Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:8696612-9446621

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
In(15Rictor;Slc1a3)1Ove 15 6708379 to 8710764 2002385 chromosomal inversion inversion, Chr 15, Paul A Overbeek 1
Slc1a3 15 8634124 to 8710764 76640 - protein coding gene solute carrier family 1 (glial high affinity glutamate transporter), member 3
Cpgi6937 15 8710193 to 8710643 450 CpG island CpG island 6937
Tssr133679 15 8710444 to 8710498 54 - TSS region transcription start site region 133679
Tssr133680 15 8710734 to 8710760 26 - TSS region transcription start site region 133680
Gm31340 15 8711026 to 8864483 153457 + lncRNA gene predicted gene, 31340
Tssr130599 15 8832279 to 8832293 14 + TSS region transcription start site region 130599
Tssr130600 15 8832321 to 8832333 12 + TSS region transcription start site region 130600
Tssr130601 15 8838067 to 8838082 15 + TSS region transcription start site region 130601
Tssr130602 15 8914095 to 8914115 20 + TSS region transcription start site region 130602
Gm5043 15 8914484 to 8915303 819 + pseudogene predicted gene 5043
Gm5210 15 8917798 to 8929171 11373 - pseudogene predicted gene 5210
Tssr130603 15 8967929 to 8967936 7 + TSS region transcription start site region 130603
Tssr130604 15 8967943 to 8967960 17 + TSS region transcription start site region 130604
Ranbp3l 15 8967949 to 9067335 99386 + protein coding gene RAN binding protein 3-like
Tssr130605 15 8967963 to 8967982 19 + TSS region transcription start site region 130605
Tssr130606 15 8967996 to 8968011 15 + TSS region transcription start site region 130606
Tssr130607 15 8968288 to 8968293 5 + TSS region transcription start site region 130607
Tssr130608 15 8968319 to 8968368 49 + TSS region transcription start site region 130608
Tssr130609 15 8968389 to 8968392 3 + TSS region transcription start site region 130609
A430110A21Rik 15 8993330 to 8994478 1148 unclassified gene RIKEN cDNA A430110A21 gene
Gm46511 15 9009205 to 9012856 3651 - lncRNA gene predicted gene, 46511
Cpgi6938 15 9062941 to 9063115 174 CpG island CpG island 6938
Cpgi6939 15 9070750 to 9072328 1578 CpG island CpG island 6939
Tssr130610 15 9071252 to 9071273 21 + TSS region transcription start site region 130610
Nadk2 15 9071260 to 9110496 39236 + protein coding gene NAD kinase 2, mitochondrial
Tssr130611 15 9071289 to 9071304 15 + TSS region transcription start site region 130611
Tssr130612 15 9071327 to 9071340 13 + TSS region transcription start site region 130612
Tssr130613 15 9071393 to 9071471 78 + TSS region transcription start site region 130613
Tssr130614 15 9071612 to 9071621 9 + TSS region transcription start site region 130614
Tssr130615 15 9071624 to 9071635 11 + TSS region transcription start site region 130615
Tssr130616 15 9071649 to 9071724 75 + TSS region transcription start site region 130616
Tssr130617 15 9072921 to 9072964 43 + TSS region transcription start site region 130617
Tssr130618 15 9073024 to 9073038 14 + TSS region transcription start site region 130618
Tssr130619 15 9073183 to 9073187 4 + TSS region transcription start site region 130619
Tssr130620 15 9092205 to 9092213 8 + TSS region transcription start site region 130620
Tssr130621 15 9092224 to 9092234 10 + TSS region transcription start site region 130621
Tssr130622 15 9092239 to 9092243 4 + TSS region transcription start site region 130622
Skp2 15 9111985 to 9155425 43440 - protein coding gene S-phase kinase-associated protein 2 (p45)
Tssr133681 15 9136119 to 9136123 4 - TSS region transcription start site region 133681
Cpgi6940 15 9140238 to 9141202 964 CpG island CpG island 6940
Tssr133682 15 9140316 to 9140369 53 - TSS region transcription start site region 133682
Tssr133683 15 9140374 to 9140388 14 - TSS region transcription start site region 133683
