Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:85697414-87700167

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191 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pitm5 15 83079860 to 87170187 4090327 QTL prion incubation time 5
Lncppara 15 85703773 to 85707524 3751 + lncRNA gene long noncoding RNA near Ppara
Tssr135762 15 85703982 to 85703984 2 - TSS region transcription start site region 135762
Mirc31 15 85706603 to 85707403 800 complex/cluster/region microRNA cluster 31, including Mirlet7c-2 through Mirlet7b
Mirlet7c-2 15 85706603 to 85706697 94 + miRNA gene microRNA let7c-2
Mirlet7b 15 85707319 to 85707403 84 + miRNA gene microRNA let7b
Gm34622 15 85708844 to 85713345 4501 - lncRNA gene predicted gene, 34622
Tssr135763 15 85711605 to 85711612 7 - TSS region transcription start site region 135763
Tssr132536 15 85723825 to 85723849 24 + TSS region transcription start site region 132536
Gm46529 15 85723850 to 85730541 6691 + lncRNA gene predicted gene, 46529
Cpgi7491 15 85734485 to 85736402 1917 CpG island CpG island 7491
Tssr132537 15 85734908 to 85734925 17 + TSS region transcription start site region 132537
Ppara 15 85734983 to 85802819 67836 + protein coding gene peroxisome proliferator activated receptor alpha
Tssr132538 15 85735584 to 85735615 31 + TSS region transcription start site region 132538
Tssr132539 15 85735621 to 85735650 29 + TSS region transcription start site region 132539
Tssr132540 15 85735754 to 85735808 54 + TSS region transcription start site region 132540
Tssr132541 15 85735811 to 85735823 12 + TSS region transcription start site region 132541
Tssr132542 15 85736107 to 85736122 15 + TSS region transcription start site region 132542
Tssr132543 15 85736341 to 85736352 11 + TSS region transcription start site region 132543
Tssr132544 15 85736799 to 85736818 19 + TSS region transcription start site region 132544
Tssr132545 15 85746879 to 85746899 20 + TSS region transcription start site region 132545
Tssr132546 15 85772151 to 85772168 17 + TSS region transcription start site region 132546
Tssr132547 15 85772225 to 85772250 25 + TSS region transcription start site region 132547
Tssr4684 15 85777095 to 85777103 8 + TSS region transcription start site region 4684
Tssr132548 15 85787169 to 85787177 8 + TSS region transcription start site region 132548
Tssr135764 15 85790193 to 85790203 10 - TSS region transcription start site region 135764
Tssr132549 15 85804045 to 85804060 15 + TSS region transcription start site region 132549
Cdpf1 15 85806972 to 85811697 4725 - protein coding gene cysteine rich, DPF motif domain containing 1
Tssr135765 15 85809233 to 85809245 12 - TSS region transcription start site region 135765
Cpgi7492 15 85811051 to 85811996 945 CpG island CpG island 7492
Tssr135766 15 85811239 to 85811248 9 - TSS region transcription start site region 135766
Tssr132550 15 85811299 to 85811318 19 + TSS region transcription start site region 132550
Tssr132551 15 85811323 to 85811334 11 + TSS region transcription start site region 132551
Tssr132552 15 85811348 to 85811353 5 + TSS region transcription start site region 132552
Tssr135767 15 85811617 to 85811628 11 - TSS region transcription start site region 135767
Tssr135768 15 85811663 to 85811705 42 - TSS region transcription start site region 135768
Pkdrej 15 85814676 to 85821733 7057 - protein coding gene polycystin (PKD) family receptor for egg jelly
Cpgi7493 15 85821107 to 85822142 1035 CpG island CpG island 7493
Tssr135769 15 85821472 to 85821514 42 - TSS region transcription start site region 135769
Tssr135770 15 85821787 to 85821801 14 - TSS region transcription start site region 135770
Cpgi7494 15 85832066 to 85832622 556 CpG island CpG island 7494
Tssr132553 15 85832301 to 85832317 16 + TSS region transcription start site region 132553
Ttc38 15 85832306 to 85858822 26516 + protein coding gene tetratricopeptide repeat domain 38
Tssr132554 15 85832319 to 85832351 32 + TSS region transcription start site region 132554
Cpgi7495 15 85851193 to 85851373 180 CpG island CpG island 7495
Cpgi7496 15 85859414 to 85860116 702 CpG island CpG island 7496
