Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:88889221-89149379

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm38643 15 88885459 to 88904036 18577 + lncRNA gene predicted gene, 38643
Gm20621 15 88889780 to 88891525 1745 - sense overlapping lncRNA gene predicted gene 20621
Cpgi7519 15 88890527 to 88891515 988 CpG island CpG island 7519
Ttll8 15 88890633 to 88954418 63785 - protein coding gene tubulin tyrosine ligase-like family, member 8
Tssr4687 15 88891227 to 88891240 13 + TSS region transcription start site region 4687
Tssr135819 15 88891455 to 88891478 23 - TSS region transcription start site region 135819
Tssr135820 15 88891481 to 88891518 37 - TSS region transcription start site region 135820
Tssr135821 15 88891520 to 88891530 10 - TSS region transcription start site region 135821
Tssr135822 15 88900631 to 88900634 3 - TSS region transcription start site region 135822
D15Mit73 15 88910432 to 88910661 229 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 73
Cpgi7520 15 88954300 to 88955217 917 CpG island CpG island 7520
Tssr135823 15 88954390 to 88954397 7 - TSS region transcription start site region 135823
Tssr135824 15 88954400 to 88954446 46 - TSS region transcription start site region 135824
Tssr135825 15 88954560 to 88954570 10 - TSS region transcription start site region 135825
Mlc1 15 88955884 to 88979007 23123 - protein coding gene megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)
Tssr135826 15 88977844 to 88977859 15 - TSS region transcription start site region 135826
Tssr135827 15 88977923 to 88977949 26 - TSS region transcription start site region 135827
Tssr135828 15 88978542 to 88978564 22 - TSS region transcription start site region 135828
Tssr135829 15 88978567 to 88978597 30 - TSS region transcription start site region 135829
Tssr135830 15 88978773 to 88978809 36 - TSS region transcription start site region 135830
Tssr135831 15 88978958 to 88978992 34 - TSS region transcription start site region 135831
Gm8702 15 88980021 to 88980414 393 - pseudogene predicted gene 8702
Tssr135832 15 88980424 to 88980441 17 - TSS region transcription start site region 135832
Cpgi7521 15 88982612 to 88983177 565 CpG island CpG island 7521
Tssr135833 15 88982667 to 88982706 39 - TSS region transcription start site region 135833
Tssr135834 15 88982768 to 88982775 7 - TSS region transcription start site region 135834
Tssr132627 15 88982894 to 88982962 68 + TSS region transcription start site region 132627
Mov10l1 15 88982909 to 89055152 72243 + protein coding gene Moloney leukemia virus 10-like 1
Tssr132628 15 89019219 to 89019228 9 + TSS region transcription start site region 132628
Gm23737 15 89019221 to 89019379 158 + snRNA gene predicted gene, 23737
Tssr132629 15 89020301 to 89020319 18 + TSS region transcription start site region 132629
Tssr132630 15 89020328 to 89020339 11 + TSS region transcription start site region 132630
Tssr132631 15 89020340 to 89020355 15 + TSS region transcription start site region 132631
Tssr132632 15 89020397 to 89020420 23 + TSS region transcription start site region 132632
Cpgi7522 15 89059215 to 89060827 1612 CpG island CpG island 7522
Tssr132633 15 89059712 to 89059760 48 + TSS region transcription start site region 132633
Panx2 15 89059734 to 89073567 13833 + protein coding gene pannexin 2
Tssr132634 15 89059761 to 89059782 21 + TSS region transcription start site region 132634
Tssr132635 15 89059785 to 89059804 19 + TSS region transcription start site region 132635
Tssr132636 15 89060068 to 89060100 32 + TSS region transcription start site region 132636
Cpgi7523 15 89067496 to 89068808 1312 CpG island CpG island 7523
Cpgi7524 15 89070542 to 89070863 321 CpG island CpG island 7524
1810021B22Rik 15 89071198 to 89075854 4656 - antisense lncRNA gene RIKEN cDNA 1810021B22 gene
Tssr135835 15 89074123 to 89074145 22 - TSS region transcription start site region 135835
Cpgi7525 15 89075341 to 89076735 1394 CpG island CpG island 7525
Tssr135836 15 89075893 to 89075951 58 - TSS region transcription start site region 135836
Tssr132637 15 89075996 to 89076038 42 + TSS region transcription start site region 132637
Trabd 15 89076052 to 89087075 11023 + protein coding gene TraB domain containing
Tssr132638 15 89076058 to 89076105 47 + TSS region transcription start site region 132638
Tssr132639 15 89076128 to 89076147 19 + TSS region transcription start site region 132639
9030419F21Rik 15 89079187 to 89080560 1373 unclassified gene RIKEN cDNA 9030419F21 gene
Tssr132640 15 89079332 to 89079336 4 + TSS region transcription start site region 132640
Cpgi7526 15 89088750 to 89090043 1293 CpG island CpG island 7526
Tssr132641 15 89089073 to 89089111 38 + TSS region transcription start site region 132641
Selenoo 15 89089107 to 89100340 11233 + protein coding gene selenoprotein O
Tubgcp6 15 89099097 to 89123208 24111 - protein coding gene tubulin, gamma complex associated protein 6
Tssr132642 15 89099254 to 89099266 12 + TSS region transcription start site region 132642
Tssr135837 15 89106167 to 89106178 11 - TSS region transcription start site region 135837
Cpgi7527 15 89122496 to 89123747 1251 CpG island CpG island 7527
Tssr135838 15 89123111 to 89123173 62 - TSS region transcription start site region 135838
Hdac10 15 89123307 to 89128700 5393 - protein coding gene histone deacetylase 10
Cpgi7528 15 89128236 to 89129003 767 CpG island CpG island 7528
Tssr135839 15 89128634 to 89128693 59 - TSS region transcription start site region 135839
Gm46530 15 89128727 to 89133139 4412 + lncRNA gene predicted gene, 46530
Mapk12 15 89130584 to 89140703 10119 - protein coding gene mitogen-activated protein kinase 12
Tssr135840 15 89137582 to 89137600 18 - TSS region transcription start site region 135840
Cpgi7529 15 89139989 to 89140911 922 CpG island CpG island 7529
Tssr135841 15 89140664 to 89140696 32 - TSS region transcription start site region 135841
Mapk11 15 89142482 to 89149606 7124 - protein coding gene mitogen-activated protein kinase 11
D15Jmp9 15 89143520 to 89143653 133 DNA segment DNA segment, Chr 15, Jackson Laboratory Mapping Panels 9
Cpgi7530 15 89145988 to 89147249 1261 CpG island CpG island 7530
Tssr135842 15 89147028 to 89147064 36 - TSS region transcription start site region 135842
Tssr135843 15 89147149 to 89147195 46 - TSS region transcription start site region 135843
Cpgi7531 15 89149099 to 89150054 955 CpG island CpG island 7531