135844
Plxnb2 15 89155549 to 89180788 25239 - protein coding gene plexin B2
Cpgi7532 15 89160197 to 89161095 898 CpG island CpG island 7532
Mir7118 15 89162848 to 89162908 60 - miRNA gene microRNA 7118
Tssr135845 15 89167402 to 89167446 44 - TSS region transcription start site region 135845
Tssr135846 15 89169562 to 89169573 11 - TSS region transcription start site region 135846
Tssr135847 15 89169604 to 89169627 23 - TSS region transcription start site region 135847
Tssr132643 15 89169782 to 89169793 11 + TSS region transcription start site region 132643
Cpgi7533 15 89173008 to 89174316 1308 CpG island CpG island 7533
Tssr135848 15 89173931 to 89173977 46 - TSS region transcription start site region 135848
Tssr135849 15 89178063 to 89178074 11 - TSS region transcription start site region 135849
Cpgi7534 15 89180079 to 89181446 1367 CpG island CpG island 7534
Tssr135850 15 89180681 to 89180701 20 - TSS region transcription start site region 135850
Tssr135851 15 89180703 to 89180765 62 - TSS region transcription start site region 135851
Tssr135852 15 89180816 to 89180821 5 - TSS region transcription start site region 135852
Tssr132644 15 89180921 to 89180943 22 + TSS region transcription start site region 132644
Tssr135853 15 89180963 to 89181032 69 - TSS region transcription start site region 135853
Tssr135854 15 89181118 to 89181146 28 - TSS region transcription start site region 135854
Dennd6b 15 89182213 to 89196474 14261 - protein coding gene DENN/MADD domain containing 6B
Mir6958 15 89185465 to 89185537 72 - miRNA gene microRNA 6958
Tssr135855 15 89187403 to 89187412 9 - TSS region transcription start site region 135855
Tssr135856 15 89187419 to 89187432 13 - TSS region transcription start site region 135856
Tssr135857 15 89187437 to 89187446 9 - TSS region transcription start site region 135857
Tssr135858 15 89190515 to 89190563 48 - TSS region transcription start site region 135858
Cpgi7535 15 89195888 to 89196830 942 CpG island CpG island 7535
Tssr132645 15 89196137 to 89196164 27 + TSS region transcription start site region 132645
5730424H11Rik 15 89196148 to 89198429 2281 unclassified gene RIKEN cDNA 5730424H11 gene
Tssr132646 15 89196180 to 89196187 7 + TSS region transcription start site region 132646
Tssr135859 15 89196414 to 89196430 16 - TSS region transcription start site region 135859
Tssr135860 15 89196443 to 89196454 11 - TSS region transcription start site region 135860
Tssr135861 15 89196457 to 89196478 21 - TSS region transcription start site region 135861
Cpgi7536 15 89211242 to 89212389 1147 CpG island CpG island 7536
Tssr132647 15 89211522 to 89211606 84 + TSS region transcription start site region 132647
Ppp6r2 15 89211553 to 89287010 75457 + protein coding gene protein phosphatase 6, regulatory subunit 2
Gm26798 15 89211559 to 89215012 3453 - lincRNA gene predicted gene, 26798
Tssr132648 15 89211607 to 89211620 13 + TSS region transcription start site region 132648
Tssr132649 15 89212309 to 89212311 2 + TSS region transcription start site region 132649
D15Jmp10 15 89241691 to 89241847 156 DNA segment DNA segment, Chr 15, Jackson Laboratory Mapping Panels 10
Tssr132650 15 89243315 to 89243330 15 + TSS region transcription start site region 132650
Tssr132651 15 89243331 to 89243366 35 + TSS region transcription start site region 132651