Tssr130623 15 9140527 to 9140577 50 + TSS region transcription start site region 130623
Lmbrd2 15 9140530 to 9197845 57315 + protein coding gene LMBR1 domain containing 2
Tssr4547 15 9140598 to 9140610 12 + TSS region transcription start site region 4547
Tssr133684 15 9155336 to 9155341 5 - TSS region transcription start site region 133684
Tssr4548 15 9155343 to 9155350 7 - TSS region transcription start site region 4548
Tssr133685 15 9155354 to 9155359 5 - TSS region transcription start site region 133685
Tssr133686 15 9155360 to 9155378 18 - TSS region transcription start site region 133686
Tssr133687 15 9155381 to 9155398 17 - TSS region transcription start site region 133687
Tssr133688 15 9155405 to 9155408 3 - TSS region transcription start site region 133688
Tssr133689 15 9155413 to 9155416 3 - TSS region transcription start site region 133689
Tssr133690 15 9155422 to 9155423 1 - TSS region transcription start site region 133690
Tssr130624 15 9155514 to 9155537 23 + TSS region transcription start site region 130624
6720484C15Rik 15 9180603 to 9181001 398 unclassified gene RIKEN cDNA 6720484C15 gene
3110076C19Rik 15 9181136 to 9181699 563 unclassified gene RIKEN cDNA 3110076C19 gene
Tssr130625 15 9186245 to 9186250 5 + TSS region transcription start site region 130625
Tssr130626 15 9186262 to 9186273 11 + TSS region transcription start site region 130626
Tssr130627 15 9186288 to 9186301 13 + TSS region transcription start site region 130627
D15Mit248 15 9193934 to 9194081 147 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology-248
Tssr130628 15 9197031 to 9197060 29 + TSS region transcription start site region 130628
3110073H01Rik 15 9199819 to 9202482 2663 unclassified gene RIKEN cDNA 3110073H01 gene
Tssr130629 15 9203658 to 9203660 2 + TSS region transcription start site region 130629
Gm8139 15 9250522 to 9261327 10805 - pseudogene predicted gene 8139
D15Mit175.3 15 9272838 to 9272991 153 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 175.3
Bpq31 15 9272936 to 9273109 173 QTL blood pressure QTL 31
D15Mit175 15 9272936 to 9273109 173 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 175
Ugt3a1 15 9279822 to 9315038 35216 + protein coding gene UDP glycosyltransferases 3 family, polypeptide A1
Tssr130630 15 9279841 to 9279865 24 + TSS region transcription start site region 130630
Tssr130631 15 9279872 to 9279881 9 + TSS region transcription start site region 130631
Gm2360 15 9318959 to 9322231 3272 + pseudogene predicted gene 2360
Ugt3a2 15 9335551 to 9370955 35404 + protein coding gene UDP glycosyltransferases 3 family, polypeptide A2
Tssr130632 15 9335565 to 9335623 58 + TSS region transcription start site region 130632
Tssr133691 15 9357073 to 9357077 4 - TSS region transcription start site region 133691
Tssr130633 15 9370333 to 9370344 11 + TSS region transcription start site region 130633
Tssr130634 15 9370380 to 9370391 11 + TSS region transcription start site region 130634
Tssr130635 15 9370397 to 9370407 10 + TSS region transcription start site region 130635
Tssr130636 15 9370697 to 9370704 7 + TSS region transcription start site region 130636
Gm5219 15 9424179 to 9431334 7155 + pseudogene predicted gene 5219
Capsl 15 9436028 to 9466038 30010 + protein coding gene calcyphosine-like
Tssr130637 15 9436039 to 9436083 44 + TSS region transcription start site region 130637
Tssr130638 15 9436085 to 9436103 18 + TSS region transcription start site region 130638
Tssr130639 15 9436108 to 9436125 17 + TSS region transcription start site region 130639
Shali3 15 43448484 to 9272936 -34175548 QTL survival time to hyperoxic acute lung injury 3
Habiir5 15 43448484 to 9272936 -34175548 QTL hyperoxic acute lung injury imprinted region 5
Ssrq2 15 56323454 to 9272936 -47050518 QTL stress response QTL 2
Rapop5 15 79590561 to 9272936 -70317625 QTL radiation-induced apoptosis 5