Tssr132555 15 85859656 to 85859679 23 + TSS region transcription start site region 132555
Tssr132556 15 85859689 to 85859744 55 + TSS region transcription start site region 132556
Gtse1 15 85859745 to 85876573 16828 + protein coding gene G two S phase expressed protein 1
Tssr132557 15 85859752 to 85859775 23 + TSS region transcription start site region 132557
Tssr132558 15 85859961 to 85860013 52 + TSS region transcription start site region 132558
Tssr132559 15 85860014 to 85860057 43 + TSS region transcription start site region 132559
Gm49548 15 85877647 to 85879090 1443 - bidirectional promoter lncRNA gene predicted gene, 49548
Cpgi7497 15 85878670 to 85879822 1152 CpG island CpG island 7497
Tssr132560 15 85879306 to 85879372 66 + TSS region transcription start site region 132560
Trmu 15 85879312 to 85897394 18082 + protein coding gene tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
4833417J16Rik 15 85886110 to 85887237 1127 unclassified gene RIKEN cDNA 4833417J16 gene
Celsr1 15 85898929 to 86033777 134848 - protein coding gene cadherin, EGF LAG seven-pass G-type receptor 1
Tssr135771 15 85963517 to 85963523 6 - TSS region transcription start site region 135771
Tssr132561 15 86004298 to 86004338 40 + TSS region transcription start site region 132561
Tssr135772 15 86004985 to 86004989 4 - TSS region transcription start site region 135772
Tssr135773 15 86019797 to 86019801 4 - TSS region transcription start site region 135773
Tssr135774 15 86021467 to 86021480 13 - TSS region transcription start site region 135774
Tssr135775 15 86029961 to 86029994 33 - TSS region transcription start site region 135775
Cpgi7498 15 86031951 to 86035004 3053 CpG island CpG island 7498
Tssr135776 15 86034016 to 86034027 11 - TSS region transcription start site region 135776
Tssr135777 15 86034043 to 86034106 63 - TSS region transcription start site region 135777
Tssr135778 15 86034177 to 86034208 31 - TSS region transcription start site region 135778
Gm34764 15 86034250 to 86040244 5994 + lncRNA gene predicted gene, 34764
Tssr132562 15 86036503 to 86036511 8 + TSS region transcription start site region 132562
Tssr135779 15 86051280 to 86051305 25 - TSS region transcription start site region 135779
Gm41375 15 86053567 to 86058620 5053 - lncRNA gene predicted gene, 41375
Gramd4 15 86057695 to 86137634 79939 + protein coding gene GRAM domain containing 4
Cpgi7499 15 86057951 to 86059582 1631 CpG island CpG island 7499
Tssr135780 15 86058575 to 86058591 16 - TSS region transcription start site region 135780
Tssr132563 15 86058746 to 86058793 47 + TSS region transcription start site region 132563
Tssr132564 15 86058796 to 86058851 55 + TSS region transcription start site region 132564
Tssr135781 15 86067458 to 86067484 26 - TSS region transcription start site region 135781
Tssr132565 15 86067706 to 86067744 38 + TSS region transcription start site region 132565
Tssr132566 15 86067816 to 86067853 37 + TSS region transcription start site region 132566
Tssr132567 15 86074791 to 86074810 19 + TSS region transcription start site region 132567
Gm15722 15 86087640 to 86090060 2420 - antisense lncRNA gene predicted gene 15722
Cpgi7500 15 86135480 to 86135632 152 CpG island CpG island 7500
Cerk 15 86139128 to 86186141 47013 - protein coding gene ceramide kinase
Tssr135782 15 86141348 to 86141386 38 - TSS region transcription start site region 135782
Gm24011 15 86149584 to 86149851 267 + unclassified non-coding RNA gene predicted gene, 24011
Tssr135783 15 86150565 to 86150570 5 - TSS region transcription start site region 135783
Tssr135784 15 86160426 to 86160437 11 - TSS region transcription start site region 135784
Tssr135785 15 86160526 to 86160542 16 - TSS region transcription start site region 135785
Cpgi7501 15 86164879 to 86165159 280 CpG island CpG island 7501
Tssr135786 15 86168245 to 86168269 24 - TSS region transcription start site region 135786
Tssr132568 15 86168467 to 86168510 43 + TSS region transcription start site region 132568
Tssr135787 15 86169829 to 86169842 13 - TSS region transcription start site region 135787
Tssr132569 15 86169931 to 86169954 23 + TSS region transcription start site region 132569
