Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:88849012-91599769

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391 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pain1 15 75448997 to 90928982 15479985 QTL pain 1
Alprf 15 87465070 to 90390365 2925295 QTL alcohol preference
Lfibq10 15 87957884 to 90043083 2085199 QTL liver fibrosis QTL 10
Gm33049 15 88854441 to 88862506 8065 + protein coding gene predicted gene, 33049
Tssr132618 15 88854701 to 88854715 14 + TSS region transcription start site region 132618
Tssr132619 15 88858588 to 88858597 9 + TSS region transcription start site region 132619
Tssr132620 15 88858618 to 88858632 14 + TSS region transcription start site region 132620
Cpgi7516 15 88861336 to 88864383 3047 CpG island CpG island 7516
Tssr135817 15 88861993 to 88862008 15 - TSS region transcription start site region 135817
Tssr135818 15 88862014 to 88862028 14 - TSS region transcription start site region 135818
Tssr132621 15 88862178 to 88862193 15 + TSS region transcription start site region 132621
Pim3 15 88862194 to 88865726 3532 + protein coding gene proviral integration site 3
Tssr132622 15 88862240 to 88862245 5 + TSS region transcription start site region 132622
Tssr132623 15 88862467 to 88862484 17 + TSS region transcription start site region 132623
Tssr132624 15 88864103 to 88864114 11 + TSS region transcription start site region 132624
Tssr132625 15 88864200 to 88864208 8 + TSS region transcription start site region 132625
D15Mit124 15 88874937 to 88875070 133 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 124
Cpgi7517 15 88876366 to 88876698 332 CpG island CpG island 7517
Tssr132626 15 88876933 to 88876935 2 + TSS region transcription start site region 132626
Cpgi7518 15 88881892 to 88882111 219 CpG island CpG island 7518
Gm38643 15 88885459 to 88904036 18577 + lncRNA gene predicted gene, 38643
Gm20621 15 88889780 to 88891525 1745 - sense overlapping lncRNA gene predicted gene 20621
Cpgi7519 15 88890527 to 88891515 988 CpG island CpG island 7519
Ttll8 15 88890633 to 88954418 63785 - protein coding gene tubulin tyrosine ligase-like family, member 8
Tssr4687 15 88891227 to 88891240 13 + TSS region transcription start site region 4687
Tssr135819 15 88891455 to 88891478 23 - TSS region transcription start site region 135819
Tssr135820 15 88891481 to 88891518 37 - TSS region transcription start site region 135820
Tssr135821 15 88891520 to 88891530 10 - TSS region transcription start site region 135821
Tssr135822 15 88900631 to 88900634 3 - TSS region transcription start site region 135822
D15Mit73 15 88910432 to 88910661 229 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 73
Cpgi7520 15 88954300 to 88955217 917 CpG island CpG island 7520
Tssr135823 15 88954390 to 88954397 7 - TSS region transcription start site region 135823
Tssr135824 15 88954400 to 88954446 46 - TSS region transcription start site region 135824
Tssr135825 15 88954560 to 88954570 10 - TSS region transcription start site region 135825
Mlc1 15 88955884 to 88979007 23123 - protein coding gene megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)
Tssr135826 15 88977844 to 88977859 15 - TSS region transcription start site region 135826
Tssr135827 15 88977923 to 88977949 26 - TSS region transcription start site region 135827
Tssr135828 15 88978542 to 88978564 22 - TSS region transcription start site region 135828
Tssr135829 15 88978567 to 88978597 30 - TSS region transcription start site region 135829
Tssr135830 15 88978773 to 88978809 36 - TSS region transcription start site region 135830
Tssr135831 15 88978958 to 88978992 34 - TSS region transcription start site region 135831
Gm8702 15 88980021 to 88980414 393 - pseudogene predicted gene 8702
Tssr135832 15 88980424 to 88980441 17 - TSS region transcription start site region 135832
Cpgi7521 15 88982612 to 88983177 565 CpG island CpG island 7521
Tssr135833 15 88982667 to 88982706 39 - TSS region transcription start site region 135833
Tssr135834 15 88982768 to 88982775 7 - TSS region transcription start site region 135834
Tssr132627 15 88982894 to 88982962 68 + TSS region transcription start site region 132627
Mov10l1 15 88982909 to 89055152 72243 + protein coding gene Moloney leukemia virus 10-like 1
Tssr132628 15 89019219 to 89019228 9 + TSS region transcription start site region 132628
