Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:86684502-88958943

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130 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pitm5 15 83079860 to 87170187 4090327 QTL prion incubation time 5
Gm35118 15 86692414 to 86705167 12753 - lncRNA gene predicted gene, 35118
Tssr132592 15 86704160 to 86704174 14 + TSS region transcription start site region 132592
Gm49464 15 86704291 to 86711545 7254 + lincRNA gene predicted gene, 49464
Tssr135805 15 86706411 to 86706424 13 - TSS region transcription start site region 135805
Tssr135806 15 86706436 to 86706447 11 - TSS region transcription start site region 135806
Gm49465 15 86726495 to 86726759 264 + pseudogene predicted gene, 49465
4930543I03Rik 15 86737826 to 86766140 28314 + lincRNA gene RIKEN cDNA 4930543I03 gene
Gm35284 15 86902013 to 86904459 2446 + lncRNA gene predicted gene, 35284
Gm49466 15 86923637 to 86924082 445 - lincRNA gene predicted gene, 49466
Gm49467 15 86939107 to 86939496 389 + pseudogene predicted gene, 49467
Gm49468 15 86990519 to 86991308 789 + lincRNA gene predicted gene, 49468
Gm23416 15 87068993 to 87069087 94 + miRNA gene predicted gene, 23416
Gm49469 15 87097532 to 87100177 2645 + lincRNA gene predicted gene, 49469
Gm49470 15 87139086 to 87179926 40840 + lincRNA gene predicted gene, 49470
n-R5s42 15 87169113 to 87169216 103 + rRNA gene nuclear encoded rRNA 5S 42
D15Mit241 15 87170085 to 87170187 102 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 241
A930027H12Rik 15 87243840 to 87253979 10139 + lincRNA gene RIKEN cDNA A930027H12 gene
D15Mit216 15 87276743 to 87276914 171 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 216
D15Mit262 15 87280611 to 87280733 122 DNA segment DNA Segment, Chr 15 Massachusetts Institute of Technology 262
Tssr132593 15 87327231 to 87327233 2 + TSS region transcription start site region 132593
Tssr4686 15 87342063 to 87342066 3 + TSS region transcription start site region 4686
Gm35422 15 87454022 to 87469667 15645 - lncRNA gene predicted gene, 35422
D15Mit96 15 87461452 to 87461591 139 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 96
Sluc26 15 87461452 to 87461591 139 QTL susceptibility to lung cancer 26
Alprf 15 87465070 to 90390365 2925295 QTL alcohol preference
Pitm4 15 87465070 to 87465215 145 QTL prion incubation time 4
D15Mit159 15 87465070 to 87465215 145 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 159
Dbsty4 15 87465070 to 87465215 145 QTL diabesity 4
Gm35471 15 87529906 to 87543945 14039 - lncRNA gene predicted gene, 35471
Cpgi7506 15 87543611 to 87545316 1705 CpG island CpG island 7506
Tssr132594 15 87544188 to 87544262 74 + TSS region transcription start site region 132594
Tssr132595 15 87544286 to 87544304 18 + TSS region transcription start site region 132595
Tafa5 15 87544299 to 87759364 215065 + protein coding gene TAFA chemokine like family member 5
Cpgi7507 15 87623650 to 87626040 2390 CpG island CpG island 7507
Tssr132596 15 87624258 to 87624291 33 + TSS region transcription start site region 132596
Tssr132597 15 87624296 to 87624309 13 + TSS region transcription start site region 132597
Tssr132598 15 87625098 to 87625106 8 + TSS region transcription start site region 132598
Tssr132599 15 87625214 to 87625230 16 + TSS region transcription start site region 132599
Tssr132600 15 87625245 to 87625261 16 + TSS region transcription start site region 132600
Tssr132601 15 87632077 to 87632085 8 + TSS region transcription start site region 132601
Tssr132602 15 87652039 to 87652049 10 + TSS region transcription start site region 132602
Tssr132603 15 87654936 to 87654945 9 + TSS region transcription start site region 132603
