Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:85144086-89174926

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425 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pitm5 15 83079860 to 87170187 4090327 QTL prion incubation time 5
Ribc2 15 85132078 to 85144570 12492 + protein coding gene RIB43A domain with coiled-coils 2
Gm19277 15 85149254 to 85156132 6878 - lincRNA gene predicted gene, 19277
Tssr135752 15 85156126 to 85156137 11 - TSS region transcription start site region 135752
Tssr132497 15 85177739 to 85177762 23 + TSS region transcription start site region 132497
Cpgi7476 15 85205778 to 85206505 727 CpG island CpG island 7476
Fbln1 15 85205942 to 85286294 80352 + protein coding gene fibulin 1
Tssr132498 15 85206022 to 85206045 23 + TSS region transcription start site region 132498
Tssr132499 15 85206046 to 85206072 26 + TSS region transcription start site region 132499
Tssr132500 15 85228859 to 85228873 14 + TSS region transcription start site region 132500
Tssr132501 15 85231478 to 85231496 18 + TSS region transcription start site region 132501
Tssr132502 15 85232554 to 85232580 26 + TSS region transcription start site region 132502
Tssr132503 15 85238500 to 85238529 29 + TSS region transcription start site region 132503
Tssr132504 15 85239319 to 85239330 11 + TSS region transcription start site region 132504
Tssr132505 15 85242034 to 85242049 15 + TSS region transcription start site region 132505
Gm34337 15 85311581 to 85314180 2599 - lncRNA gene predicted gene, 34337
Tssr132506 15 85329369 to 85329382 13 + TSS region transcription start site region 132506
Tssr135753 15 85332631 to 85332638 7 - TSS region transcription start site region 135753
Cpgi7477 15 85336004 to 85337041 1037 CpG island CpG island 7477
Tssr132507 15 85336221 to 85336232 11 + TSS region transcription start site region 132507
Tssr132508 15 85336237 to 85336278 41 + TSS region transcription start site region 132508
Atxn10 15 85336245 to 85463212 126967 + protein coding gene ataxin 10
Tssr132509 15 85336287 to 85336303 16 + TSS region transcription start site region 132509
Tssr132510 15 85336337 to 85336344 7 + TSS region transcription start site region 132510
Tssr132511 15 85336350 to 85336387 37 + TSS region transcription start site region 132511
Tssr132512 15 85336401 to 85336417 16 + TSS region transcription start site region 132512
Tssr132513 15 85336444 to 85336460 16 + TSS region transcription start site region 132513
Gm23517 15 85351063 to 85351254 191 - snRNA gene predicted gene, 23517
Tssr4681 15 85354250 to 85354252 2 - TSS region transcription start site region 4681
Tssr132514 15 85354318 to 85354320 2 + TSS region transcription start site region 132514
Tssr132515 15 85393434 to 85393450 16 + TSS region transcription start site region 132515
Tssr132516 15 85402096 to 85402121 25 + TSS region transcription start site region 132516
Tssr135754 15 85409192 to 85409218 26 - TSS region transcription start site region 135754
A930031G03Rik 15 85417985 to 85418943 958 unclassified gene RIKEN cDNA A930031G03 gene
Tssr132517 15 85418120 to 85418125 5 + TSS region transcription start site region 132517
Tssr132518 15 85462125 to 85462170 45 + TSS region transcription start site region 132518
Tssr132519 15 85462740 to 85462741 1 + TSS region transcription start site region 132519
7530416G11Rik 15 85492736 to 85503227 10491 - protein coding gene RIKEN cDNA 7530416G11 gene
Tssr132520 15 85503905 to 85503923 18 + TSS region transcription start site region 132520
Cpgi7478 15 85507635 to 85507814 179 CpG island CpG island 7478
Gm4825 15 85510812 to 85511219 407 + pseudogene predicted pseudogene 4825
Wnt7b 15 85535437 to 85581821 46384 - protein coding gene wingless-type MMTV integration site family, member 7B
Cpgi7479 15 85537199 to 85537836 637 CpG island CpG island 7479
Cpgi7480 15 85558911 to 85559070 159 CpG island CpG island 7480
Gm34394 15 85565767 to 85580244 14477 + lncRNA gene predicted gene, 34394
Cpgi7481 15 85576220 to 85578353 2133 CpG island CpG island 7481
Tssr135755 15 85577869 to 85577902 33 - TSS region transcription start site region 135755
Tssr135756 15 85578119 to 85578132 13 - TSS region transcription start site region 135756
Tssr135757 15 85578136 to 85578154 18 - TSS region transcription start site region 135757
Cpgi7482 15 85580111 to 85582538 2427 CpG island CpG island 7482
Tssr4682 15 85580145 to 85580150 5 + TSS region transcription start site region 4682
Tssr132521 15 85580178 to 85580190 12 + TSS region transcription start site region 132521
AU022754 15 85581142 to 85593708 12566 + antisense lncRNA gene expressed sequence AU022754
Tssr135758 15 85581809 to 85581820 11 - TSS region transcription start site region 135758