Gm23737 15 89019221 to 89019379 158 + snRNA gene predicted gene, 23737
Tssr132629 15 89020301 to 89020319 18 + TSS region transcription start site region 132629
Tssr132630 15 89020328 to 89020339 11 + TSS region transcription start site region 132630
Tssr132631 15 89020340 to 89020355 15 + TSS region transcription start site region 132631
Tssr132632 15 89020397 to 89020420 23 + TSS region transcription start site region 132632
Cpgi7522 15 89059215 to 89060827 1612 CpG island CpG island 7522
Tssr132633 15 89059712 to 89059760 48 + TSS region transcription start site region 132633
Panx2 15 89059734 to 89073567 13833 + protein coding gene pannexin 2
Tssr132634 15 89059761 to 89059782 21 + TSS region transcription start site region 132634
Tssr132635 15 89059785 to 89059804 19 + TSS region transcription start site region 132635
Tssr132636 15 89060068 to 89060100 32 + TSS region transcription start site region 132636
Cpgi7523 15 89067496 to 89068808 1312 CpG island CpG island 7523
Cpgi7524 15 89070542 to 89070863 321 CpG island CpG island 7524
1810021B22Rik 15 89071198 to 89075854 4656 - antisense lncRNA gene RIKEN cDNA 1810021B22 gene
Tssr135835 15 89074123 to 89074145 22 - TSS region transcription start site region 135835
Cpgi7525 15 89075341 to 89076735 1394 CpG island CpG island 7525
Tssr135836 15 89075893 to 89075951 58 - TSS region transcription start site region 135836
Tssr132637 15 89075996 to 89076038 42 + TSS region transcription start site region 132637
Trabd 15 89076052 to 89087075 11023 + protein coding gene TraB domain containing
Tssr132638 15 89076058 to 89076105 47 + TSS region transcription start site region 132638
Tssr132639 15 89076128 to 89076147 19 + TSS region transcription start site region 132639
9030419F21Rik 15 89079187 to 89080560 1373 unclassified gene RIKEN cDNA 9030419F21 gene
Tssr132640 15 89079332 to 89079336 4 + TSS region transcription start site region 132640
Cpgi7526 15 89088750 to 89090043 1293 CpG island CpG island 7526
Tssr132641 15 89089073 to 89089111 38 + TSS region transcription start site region 132641
Selenoo 15 89089107 to 89100340 11233 + protein coding gene selenoprotein O
Tubgcp6 15 89099097 to 89123208 24111 - protein coding gene tubulin, gamma complex associated protein 6
Tssr132642 15 89099254 to 89099266 12 + TSS region transcription start site region 132642
Tssr135837 15 89106167 to 89106178 11 - TSS region transcription start site region 135837
Cpgi7527 15 89122496 to 89123747 1251 CpG island CpG island 7527
Tssr135838 15 89123111 to 89123173 62 - TSS region transcription start site region 135838
Hdac10 15 89123307 to 89128700 5393 - protein coding gene histone deacetylase 10
Cpgi7528 15 89128236 to 89129003 767 CpG island CpG island 7528
Tssr135839 15 89128634 to 89128693 59 - TSS region transcription start site region 135839
Gm46530 15 89128727 to 89133139 4412 + lncRNA gene predicted gene, 46530
Mapk12 15 89130584 to 89140703 10119 - protein coding gene mitogen-activated protein kinase 12
Tssr135840 15 89137582 to 89137600 18 - TSS region transcription start site region 135840
Cpgi7529 15 89139989 to 89140911 922 CpG island CpG island 7529
Tssr135841 15 89140664 to 89140696 32 - TSS region transcription start site region 135841
Mapk11 15 89142482 to 89149606 7124 - protein coding gene mitogen-activated protein kinase 11
D15Jmp9 15 89143520 to 89143653 133 DNA segment DNA segment, Chr 15, Jackson Laboratory Mapping Panels 9
Cpgi7530 15 89145988 to 89147249 1261 CpG island CpG island 7530
Tssr135842 15 89147028 to 89147064 36 - TSS region transcription start site region 135842
Tssr135843 15 89147149 to 89147195 46 - TSS region transcription start site region 135843
Cpgi7531 15 89149099 to 89150054 955 CpG island CpG island 7531
Tssr135844 15 89149557 to 89149650 93 - TSS region transcription start site region 135844
Plxnb2 15 89155549 to 89180788 25239 - protein coding gene plexin B2
Cpgi7532 15 89160197 to 89161095 898 CpG island CpG island 7532
Mir7118 15 89162848 to 89162908 60 - miRNA gene microRNA 7118
Tssr135845 15 89167402 to 89167446 44 - TSS region transcription start site region 135845
Tssr135846 15 89169562 to 89169573 11 - TSS region transcription start site region 135846
