Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:87745627-88885637

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tafa5 15 87544299 to 87759364 215065 + protein coding gene TAFA chemokine like family member 5
Mir6393 15 87795850 to 87795943 93 - miRNA gene microRNA 6393
Gm35599 15 87803896 to 87945043 141147 + lncRNA gene predicted gene, 35599
Gm35711 15 87814502 to 87828943 14441 + lncRNA gene predicted gene, 35711
Gm35652 15 87830088 to 87835239 5151 + lncRNA gene predicted gene, 35652
Gm38626 15 87835234 to 87837725 2491 + lncRNA gene predicted gene, 38626
Lfibq10 15 87957884 to 90043083 2085199 QTL liver fibrosis QTL 10
Gm49472 15 87967416 to 87988517 21101 + lincRNA gene predicted gene, 49472
D15Mit170 15 88061255 to 88061375 120 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 170
Gm35772 15 88073744 to 88074878 1134 + lincRNA gene predicted gene, 35772
Cpgi7508 15 88123933 to 88124118 185 CpG island CpG island 7508
Tssr135807 15 88124430 to 88124431 1 - TSS region transcription start site region 135807
Gm41376 15 88215214 to 88217999 2785 - lncRNA gene predicted gene, 41376
4930445N06Rik 15 88268082 to 88315632 47550 - lincRNA gene RIKEN cDNA 4930445N06 gene
B230214G05Rik 15 88314874 to 88372651 57777 + lincRNA gene RIKEN cDNA B230214G05 gene
Tssr135808 15 88315627 to 88315637 10 - TSS region transcription start site region 135808
Cpgi7509 15 88400355 to 88400590 235 CpG island CpG island 7509
Gm35831 15 88421232 to 88514419 93187 - lncRNA gene predicted gene, 35831
Tssr135809 15 88600206 to 88600213 7 - TSS region transcription start site region 135809
Tssr132609 15 88600280 to 88600332 52 + TSS region transcription start site region 132609
Zdhhc25 15 88600302 to 88601669 1367 + protein coding gene zinc finger, DHHC domain containing 25
Cpgi7510 15 88600587 to 88600741 154 CpG island CpG island 7510
n-TMcat4 15 88641532 to 88641604 72 + tRNA gene nuclear encoded tRNA methionine 4 (anticodon CAT)
Gm35997 15 88656461 to 88662615 6154 - lncRNA gene predicted gene, 35997
Cpgi7511 15 88658446 to 88658648 202 CpG island CpG island 7511
Brd1 15 88687034 to 88734226 47192 - protein coding gene bromodomain containing 1
Tssr135810 15 88687985 to 88687989 4 - TSS region transcription start site region 135810
Tssr135811 15 88706403 to 88706431 28 - TSS region transcription start site region 135811
Tssr135812 15 88708345 to 88708362 17 - TSS region transcription start site region 135812
Tssr132610 15 88708464 to 88708483 19 + TSS region transcription start site region 132610
Tssr132611 15 88710147 to 88710160 13 + TSS region transcription start site region 132611
D15Ertd55e 15 88710924 to 88711156 232 DNA segment DNA segment, Chr 15, ERATO Doi 55, expressed
Cpgi7512 15 88732771 to 88734803 2032 CpG island CpG island 7512
Tssr135813 15 88734188 to 88734214 26 - TSS region transcription start site region 135813
Tssr135814 15 88734217 to 88734240 23 - TSS region transcription start site region 135814
Gm41377 15 88734309 to 88740884 6575 + lncRNA gene predicted gene, 41377
Cpgi7513 15 88750753 to 88752519 1766 CpG island CpG island 7513
Tssr132612 15 88751649 to 88751661 12 + TSS region transcription start site region 132612
Zbed4 15 88751666 to 88784516 32850 + protein coding gene zinc finger, BED type containing 4
Tssr132613 15 88751819 to 88751831 12 + TSS region transcription start site region 132613
Tssr132614 15 88752653 to 88752658 5 + TSS region transcription start site region 132614
Alg12 15 88805244 to 88819318 14074 - protein coding gene asparagine-linked glycosylation 12 (alpha-1,6-mannosyltransferase)
Cpgi7514 15 88818864 to 88820525 1661 CpG island CpG island 7514
Tssr135815 15 88819279 to 88819335 56 - TSS region transcription start site region 135815
Tssr135816 15 88819443 to 88819455 12 - TSS region transcription start site region 135816
Tssr132615 15 88819584 to 88819684 100 + TSS region transcription start site region 132615
Creld2 15 88819646 to 88826681 7035 + protein coding gene cysteine-rich with EGF-like domains 2
Tssr132616 15 88819694 to 88819717 23 + TSS region transcription start site region 132616
Gm23144 15 88835300 to 88835406 106 + snRNA gene predicted gene, 23144
Cpgi7515 15 88837214 to 88837795 581 CpG island CpG island 7515
Tssr132617 15 88839476 to 88839484 8 + TSS region transcription start site region 132617
Gm33049 15 88854441 to 88862506 8065 + protein coding gene predicted gene, 33049
Tssr132618 15 88854701 to 88854715 14 + TSS region transcription start site region 132618
Tssr132619 15 88858588 to 88858597 9 + TSS region transcription start site region 132619
Tssr132620 15 88858618 to 88858632 14 + TSS region transcription start site region 132620
Cpgi7516 15 88861336 to 88864383 3047 CpG island CpG island 7516
Tssr135817 15 88861993 to 88862008 15 - TSS region transcription start site region 135817
Tssr135818 15 88862014 to 88862028 14 - TSS region transcription start site region 135818
Tssr132621 15 88862178 to 88862193 15 + TSS region transcription start site region 132621
Pim3 15 88862194 to 88865726 3532 + protein coding gene proviral integration site 3
Tssr132622 15 88862240 to 88862245 5 + TSS region transcription start site region 132622
Tssr132623 15 88862467 to 88862484 17 + TSS region transcription start site region 132623
Tssr132624 15 88864103 to 88864114 11 + TSS region transcription start site region 132624
Tssr132625 15 88864200 to 88864208 8 + TSS region transcription start site region 132625
D15Mit124 15 88874937 to 88875070 133 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 124
Cpgi7517 15 88876366 to 88876698 332 CpG island CpG island 7517
Tssr132626 15 88876933 to 88876935 2 + TSS region transcription start site region 132626
Cpgi7518 15 88881892 to 88882111 219 CpG island CpG island 7518
Gm38643 15 88885459 to 88904036 18577 + lncRNA gene predicted gene, 38643