Tssr132604 15 87654972 to 87654981 9 + TSS region transcription start site region 132604
Tssr132605 15 87655003 to 87655019 16 + TSS region transcription start site region 132605
Tssr132606 15 87655028 to 87655035 7 + TSS region transcription start site region 132606
Tssr132607 15 87715542 to 87715569 27 + TSS region transcription start site region 132607
Tssr132608 15 87715592 to 87715614 22 + TSS region transcription start site region 132608
Mir6393 15 87795850 to 87795943 93 - miRNA gene microRNA 6393
Gm35599 15 87803896 to 87945043 141147 + lncRNA gene predicted gene, 35599
Gm35711 15 87814502 to 87828943 14441 + lncRNA gene predicted gene, 35711
Gm35652 15 87830088 to 87835239 5151 + lncRNA gene predicted gene, 35652
Gm38626 15 87835234 to 87837725 2491 + lncRNA gene predicted gene, 38626
Lfibq10 15 87957884 to 90043083 2085199 QTL liver fibrosis QTL 10
Gm49472 15 87967416 to 87988517 21101 + lincRNA gene predicted gene, 49472
D15Mit170 15 88061255 to 88061375 120 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 170
Gm35772 15 88073744 to 88074878 1134 + lincRNA gene predicted gene, 35772
Cpgi7508 15 88123933 to 88124118 185 CpG island CpG island 7508
Tssr135807 15 88124430 to 88124431 1 - TSS region transcription start site region 135807
Gm41376 15 88215214 to 88217999 2785 - lncRNA gene predicted gene, 41376
4930445N06Rik 15 88268082 to 88315632 47550 - lincRNA gene RIKEN cDNA 4930445N06 gene
B230214G05Rik 15 88314874 to 88372651 57777 + lincRNA gene RIKEN cDNA B230214G05 gene
Tssr135808 15 88315627 to 88315637 10 - TSS region transcription start site region 135808
Cpgi7509 15 88400355 to 88400590 235 CpG island CpG island 7509
Gm35831 15 88421232 to 88514419 93187 - lncRNA gene predicted gene, 35831
Tssr135809 15 88600206 to 88600213 7 - TSS region transcription start site region 135809
Tssr132609 15 88600280 to 88600332 52 + TSS region transcription start site region 132609
Zdhhc25 15 88600302 to 88601669 1367 + protein coding gene zinc finger, DHHC domain containing 25
Cpgi7510 15 88600587 to 88600741 154 CpG island CpG island 7510
n-TMcat4 15 88641532 to 88641604 72 + tRNA gene nuclear encoded tRNA methionine 4 (anticodon CAT)
Gm35997 15 88656461 to 88662615 6154 - lncRNA gene predicted gene, 35997
Cpgi7511 15 88658446 to 88658648 202 CpG island CpG island 7511
Brd1 15 88687034 to 88734226 47192 - protein coding gene bromodomain containing 1
Tssr135810 15 88687985 to 88687989 4 - TSS region transcription start site region 135810
Tssr135811 15 88706403 to 88706431 28 - TSS region transcription start site region 135811
Tssr135812 15 88708345 to 88708362 17 - TSS region transcription start site region 135812
Tssr132610 15 88708464 to 88708483 19 + TSS region transcription start site region 132610
Tssr132611 15 88710147 to 88710160 13 + TSS region transcription start site region 132611
D15Ertd55e 15 88710924 to 88711156 232 DNA segment DNA segment, Chr 15, ERATO Doi 55, expressed
Cpgi7512 15 88732771 to 88734803 2032 CpG island CpG island 7512
Tssr135813 15 88734188 to 88734214 26 - TSS region transcription start site region 135813
Tssr135814 15 88734217 to 88734240 23 - TSS region transcription start site region 135814
Gm41377 15 88734309 to 88740884 6575 + lncRNA gene predicted gene, 41377
Cpgi7513 15 88750753 to 88752519 1766 CpG island CpG island 7513
Tssr132612 15 88751649 to 88751661 12 + TSS region transcription start site region 132612
Zbed4 15 88751666 to 88784516 32850 + protein coding gene zinc finger, BED type containing 4
Tssr132613 15 88751819 to 88751831 12 + TSS region transcription start site region 132613
Tssr132614 15 88752653 to 88752658 5 + TSS region transcription start site region 132614