Tssr132570 15 86182120 to 86182139 19 + TSS region transcription start site region 132570
Tssr132571 15 86182815 to 86182850 35 + TSS region transcription start site region 132571
Tssr132572 15 86182904 to 86182916 12 + TSS region transcription start site region 132572
Cpgi7502 15 86184790 to 86186311 1521 CpG island CpG island 7502
Tssr135788 15 86185660 to 86185671 11 - TSS region transcription start site region 135788
Tssr135789 15 86185679 to 86185766 87 - TSS region transcription start site region 135789
Gm15569 15 86185728 to 86187152 1424 + antisense lncRNA gene predicted gene 15569
Tssr135790 15 86185862 to 86185937 75 - TSS region transcription start site region 135790
Tssr135791 15 86186002 to 86186027 25 - TSS region transcription start site region 135791
Tssr135792 15 86186032 to 86186057 25 - TSS region transcription start site region 135792
Tssr135793 15 86186136 to 86186185 49 - TSS region transcription start site region 135793
Tssr135794 15 86186313 to 86186354 41 - TSS region transcription start site region 135794
Tssr135795 15 86186919 to 86186926 7 - TSS region transcription start site region 135795
Cpgi7503 15 86194723 to 86194875 152 CpG island CpG island 7503
Tssr132573 15 86194736 to 86194773 37 + TSS region transcription start site region 132573
Tssr132574 15 86194822 to 86194854 32 + TSS region transcription start site region 132574
Tssr132575 15 86194876 to 86194895 19 + TSS region transcription start site region 132575
Tssr132576 15 86194898 to 86194909 11 + TSS region transcription start site region 132576
Tssr132577 15 86195091 to 86195116 25 + TSS region transcription start site region 132577
Tssr135796 15 86202696 to 86202722 26 - TSS region transcription start site region 135796
Tssr132578 15 86202818 to 86202834 16 + TSS region transcription start site region 132578
Cpgi7504 15 86204429 to 86204675 246 CpG island CpG island 7504
Gm22818 15 86212554 to 86212657 103 - snRNA gene predicted gene, 22818
2810001A02Rik 15 86213735 to 86214388 653 unclassified non-coding RNA gene RIKEN cDNA 2810001A02 gene
Cpgi7505 15 86213799 to 86215073 1274 CpG island CpG island 7505
Tssr135797 15 86214286 to 86214297 11 - TSS region transcription start site region 135797
Tssr135798 15 86214306 to 86214325 19 - TSS region transcription start site region 135798
Tssr135799 15 86214335 to 86214395 60 - TSS region transcription start site region 135799
Tssr132579 15 86214431 to 86214455 24 + TSS region transcription start site region 132579
Tbc1d22a 15 86214459 to 86498503 284044 + protein coding gene TBC1 domain family, member 22a
Tssr132580 15 86214461 to 86214472 11 + TSS region transcription start site region 132580
Tssr135800 15 86222040 to 86222047 7 - TSS region transcription start site region 135800
Tssr4685 15 86234707 to 86234728 21 + TSS region transcription start site region 4685
Tssr132581 15 86234872 to 86234885 13 + TSS region transcription start site region 132581
Tssr132582 15 86277636 to 86277682 46 + TSS region transcription start site region 132582
Tssr132583 15 86325229 to 86325250 21 + TSS region transcription start site region 132583
Tssr132584 15 86326005 to 86326014 9 + TSS region transcription start site region 132584
Tssr132585 15 86333772 to 86333784 12 + TSS region transcription start site region 132585
Tssr132586 15 86333832 to 86333844 12 + TSS region transcription start site region 132586
Tssr132587 15 86334472 to 86334486 14 + TSS region transcription start site region 132587
Tssr132588 15 86334976 to 86335013 37 + TSS region transcription start site region 132588
D15Ertd320e 15 86354318 to 86354521 203 DNA segment DNA segment, Chr 15, ERATO Doi 320, expressed
Tssr135801 15 86365097 to 86365101 4 - TSS region transcription start site region 135801
Tssr132589 15 86415434 to 86415438 4 + TSS region transcription start site region 132589
Tssr132590 15 86436100 to 86436107 7 + TSS region transcription start site region 132590
A930001M01Rik 15 86453352 to 86475098 21746 - antisense lncRNA gene RIKEN cDNA A930001M01 gene
Tssr132591 15 86468999 to 86469000 1 + TSS region transcription start site region 132591