Tssr135847 15 89169604 to 89169627 23 - TSS region transcription start site region 135847
Tssr132643 15 89169782 to 89169793 11 + TSS region transcription start site region 132643
Cpgi7533 15 89173008 to 89174316 1308 CpG island CpG island 7533
Tssr135848 15 89173931 to 89173977 46 - TSS region transcription start site region 135848
Tssr135849 15 89178063 to 89178074 11 - TSS region transcription start site region 135849
Cpgi7534 15 89180079 to 89181446 1367 CpG island CpG island 7534
Tssr135850 15 89180681 to 89180701 20 - TSS region transcription start site region 135850
Tssr135851 15 89180703 to 89180765 62 - TSS region transcription start site region 135851
Tssr135852 15 89180816 to 89180821 5 - TSS region transcription start site region 135852
Tssr132644 15 89180921 to 89180943 22 + TSS region transcription start site region 132644
Tssr135853 15 89180963 to 89181032 69 - TSS region transcription start site region 135853
Tssr135854 15 89181118 to 89181146 28 - TSS region transcription start site region 135854
Dennd6b 15 89182213 to 89196474 14261 - protein coding gene DENN/MADD domain containing 6B
Mir6958 15 89185465 to 89185537 72 - miRNA gene microRNA 6958
Tssr135855 15 89187403 to 89187412 9 - TSS region transcription start site region 135855
Tssr135856 15 89187419 to 89187432 13 - TSS region transcription start site region 135856
Tssr135857 15 89187437 to 89187446 9 - TSS region transcription start site region 135857
Tssr135858 15 89190515 to 89190563 48 - TSS region transcription start site region 135858
Cpgi7535 15 89195888 to 89196830 942 CpG island CpG island 7535
Tssr132645 15 89196137 to 89196164 27 + TSS region transcription start site region 132645
5730424H11Rik 15 89196148 to 89198429 2281 unclassified gene RIKEN cDNA 5730424H11 gene
Tssr132646 15 89196180 to 89196187 7 + TSS region transcription start site region 132646
Tssr135859 15 89196414 to 89196430 16 - TSS region transcription start site region 135859
Tssr135860 15 89196443 to 89196454 11 - TSS region transcription start site region 135860
Tssr135861 15 89196457 to 89196478 21 - TSS region transcription start site region 135861
Cpgi7536 15 89211242 to 89212389 1147 CpG island CpG island 7536
Tssr132647 15 89211522 to 89211606 84 + TSS region transcription start site region 132647
Ppp6r2 15 89211553 to 89287010 75457 + protein coding gene protein phosphatase 6, regulatory subunit 2
Gm26798 15 89211559 to 89215012 3453 - lincRNA gene predicted gene, 26798
Tssr132648 15 89211607 to 89211620 13 + TSS region transcription start site region 132648
Tssr132649 15 89212309 to 89212311 2 + TSS region transcription start site region 132649
D15Jmp10 15 89241691 to 89241847 156 DNA segment DNA segment, Chr 15, Jackson Laboratory Mapping Panels 10
Tssr132650 15 89243315 to 89243330 15 + TSS region transcription start site region 132650
Tssr132651 15 89243331 to 89243366 35 + TSS region transcription start site region 132651
Tssr132652 15 89286550 to 89286551 1 + TSS region transcription start site region 132652
Tssr132653 15 89286953 to 89286957 4 + TSS region transcription start site region 132653
Sbf1 15 89288236 to 89315311 27075 - protein coding gene SET binding factor 1
Mir6959 15 89305658 to 89305732 74 - miRNA gene microRNA 6959
Tssr135862 15 89309970 to 89310002 32 - TSS region transcription start site region 135862
Cpgi7537 15 89314456 to 89315711 1255 CpG island CpG island 7537
Tssr135863 15 89315253 to 89315312 59 - TSS region transcription start site region 135863
Adm2 15 89322720 to 89324731 2011 + protein coding gene adrenomedullin 2
Cpgi7538 15 89322814 to 89323118 304 CpG island CpG island 7538
Tssr132654 15 89322929 to 89322960 31 + TSS region transcription start site region 132654
Tssr132655 15 89322969 to 89322986 17 + TSS region transcription start site region 132655
Tssr132656 15 89334453 to 89334472 19 + TSS region transcription start site region 132656
Miox 15 89334473 to 89337007 2534 + protein coding gene myo-inositol oxygenase
Tssr132657 15 89334970 to 89334979 9 + TSS region transcription start site region 132657
Tssr132658 15 89334986 to 89335017 31 + TSS region transcription start site region 132658
Cpgi7539 15 89335588 to 89335785 197 CpG island CpG island 7539
Tssr132659 15 89336016 to 89336025 9 + TSS region transcription start site region 132659