Alg12 15 88805244 to 88819318 14074 - protein coding gene asparagine-linked glycosylation 12 (alpha-1,6-mannosyltransferase)
Cpgi7514 15 88818864 to 88820525 1661 CpG island CpG island 7514
Tssr135815 15 88819279 to 88819335 56 - TSS region transcription start site region 135815
Tssr135816 15 88819443 to 88819455 12 - TSS region transcription start site region 135816
Tssr132615 15 88819584 to 88819684 100 + TSS region transcription start site region 132615
Creld2 15 88819646 to 88826681 7035 + protein coding gene cysteine-rich with EGF-like domains 2
Tssr132616 15 88819694 to 88819717 23 + TSS region transcription start site region 132616
Gm23144 15 88835300 to 88835406 106 + snRNA gene predicted gene, 23144
Cpgi7515 15 88837214 to 88837795 581 CpG island CpG island 7515
Tssr132617 15 88839476 to 88839484 8 + TSS region transcription start site region 132617
Gm33049 15 88854441 to 88862506 8065 + protein coding gene predicted gene, 33049
Tssr132618 15 88854701 to 88854715 14 + TSS region transcription start site region 132618
Tssr132619 15 88858588 to 88858597 9 + TSS region transcription start site region 132619
Tssr132620 15 88858618 to 88858632 14 + TSS region transcription start site region 132620
Cpgi7516 15 88861336 to 88864383 3047 CpG island CpG island 7516
Tssr135817 15 88861993 to 88862008 15 - TSS region transcription start site region 135817
Tssr135818 15 88862014 to 88862028 14 - TSS region transcription start site region 135818
Tssr132621 15 88862178 to 88862193 15 + TSS region transcription start site region 132621
Pim3 15 88862194 to 88865726 3532 + protein coding gene proviral integration site 3
Tssr132622 15 88862240 to 88862245 5 + TSS region transcription start site region 132622
Tssr132623 15 88862467 to 88862484 17 + TSS region transcription start site region 132623
Tssr132624 15 88864103 to 88864114 11 + TSS region transcription start site region 132624
Tssr132625 15 88864200 to 88864208 8 + TSS region transcription start site region 132625
D15Mit124 15 88874937 to 88875070 133 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 124
Cpgi7517 15 88876366 to 88876698 332 CpG island CpG island 7517
Tssr132626 15 88876933 to 88876935 2 + TSS region transcription start site region 132626
Cpgi7518 15 88881892 to 88882111 219 CpG island CpG island 7518
Gm38643 15 88885459 to 88904036 18577 + lncRNA gene predicted gene, 38643
Gm20621 15 88889780 to 88891525 1745 - sense overlapping lncRNA gene predicted gene 20621
Cpgi7519 15 88890527 to 88891515 988 CpG island CpG island 7519
Ttll8 15 88890633 to 88954418 63785 - protein coding gene tubulin tyrosine ligase-like family, member 8
Tssr4687 15 88891227 to 88891240 13 + TSS region transcription start site region 4687
Tssr135819 15 88891455 to 88891478 23 - TSS region transcription start site region 135819
Tssr135820 15 88891481 to 88891518 37 - TSS region transcription start site region 135820
Tssr135821 15 88891520 to 88891530 10 - TSS region transcription start site region 135821
Tssr135822 15 88900631 to 88900634 3 - TSS region transcription start site region 135822
D15Mit73 15 88910432 to 88910661 229 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 73
Cpgi7520 15 88954300 to 88955217 917 CpG island CpG island 7520
Tssr135823 15 88954390 to 88954397 7 - TSS region transcription start site region 135823
Tssr135824 15 88954400 to 88954446 46 - TSS region transcription start site region 135824
Tssr135825 15 88954560 to 88954570 10 - TSS region transcription start site region 135825
Mlc1 15 88955884 to 88979007 23123 - protein coding gene megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)