Tssr135802 15 86475091 to 86475108 17 - TSS region transcription start site region 135802
Tssr135803 15 86574448 to 86574457 9 - TSS region transcription start site region 135803
Tssr135804 15 86574491 to 86574499 8 - TSS region transcription start site region 135804
D15Mit37 15 86597220 to 86597367 147 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 37
Gm34965 15 86604929 to 86605632 703 + lncRNA gene predicted gene, 34965
Gm35118 15 86692414 to 86705167 12753 - lncRNA gene predicted gene, 35118
Tssr132592 15 86704160 to 86704174 14 + TSS region transcription start site region 132592
Gm49464 15 86704291 to 86711545 7254 + lincRNA gene predicted gene, 49464
Tssr135805 15 86706411 to 86706424 13 - TSS region transcription start site region 135805
Tssr135806 15 86706436 to 86706447 11 - TSS region transcription start site region 135806
Gm49465 15 86726495 to 86726759 264 + pseudogene predicted gene, 49465
4930543I03Rik 15 86737826 to 86766140 28314 + lincRNA gene RIKEN cDNA 4930543I03 gene
Gm35284 15 86902013 to 86904459 2446 + lncRNA gene predicted gene, 35284
Gm49466 15 86923637 to 86924082 445 - lincRNA gene predicted gene, 49466
Gm49467 15 86939107 to 86939496 389 + pseudogene predicted gene, 49467
Gm49468 15 86990519 to 86991308 789 + lincRNA gene predicted gene, 49468
Gm23416 15 87068993 to 87069087 94 + miRNA gene predicted gene, 23416
Gm49469 15 87097532 to 87100177 2645 + lincRNA gene predicted gene, 49469
Gm49470 15 87139086 to 87179926 40840 + lincRNA gene predicted gene, 49470
n-R5s42 15 87169113 to 87169216 103 + rRNA gene nuclear encoded rRNA 5S 42
D15Mit241 15 87170085 to 87170187 102 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 241
A930027H12Rik 15 87243840 to 87253979 10139 + lincRNA gene RIKEN cDNA A930027H12 gene
D15Mit216 15 87276743 to 87276914 171 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 216
D15Mit262 15 87280611 to 87280733 122 DNA segment DNA Segment, Chr 15 Massachusetts Institute of Technology 262
Tssr132593 15 87327231 to 87327233 2 + TSS region transcription start site region 132593
Tssr4686 15 87342063 to 87342066 3 + TSS region transcription start site region 4686
Gm35422 15 87454022 to 87469667 15645 - lncRNA gene predicted gene, 35422
D15Mit96 15 87461452 to 87461591 139 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 96
Sluc26 15 87461452 to 87461591 139 QTL susceptibility to lung cancer 26
Dbsty4 15 87465070 to 87465215 145 QTL diabesity 4
Pitm4 15 87465070 to 87465215 145 QTL prion incubation time 4
D15Mit159 15 87465070 to 87465215 145 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 159
Alprf 15 87465070 to 90390365 2925295 QTL alcohol preference
Gm35471 15 87529906 to 87543945 14039 - lncRNA gene predicted gene, 35471
Cpgi7506 15 87543611 to 87545316 1705 CpG island CpG island 7506
Tssr132594 15 87544188 to 87544262 74 + TSS region transcription start site region 132594
Tssr132595 15 87544286 to 87544304 18 + TSS region transcription start site region 132595
Tafa5 15 87544299 to 87759364 215065 + protein coding gene TAFA chemokine like family member 5
Cpgi7507 15 87623650 to 87626040 2390 CpG island CpG island 7507
Tssr132596 15 87624258 to 87624291 33 + TSS region transcription start site region 132596
Tssr132597 15 87624296 to 87624309 13 + TSS region transcription start site region 132597
Tssr132598 15 87625098 to 87625106 8 + TSS region transcription start site region 132598
Tssr132599 15 87625214 to 87625230 16 + TSS region transcription start site region 132599
Tssr132600 15 87625245 to 87625261 16 + TSS region transcription start site region 132600
Tssr132601 15 87632077 to 87632085 8 + TSS region transcription start site region 132601
Tssr132602 15 87652039 to 87652049 10 + TSS region transcription start site region 132602
Tssr132603 15 87654936 to 87654945 9 + TSS region transcription start site region 132603
Tssr132604 15 87654972 to 87654981 9 + TSS region transcription start site region 132604
Tssr132605 15 87655003 to 87655019 16 + TSS region transcription start site region 132605
Tssr132606 15 87655028 to 87655035 7 + TSS region transcription start site region 132606