Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:85423773-85987524

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106 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atxn10 15 85336245 to 85463212 126967 + protein coding gene ataxin 10
Tssr132518 15 85462125 to 85462170 45 + TSS region transcription start site region 132518
Tssr132519 15 85462740 to 85462741 1 + TSS region transcription start site region 132519
7530416G11Rik 15 85492736 to 85503227 10491 - protein coding gene RIKEN cDNA 7530416G11 gene
Tssr132520 15 85503905 to 85503923 18 + TSS region transcription start site region 132520
Cpgi7478 15 85507635 to 85507814 179 CpG island CpG island 7478
Gm4825 15 85510812 to 85511219 407 + pseudogene predicted pseudogene 4825
Wnt7b 15 85535437 to 85581821 46384 - protein coding gene wingless-type MMTV integration site family, member 7B
Cpgi7479 15 85537199 to 85537836 637 CpG island CpG island 7479
Cpgi7480 15 85558911 to 85559070 159 CpG island CpG island 7480
Gm34394 15 85565767 to 85580244 14477 + lncRNA gene predicted gene, 34394
Cpgi7481 15 85576220 to 85578353 2133 CpG island CpG island 7481
Tssr135755 15 85577869 to 85577902 33 - TSS region transcription start site region 135755
Tssr135756 15 85578119 to 85578132 13 - TSS region transcription start site region 135756
Tssr135757 15 85578136 to 85578154 18 - TSS region transcription start site region 135757
Cpgi7482 15 85580111 to 85582538 2427 CpG island CpG island 7482
Tssr4682 15 85580145 to 85580150 5 + TSS region transcription start site region 4682
Tssr132521 15 85580178 to 85580190 12 + TSS region transcription start site region 132521
AU022754 15 85581142 to 85593708 12566 + antisense lncRNA gene expressed sequence AU022754
Tssr135758 15 85581809 to 85581820 11 - TSS region transcription start site region 135758
Tssr4683 15 85581825 to 85581832 7 - TSS region transcription start site region 4683
Tssr135759 15 85581836 to 85581913 77 - TSS region transcription start site region 135759
Tssr135760 15 85581927 to 85581949 22 - TSS region transcription start site region 135760
Cpgi7483 15 85615031 to 85615871 840 CpG island CpG island 7483
Cpgi7484 15 85625467 to 85626578 1111 CpG island CpG island 7484
Cpgi7485 15 85634366 to 85635178 812 CpG island CpG island 7485
Tssr132522 15 85634842 to 85634857 15 + TSS region transcription start site region 132522
Tssr132523 15 85634865 to 85634891 26 + TSS region transcription start site region 132523
Tssr132524 15 85634906 to 85634920 14 + TSS region transcription start site region 132524
Tssr132525 15 85645689 to 85645713 24 + TSS region transcription start site region 132525
Cpgi7486 15 85645975 to 85646327 352 CpG island CpG island 7486
Tssr132526 15 85646079 to 85646127 48 + TSS region transcription start site region 132526
Gm49539 15 85646083 to 85667675 21592 + lincRNA gene predicted gene, 49539
Cpgi7487 15 85653442 to 85653922 480 CpG island CpG island 7487
Tssr132527 15 85653550 to 85653604 54 + TSS region transcription start site region 132527
Tssr135761 15 85653878 to 85653912 34 - TSS region transcription start site region 135761
Tssr132528 15 85654697 to 85654699 2 + TSS region transcription start site region 132528
Cpgi7488 15 85660727 to 85661097 370 CpG island CpG island 7488
Cpgi7489 15 85669817 to 85672350 2533 CpG island CpG island 7489
Tssr132529 15 85670993 to 85671019 26 + TSS region transcription start site region 132529
Tssr132530 15 85671260 to 85671279 19 + TSS region transcription start site region 132530
Tssr132531 15 85671474 to 85671511 37 + TSS region transcription start site region 132531
Tssr132532 15 85671519 to 85671533 14 + TSS region transcription start site region 132532
Tssr132533 15 85671809 to 85671816 7 + TSS region transcription start site region 132533
Tssr132534 15 85671825 to 85671837 12 + TSS region transcription start site region 132534
A130088B03Rik 15 85676741 to 85680834 4093 unclassified gene RIKEN cDNA A130088B03 gene
Cpgi7490 15 85678435 to 85678605 170 CpG island CpG island 7490
Tssr132535 15 85679461 to 85679486 25 + TSS region transcription start site region 132535
Lncppara 15 85703773 to 85707524 3751 + lncRNA gene long noncoding RNA near Ppara
Tssr135762 15 85703982 to 85703984 2 - TSS region transcription start site region 135762
Mirc31 15 85706603 to 85707403 800 complex/cluster/region microRNA cluster 31, including Mirlet7c-2 through Mirlet7b
Mirlet7c-2 15 85706603 to 85706697 94 + miRNA gene microRNA let7c-2
Mirlet7b 15 85707319 to 85707403 84 + miRNA gene microRNA let7b
Gm34622 15 85708844 to 85713345 4501 - lncRNA gene predicted gene, 34622