Tssr4683 15 85581825 to 85581832 7 - TSS region transcription start site region 4683
Tssr135759 15 85581836 to 85581913 77 - TSS region transcription start site region 135759
Tssr135760 15 85581927 to 85581949 22 - TSS region transcription start site region 135760
Cpgi7483 15 85615031 to 85615871 840 CpG island CpG island 7483
Cpgi7484 15 85625467 to 85626578 1111 CpG island CpG island 7484
Cpgi7485 15 85634366 to 85635178 812 CpG island CpG island 7485
Tssr132522 15 85634842 to 85634857 15 + TSS region transcription start site region 132522
Tssr132523 15 85634865 to 85634891 26 + TSS region transcription start site region 132523
Tssr132524 15 85634906 to 85634920 14 + TSS region transcription start site region 132524
Tssr132525 15 85645689 to 85645713 24 + TSS region transcription start site region 132525
Cpgi7486 15 85645975 to 85646327 352 CpG island CpG island 7486
Tssr132526 15 85646079 to 85646127 48 + TSS region transcription start site region 132526
Gm49539 15 85646083 to 85667675 21592 + lincRNA gene predicted gene, 49539
Cpgi7487 15 85653442 to 85653922 480 CpG island CpG island 7487
Tssr132527 15 85653550 to 85653604 54 + TSS region transcription start site region 132527
Tssr135761 15 85653878 to 85653912 34 - TSS region transcription start site region 135761
Tssr132528 15 85654697 to 85654699 2 + TSS region transcription start site region 132528
Cpgi7488 15 85660727 to 85661097 370 CpG island CpG island 7488
Cpgi7489 15 85669817 to 85672350 2533 CpG island CpG island 7489
Tssr132529 15 85670993 to 85671019 26 + TSS region transcription start site region 132529
Tssr132530 15 85671260 to 85671279 19 + TSS region transcription start site region 132530
Tssr132531 15 85671474 to 85671511 37 + TSS region transcription start site region 132531
Tssr132532 15 85671519 to 85671533 14 + TSS region transcription start site region 132532
Tssr132533 15 85671809 to 85671816 7 + TSS region transcription start site region 132533
Tssr132534 15 85671825 to 85671837 12 + TSS region transcription start site region 132534
A130088B03Rik 15 85676741 to 85680834 4093 unclassified gene RIKEN cDNA A130088B03 gene
Cpgi7490 15 85678435 to 85678605 170 CpG island CpG island 7490
Tssr132535 15 85679461 to 85679486 25 + TSS region transcription start site region 132535
Lncppara 15 85703773 to 85707524 3751 + lncRNA gene long noncoding RNA near Ppara
Tssr135762 15 85703982 to 85703984 2 - TSS region transcription start site region 135762
Mirc31 15 85706603 to 85707403 800 complex/cluster/region microRNA cluster 31, including Mirlet7c-2 through Mirlet7b
Mirlet7c-2 15 85706603 to 85706697 94 + miRNA gene microRNA let7c-2
Mirlet7b 15 85707319 to 85707403 84 + miRNA gene microRNA let7b
Gm34622 15 85708844 to 85713345 4501 - lncRNA gene predicted gene, 34622
Tssr135763 15 85711605 to 85711612 7 - TSS region transcription start site region 135763
Tssr132536 15 85723825 to 85723849 24 + TSS region transcription start site region 132536
Gm46529 15 85723850 to 85730541 6691 + lncRNA gene predicted gene, 46529
Cpgi7491 15 85734485 to 85736402 1917 CpG island CpG island 7491
Tssr132537 15 85734908 to 85734925 17 + TSS region transcription start site region 132537
Ppara 15 85734983 to 85802819 67836 + protein coding gene peroxisome proliferator activated receptor alpha
Tssr132538 15 85735584 to 85735615 31 + TSS region transcription start site region 132538
Tssr132539 15 85735621 to 85735650 29 + TSS region transcription start site region 132539
Tssr132540 15 85735754 to 85735808 54 + TSS region transcription start site region 132540
Tssr132541 15 85735811 to 85735823 12 + TSS region transcription start site region 132541
Tssr132542 15 85736107 to 85736122 15 + TSS region transcription start site region 132542
Tssr132543 15 85736341 to 85736352 11 + TSS region transcription start site region 132543
Tssr132544 15 85736799 to 85736818 19 + TSS region transcription start site region 132544
Tssr132545 15 85746879 to 85746899 20 + TSS region transcription start site region 132545
Tssr132546 15 85772151 to 85772168 17 + TSS region transcription start site region 132546
Tssr132547 15 85772225 to 85772250 25 + TSS region transcription start site region 132547
Tssr4684 15 85777095 to 85777103 8 + TSS region transcription start site region 4684
Tssr132548 15 85787169 to 85787177 8 + TSS region transcription start site region 132548
Tssr135764 15 85790193 to 85790203 10 - TSS region transcription start site region 135764
Tssr132549 15 85804045 to 85804060 15 + TSS region transcription start site region 132549
Cdpf1 15 85806972 to 85811697 4725 - protein coding gene cysteine rich, DPF motif domain containing 1