Tssr4688 15 89336853 to 89336862 9 + TSS region transcription start site region 4688
Tssr135864 15 89336886 to 89336896 10 - TSS region transcription start site region 135864
D15Jmp11 15 89349297 to 89349493 196 DNA segment DNA segment, Chr 15, Jackson Laboratory Mapping Panels 11
Lmf2 15 89351004 to 89355659 4655 - protein coding gene lipase maturation factor 2
Cpgi7540 15 89355203 to 89356050 847 CpG island CpG island 7540
Tssr135865 15 89355468 to 89355498 30 - TSS region transcription start site region 135865
Tssr135866 15 89355529 to 89355632 103 - TSS region transcription start site region 135866
Tssr135867 15 89355655 to 89355668 13 - TSS region transcription start site region 135867
Tssr132660 15 89355716 to 89355727 11 + TSS region transcription start site region 132660
Ncaph2 15 89355719 to 89372826 17107 + protein coding gene non-SMC condensin II complex, subunit H2
Tssr132661 15 89355730 to 89355741 11 + TSS region transcription start site region 132661
Tssr132662 15 89355755 to 89355782 27 + TSS region transcription start site region 132662
Tssr135868 15 89356451 to 89356458 7 - TSS region transcription start site region 135868
Tssr132663 15 89370526 to 89370543 17 + TSS region transcription start site region 132663
Sco2 15 89371637 to 89373818 2181 - protein coding gene SCO2 cytochrome c oxidase assembly protein
Tymp 15 89371931 to 89377036 5105 - protein coding gene thymidine phosphorylase
Cpgi7541 15 89373331 to 89374434 1103 CpG island CpG island 7541
4930423K06Rik 15 89373625 to 89375717 2092 unclassified non-coding RNA gene RIKEN cDNA 4930423K06 gene
Tssr135869 15 89373810 to 89373829 19 - TSS region transcription start site region 135869
Tssr135870 15 89373831 to 89373860 29 - TSS region transcription start site region 135870
Tssr135871 15 89373865 to 89373901 36 - TSS region transcription start site region 135871
Tssr132664 15 89373903 to 89373928 25 + TSS region transcription start site region 132664
Tssr132665 15 89373934 to 89373961 27 + TSS region transcription start site region 132665
Tssr135872 15 89374008 to 89374030 22 - TSS region transcription start site region 135872
Tssr135873 15 89374039 to 89374074 35 - TSS region transcription start site region 135873
Tssr135874 15 89374083 to 89374145 62 - TSS region transcription start site region 135874
Tssr132666 15 89376342 to 89376364 22 + TSS region transcription start site region 132666
Tssr135875 15 89377058 to 89377102 44 - TSS region transcription start site region 135875
Tssr135876 15 89377103 to 89377114 11 - TSS region transcription start site region 135876
Cpgi7542 15 89377220 to 89377825 605 CpG island CpG island 7542
Odf3b 15 89377449 to 89379282 1833 - protein coding gene outer dense fiber of sperm tails 3B
Tssr132667 15 89377718 to 89377726 8 + TSS region transcription start site region 132667
Cpgi7543 15 89378154 to 89379382 1228 CpG island CpG island 7543
Tssr135877 15 89378932 to 89378943 11 - TSS region transcription start site region 135877
Tssr135878 15 89378949 to 89378962 13 - TSS region transcription start site region 135878
Tssr135879 15 89378971 to 89378994 23 - TSS region transcription start site region 135879
Tssr135880 15 89378996 to 89379028 32 - TSS region transcription start site region 135880
Tssr135881 15 89379164 to 89379175 11 - TSS region transcription start site region 135881
Tssr135882 15 89379246 to 89379262 16 - TSS region transcription start site region 135882
Tssr135883 15 89379264 to 89379300 36 - TSS region transcription start site region 135883
Tssr135884 15 89379588 to 89379618 30 - TSS region transcription start site region 135884
Tssr4689 15 89384860 to 89384867 7 + TSS region transcription start site region 4689
Tssr132668 15 89384875 to 89384884 9 + TSS region transcription start site region 132668
Tssr132669 15 89384888 to 89384899 11 + TSS region transcription start site region 132669
Tssr132670 15 89384902 to 89384910 8 + TSS region transcription start site region 132670
Klhdc7b 15 89386891 to 89388708 1817 + protein coding gene kelch domain containing 7B
Cpgi7544 15 89388164 to 89388576 412 CpG island CpG island 7544
Syce3 15 89390174 to 89410503 20329 - protein coding gene synaptonemal complex central element protein 3
Cpgi7545 15 89409955 to 89410382 427 CpG island CpG island 7545