Tssr135763 15 85711605 to 85711612 7 - TSS region transcription start site region 135763
Tssr132536 15 85723825 to 85723849 24 + TSS region transcription start site region 132536
Gm46529 15 85723850 to 85730541 6691 + lncRNA gene predicted gene, 46529
Cpgi7491 15 85734485 to 85736402 1917 CpG island CpG island 7491
Tssr132537 15 85734908 to 85734925 17 + TSS region transcription start site region 132537
Ppara 15 85734983 to 85802819 67836 + protein coding gene peroxisome proliferator activated receptor alpha
Tssr132538 15 85735584 to 85735615 31 + TSS region transcription start site region 132538
Tssr132539 15 85735621 to 85735650 29 + TSS region transcription start site region 132539
Tssr132540 15 85735754 to 85735808 54 + TSS region transcription start site region 132540
Tssr132541 15 85735811 to 85735823 12 + TSS region transcription start site region 132541
Tssr132542 15 85736107 to 85736122 15 + TSS region transcription start site region 132542
Tssr132543 15 85736341 to 85736352 11 + TSS region transcription start site region 132543
Tssr132544 15 85736799 to 85736818 19 + TSS region transcription start site region 132544
Tssr132545 15 85746879 to 85746899 20 + TSS region transcription start site region 132545
Tssr132546 15 85772151 to 85772168 17 + TSS region transcription start site region 132546
Tssr132547 15 85772225 to 85772250 25 + TSS region transcription start site region 132547
Tssr4684 15 85777095 to 85777103 8 + TSS region transcription start site region 4684
Tssr132548 15 85787169 to 85787177 8 + TSS region transcription start site region 132548
Tssr135764 15 85790193 to 85790203 10 - TSS region transcription start site region 135764
Tssr132549 15 85804045 to 85804060 15 + TSS region transcription start site region 132549
Cdpf1 15 85806972 to 85811697 4725 - protein coding gene cysteine rich, DPF motif domain containing 1
Tssr135765 15 85809233 to 85809245 12 - TSS region transcription start site region 135765
Cpgi7492 15 85811051 to 85811996 945 CpG island CpG island 7492
Tssr135766 15 85811239 to 85811248 9 - TSS region transcription start site region 135766
Tssr132550 15 85811299 to 85811318 19 + TSS region transcription start site region 132550
Tssr132551 15 85811323 to 85811334 11 + TSS region transcription start site region 132551
Tssr132552 15 85811348 to 85811353 5 + TSS region transcription start site region 132552
Tssr135767 15 85811617 to 85811628 11 - TSS region transcription start site region 135767
Tssr135768 15 85811663 to 85811705 42 - TSS region transcription start site region 135768
Pkdrej 15 85814676 to 85821733 7057 - protein coding gene polycystin (PKD) family receptor for egg jelly
Cpgi7493 15 85821107 to 85822142 1035 CpG island CpG island 7493
Tssr135769 15 85821472 to 85821514 42 - TSS region transcription start site region 135769
Tssr135770 15 85821787 to 85821801 14 - TSS region transcription start site region 135770
Cpgi7494 15 85832066 to 85832622 556 CpG island CpG island 7494
Tssr132553 15 85832301 to 85832317 16 + TSS region transcription start site region 132553
Ttc38 15 85832306 to 85858822 26516 + protein coding gene tetratricopeptide repeat domain 38
Tssr132554 15 85832319 to 85832351 32 + TSS region transcription start site region 132554
Cpgi7495 15 85851193 to 85851373 180 CpG island CpG island 7495
Cpgi7496 15 85859414 to 85860116 702 CpG island CpG island 7496
Tssr132555 15 85859656 to 85859679 23 + TSS region transcription start site region 132555
Tssr132556 15 85859689 to 85859744 55 + TSS region transcription start site region 132556
Gtse1 15 85859745 to 85876573 16828 + protein coding gene G two S phase expressed protein 1
Tssr132557 15 85859752 to 85859775 23 + TSS region transcription start site region 132557
Tssr132558 15 85859961 to 85860013 52 + TSS region transcription start site region 132558
Tssr132559 15 85860014 to 85860057 43 + TSS region transcription start site region 132559
Gm49548 15 85877647 to 85879090 1443 - bidirectional promoter lncRNA gene predicted gene, 49548
Cpgi7497 15 85878670 to 85879822 1152 CpG island CpG island 7497
Tssr132560 15 85879306 to 85879372 66 + TSS region transcription start site region 132560
Trmu 15 85879312 to 85897394 18082 + protein coding gene tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
4833417J16Rik 15 85886110 to 85887237 1127 unclassified gene RIKEN cDNA 4833417J16 gene
Celsr1 15 85898929 to 86033777 134848 - protein coding gene cadherin, EGF LAG seven-pass G-type receptor 1
Tssr135771 15 85963517 to 85963523 6 - TSS region transcription start site region 135771