Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:86223840-88273979

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pitm5 15 83079860 to 87170187 4090327 QTL prion incubation time 5
Tbc1d22a 15 86214459 to 86498503 284044 + protein coding gene TBC1 domain family, member 22a
Tssr4685 15 86234707 to 86234728 21 + TSS region transcription start site region 4685
Tssr132581 15 86234872 to 86234885 13 + TSS region transcription start site region 132581
Tssr132582 15 86277636 to 86277682 46 + TSS region transcription start site region 132582
Tssr132583 15 86325229 to 86325250 21 + TSS region transcription start site region 132583
Tssr132584 15 86326005 to 86326014 9 + TSS region transcription start site region 132584
Tssr132585 15 86333772 to 86333784 12 + TSS region transcription start site region 132585
Tssr132586 15 86333832 to 86333844 12 + TSS region transcription start site region 132586
Tssr132587 15 86334472 to 86334486 14 + TSS region transcription start site region 132587
Tssr132588 15 86334976 to 86335013 37 + TSS region transcription start site region 132588
D15Ertd320e 15 86354318 to 86354521 203 DNA segment DNA segment, Chr 15, ERATO Doi 320, expressed
Tssr135801 15 86365097 to 86365101 4 - TSS region transcription start site region 135801
Tssr132589 15 86415434 to 86415438 4 + TSS region transcription start site region 132589
Tssr132590 15 86436100 to 86436107 7 + TSS region transcription start site region 132590
A930001M01Rik 15 86453352 to 86475098 21746 - antisense lncRNA gene RIKEN cDNA A930001M01 gene
Tssr132591 15 86468999 to 86469000 1 + TSS region transcription start site region 132591
Tssr135802 15 86475091 to 86475108 17 - TSS region transcription start site region 135802
Tssr135803 15 86574448 to 86574457 9 - TSS region transcription start site region 135803
Tssr135804 15 86574491 to 86574499 8 - TSS region transcription start site region 135804
D15Mit37 15 86597220 to 86597367 147 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 37
Gm34965 15 86604929 to 86605632 703 + lncRNA gene predicted gene, 34965
Gm35118 15 86692414 to 86705167 12753 - lncRNA gene predicted gene, 35118
Tssr132592 15 86704160 to 86704174 14 + TSS region transcription start site region 132592
Gm49464 15 86704291 to 86711545 7254 + lincRNA gene predicted gene, 49464
Tssr135805 15 86706411 to 86706424 13 - TSS region transcription start site region 135805
Tssr135806 15 86706436 to 86706447 11 - TSS region transcription start site region 135806
Gm49465 15 86726495 to 86726759 264 + pseudogene predicted gene, 49465
4930543I03Rik 15 86737826 to 86766140 28314 + lincRNA gene RIKEN cDNA 4930543I03 gene
Gm35284 15 86902013 to 86904459 2446 + lncRNA gene predicted gene, 35284
Gm49466 15 86923637 to 86924082 445 - lincRNA gene predicted gene, 49466
Gm49467 15 86939107 to 86939496 389 + pseudogene predicted gene, 49467
Gm49468 15 86990519 to 86991308 789 + lincRNA gene predicted gene, 49468
Gm23416 15 87068993 to 87069087 94 + miRNA gene predicted gene, 23416
Gm49469 15 87097532 to 87100177 2645 + lincRNA gene predicted gene, 49469
Gm49470 15 87139086 to 87179926 40840 + lincRNA gene predicted gene, 49470
n-R5s42 15 87169113 to 87169216 103 + rRNA gene nuclear encoded rRNA 5S 42
D15Mit241 15 87170085 to 87170187 102 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 241
A930027H12Rik 15 87243840 to 87253979 10139 + lincRNA gene RIKEN cDNA A930027H12 gene
D15Mit216 15 87276743 to 87276914 171 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 216
D15Mit262 15 87280611 to 87280733 122 DNA segment DNA Segment, Chr 15 Massachusetts Institute of Technology 262
Tssr132593 15 87327231 to 87327233 2 + TSS region transcription start site region 132593
Tssr4686 15 87342063 to 87342066 3 + TSS region transcription start site region 4686
Gm35422 15 87454022 to 87469667 15645 - lncRNA gene predicted gene, 35422
D15Mit96 15 87461452 to 87461591 139 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 96
Sluc26 15 87461452 to 87461591 139 QTL susceptibility to lung cancer 26
Pitm4 15 87465070 to 87465215 145 QTL prion incubation time 4
Dbsty4 15 87465070 to 87465215 145 QTL diabesity 4
D15Mit159 15 87465070 to 87465215 145 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 159
Alprf 15 87465070 to 90390365 2925295 QTL alcohol preference
Gm35471 15 87529906 to 87543945 14039 - lncRNA gene predicted gene, 35471
Cpgi7506 15 87543611 to 87545316 1705 CpG island CpG island 7506
Tssr132594 15 87544188 to 87544262 74 + TSS region transcription start site region 132594
Tssr132595 15 87544286 to 87544304 18 + TSS region transcription start site region 132595
Tafa5 15 87544299 to 87759364 215065 + protein coding gene TAFA chemokine like family member 5
Cpgi7507 15 87623650 to 87626040 2390 CpG island CpG island 7507
Tssr132596 15 87624258 to 87624291 33 + TSS region transcription start site region 132596
Tssr132597 15 87624296 to 87624309 13 + TSS region transcription start site region 132597
Tssr132598 15 87625098 to 87625106 8 + TSS region transcription start site region 132598
Tssr132599 15 87625214 to 87625230 16 + TSS region transcription start site region 132599
Tssr132600 15 87625245 to 87625261 16 + TSS region transcription start site region 132600
Tssr132601 15 87632077 to 87632085 8 + TSS region transcription start site region 132601
Tssr132602 15 87652039 to 87652049 10 + TSS region transcription start site region 132602
Tssr132603 15 87654936 to 87654945 9 + TSS region transcription start site region 132603
Tssr132604 15 87654972 to 87654981 9 + TSS region transcription start site region 132604
Tssr132605 15 87655003 to 87655019 16 + TSS region transcription start site region 132605
Tssr132606 15 87655028 to 87655035 7 + TSS region transcription start site region 132606
Tssr132607 15 87715542 to 87715569 27 + TSS region transcription start site region 132607
Tssr132608 15 87715592 to 87715614 22 + TSS region transcription start site region 132608
Mir6393 15 87795850 to 87795943 93 - miRNA gene microRNA 6393
Gm35599 15 87803896 to 87945043 141147 + lncRNA gene predicted gene, 35599
Gm35711 15 87814502 to 87828943 14441 + lncRNA gene predicted gene, 35711
Gm35652 15 87830088 to 87835239 5151 + lncRNA gene predicted gene, 35652
Gm38626 15 87835234 to 87837725 2491 + lncRNA gene predicted gene, 38626
Lfibq10 15 87957884 to 90043083 2085199 QTL liver fibrosis QTL 10
Gm49472 15 87967416 to 87988517 21101 + lincRNA gene predicted gene, 49472
D15Mit170 15 88061255 to 88061375 120 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 170
Gm35772 15 88073744 to 88074878 1134 + lincRNA gene predicted gene, 35772
Cpgi7508 15 88123933 to 88124118 185 CpG island CpG island 7508
Tssr135807 15 88124430 to 88124431 1 - TSS region transcription start site region 135807
Gm41376 15 88215214 to 88217999 2785 - lncRNA gene predicted gene, 41376
4930445N06Rik 15 88268082 to 88315632 47550 - lincRNA gene RIKEN cDNA 4930445N06 gene