Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:85821467-86221480

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pkdrej 15 85814676 to 85821733 7057 - protein coding gene polycystin (PKD) family receptor for egg jelly
Cpgi7493 15 85821107 to 85822142 1035 CpG island CpG island 7493
Tssr135769 15 85821472 to 85821514 42 - TSS region transcription start site region 135769
Tssr135770 15 85821787 to 85821801 14 - TSS region transcription start site region 135770
Cpgi7494 15 85832066 to 85832622 556 CpG island CpG island 7494
Tssr132553 15 85832301 to 85832317 16 + TSS region transcription start site region 132553
Ttc38 15 85832306 to 85858822 26516 + protein coding gene tetratricopeptide repeat domain 38
Tssr132554 15 85832319 to 85832351 32 + TSS region transcription start site region 132554
Cpgi7495 15 85851193 to 85851373 180 CpG island CpG island 7495
Cpgi7496 15 85859414 to 85860116 702 CpG island CpG island 7496
Tssr132555 15 85859656 to 85859679 23 + TSS region transcription start site region 132555
Tssr132556 15 85859689 to 85859744 55 + TSS region transcription start site region 132556
Gtse1 15 85859745 to 85876573 16828 + protein coding gene G two S phase expressed protein 1
Tssr132557 15 85859752 to 85859775 23 + TSS region transcription start site region 132557
Tssr132558 15 85859961 to 85860013 52 + TSS region transcription start site region 132558
Tssr132559 15 85860014 to 85860057 43 + TSS region transcription start site region 132559
Gm49548 15 85877647 to 85879090 1443 - bidirectional promoter lncRNA gene predicted gene, 49548
Cpgi7497 15 85878670 to 85879822 1152 CpG island CpG island 7497
Tssr132560 15 85879306 to 85879372 66 + TSS region transcription start site region 132560
Trmu 15 85879312 to 85897394 18082 + protein coding gene tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
4833417J16Rik 15 85886110 to 85887237 1127 unclassified gene RIKEN cDNA 4833417J16 gene
Celsr1 15 85898929 to 86033777 134848 - protein coding gene cadherin, EGF LAG seven-pass G-type receptor 1
Tssr135771 15 85963517 to 85963523 6 - TSS region transcription start site region 135771
Tssr132561 15 86004298 to 86004338 40 + TSS region transcription start site region 132561
Tssr135772 15 86004985 to 86004989 4 - TSS region transcription start site region 135772
Tssr135773 15 86019797 to 86019801 4 - TSS region transcription start site region 135773
Tssr135774 15 86021467 to 86021480 13 - TSS region transcription start site region 135774
Tssr135775 15 86029961 to 86029994 33 - TSS region transcription start site region 135775
Cpgi7498 15 86031951 to 86035004 3053 CpG island CpG island 7498
Tssr135776 15 86034016 to 86034027 11 - TSS region transcription start site region 135776
Tssr135777 15 86034043 to 86034106 63 - TSS region transcription start site region 135777
Tssr135778 15 86034177 to 86034208 31 - TSS region transcription start site region 135778
Gm34764 15 86034250 to 86040244 5994 + lncRNA gene predicted gene, 34764
Tssr132562 15 86036503 to 86036511 8 + TSS region transcription start site region 132562
Tssr135779 15 86051280 to 86051305 25 - TSS region transcription start site region 135779
Gm41375 15 86053567 to 86058620 5053 - lncRNA gene predicted gene, 41375
Gramd4 15 86057695 to 86137634 79939 + protein coding gene GRAM domain containing 4
Cpgi7499 15 86057951 to 86059582 1631 CpG island CpG island 7499
Tssr135780 15 86058575 to 86058591 16 - TSS region transcription start site region 135780
Tssr132563 15 86058746 to 86058793 47 + TSS region transcription start site region 132563
Tssr132564 15 86058796 to 86058851 55 + TSS region transcription start site region 132564
Tssr135781 15 86067458 to 86067484 26 - TSS region transcription start site region 135781
Tssr132565 15 86067706 to 86067744 38 + TSS region transcription start site region 132565
Tssr132566 15 86067816 to 86067853 37 + TSS region transcription start site region 132566
Tssr132567 15 86074791 to 86074810 19 + TSS region transcription start site region 132567
Gm15722 15 86087640 to 86090060 2420 - antisense lncRNA gene predicted gene 15722
Cpgi7500 15 86135480 to 86135632 152 CpG island CpG island 7500
Cerk 15 86139128 to 86186141 47013 - protein coding gene ceramide kinase
Tssr135782 15 86141348 to 86141386 38 - TSS region transcription start site region 135782
Gm24011 15 86149584 to 86149851 267 + unclassified non-coding RNA gene predicted gene, 24011
Tssr135783 15 86150565 to 86150570 5 - TSS region transcription start site region 135783
Tssr135784 15 86160426 to 86160437 11 - TSS region transcription start site region 135784
Tssr135785 15 86160526 to 86160542 16 - TSS region transcription start site region 135785
Cpgi7501 15 86164879 to 86165159 280 CpG island CpG island 7501
Tssr135786 15 86168245 to 86168269 24 - TSS region transcription start site region 135786
Tssr132568 15 86168467 to 86168510 43 + TSS region transcription start site region 132568
Tssr135787 15 86169829 to 86169842 13 - TSS region transcription start site region 135787
Tssr132569 15 86169931 to 86169954 23 + TSS region transcription start site region 132569
Tssr132570 15 86182120 to 86182139 19 + TSS region transcription start site region 132570
Tssr132571 15 86182815 to 86182850 35 + TSS region transcription start site region 132571
Tssr132572 15 86182904 to 86182916 12 + TSS region transcription start site region 132572
Cpgi7502 15 86184790 to 86186311 1521 CpG island CpG island 7502
Tssr135788 15 86185660 to 86185671 11 - TSS region transcription start site region 135788
Tssr135789 15 86185679 to 86185766 87 - TSS region transcription start site region 135789
Gm15569 15 86185728 to 86187152 1424 + antisense lncRNA gene predicted gene 15569
Tssr135790 15 86185862 to 86185937 75 - TSS region transcription start site region 135790
Tssr135791 15 86186002 to 86186027 25 - TSS region transcription start site region 135791
Tssr135792 15 86186032 to 86186057 25 - TSS region transcription start site region 135792
Tssr135793 15 86186136 to 86186185 49 - TSS region transcription start site region 135793
Tssr135794 15 86186313 to 86186354 41 - TSS region transcription start site region 135794
Tssr135795 15 86186919 to 86186926 7 - TSS region transcription start site region 135795
Cpgi7503 15 86194723 to 86194875 152 CpG island CpG island 7503
Tssr132573 15 86194736 to 86194773 37 + TSS region transcription start site region 132573
Tssr132574 15 86194822 to 86194854 32 + TSS region transcription start site region 132574
Tssr132575 15 86194876 to 86194895 19 + TSS region transcription start site region 132575
Tssr132576 15 86194898 to 86194909 11 + TSS region transcription start site region 132576
Tssr132577 15 86195091 to 86195116 25 + TSS region transcription start site region 132577
Tssr135796 15 86202696 to 86202722 26 - TSS region transcription start site region 135796
Tssr132578 15 86202818 to 86202834 16 + TSS region transcription start site region 132578
Cpgi7504 15 86204429 to 86204675 246 CpG island CpG island 7504
Gm22818 15 86212554 to 86212657 103 - snRNA gene predicted gene, 22818
2810001A02Rik 15 86213735 to 86214388 653 unclassified non-coding RNA gene RIKEN cDNA 2810001A02 gene
Cpgi7505 15 86213799 to 86215073 1274 CpG island CpG island 7505
Tssr135797 15 86214286 to 86214297 11 - TSS region transcription start site region 135797
Tssr135798 15 86214306 to 86214325 19 - TSS region transcription start site region 135798
Tssr135799 15 86214335 to 86214395 60 - TSS region transcription start site region 135799
Tssr132579 15 86214431 to 86214455 24 + TSS region transcription start site region 132579
Tbc1d22a 15 86214459 to 86498503 284044 + protein coding gene TBC1 domain family, member 22a
Tssr132580 15 86214461 to 86214472 11 + TSS region transcription start site region 132580