Tssr135765 15 85809233 to 85809245 12 - TSS region transcription start site region 135765
Cpgi7492 15 85811051 to 85811996 945 CpG island CpG island 7492
Tssr135766 15 85811239 to 85811248 9 - TSS region transcription start site region 135766
Tssr132550 15 85811299 to 85811318 19 + TSS region transcription start site region 132550
Tssr132551 15 85811323 to 85811334 11 + TSS region transcription start site region 132551
Tssr132552 15 85811348 to 85811353 5 + TSS region transcription start site region 132552
Tssr135767 15 85811617 to 85811628 11 - TSS region transcription start site region 135767
Tssr135768 15 85811663 to 85811705 42 - TSS region transcription start site region 135768
Pkdrej 15 85814676 to 85821733 7057 - protein coding gene polycystin (PKD) family receptor for egg jelly
Cpgi7493 15 85821107 to 85822142 1035 CpG island CpG island 7493
Tssr135769 15 85821472 to 85821514 42 - TSS region transcription start site region 135769
Tssr135770 15 85821787 to 85821801 14 - TSS region transcription start site region 135770
Cpgi7494 15 85832066 to 85832622 556 CpG island CpG island 7494
Tssr132553 15 85832301 to 85832317 16 + TSS region transcription start site region 132553
Ttc38 15 85832306 to 85858822 26516 + protein coding gene tetratricopeptide repeat domain 38
Tssr132554 15 85832319 to 85832351 32 + TSS region transcription start site region 132554
Cpgi7495 15 85851193 to 85851373 180 CpG island CpG island 7495
Cpgi7496 15 85859414 to 85860116 702 CpG island CpG island 7496
Tssr132555 15 85859656 to 85859679 23 + TSS region transcription start site region 132555
Tssr132556 15 85859689 to 85859744 55 + TSS region transcription start site region 132556
Gtse1 15 85859745 to 85876573 16828 + protein coding gene G two S phase expressed protein 1
Tssr132557 15 85859752 to 85859775 23 + TSS region transcription start site region 132557
Tssr132558 15 85859961 to 85860013 52 + TSS region transcription start site region 132558
Tssr132559 15 85860014 to 85860057 43 + TSS region transcription start site region 132559
Gm49548 15 85877647 to 85879090 1443 - bidirectional promoter lncRNA gene predicted gene, 49548
Cpgi7497 15 85878670 to 85879822 1152 CpG island CpG island 7497
Tssr132560 15 85879306 to 85879372 66 + TSS region transcription start site region 132560
Trmu 15 85879312 to 85897394 18082 + protein coding gene tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
4833417J16Rik 15 85886110 to 85887237 1127 unclassified gene RIKEN cDNA 4833417J16 gene
Celsr1 15 85898929 to 86033777 134848 - protein coding gene cadherin, EGF LAG seven-pass G-type receptor 1
Tssr135771 15 85963517 to 85963523 6 - TSS region transcription start site region 135771
Tssr132561 15 86004298 to 86004338 40 + TSS region transcription start site region 132561
Tssr135772 15 86004985 to 86004989 4 - TSS region transcription start site region 135772
Tssr135773 15 86019797 to 86019801 4 - TSS region transcription start site region 135773
Tssr135774 15 86021467 to 86021480 13 - TSS region transcription start site region 135774
Tssr135775 15 86029961 to 86029994 33 - TSS region transcription start site region 135775
Cpgi7498 15 86031951 to 86035004 3053 CpG island CpG island 7498
Tssr135776 15 86034016 to 86034027 11 - TSS region transcription start site region 135776
Tssr135777 15 86034043 to 86034106 63 - TSS region transcription start site region 135777
Tssr135778 15 86034177 to 86034208 31 - TSS region transcription start site region 135778
Gm34764 15 86034250 to 86040244 5994 + lncRNA gene predicted gene, 34764
Tssr132562 15 86036503 to 86036511 8 + TSS region transcription start site region 132562
Tssr135779 15 86051280 to 86051305 25 - TSS region transcription start site region 135779
Gm41375 15 86053567 to 86058620 5053 - lncRNA gene predicted gene, 41375
Gramd4 15 86057695 to 86137634 79939 + protein coding gene GRAM domain containing 4
Cpgi7499 15 86057951 to 86059582 1631 CpG island CpG island 7499
Tssr135780 15 86058575 to 86058591 16 - TSS region transcription start site region 135780
Tssr132563 15 86058746 to 86058793 47 + TSS region transcription start site region 132563
Tssr132564 15 86058796 to 86058851 55 + TSS region transcription start site region 132564
Tssr135781 15 86067458 to 86067484 26 - TSS region transcription start site region 135781
Tssr132565 15 86067706 to 86067744 38 + TSS region transcription start site region 132565
Tssr132566 15 86067816 to 86067853 37 + TSS region transcription start site region 132566
Tssr132567 15 86074791 to 86074810 19 + TSS region transcription start site region 132567
Gm15722 15 86087640 to 86090060 2420 - antisense lncRNA gene predicted gene 15722
Cpgi7500 15 86135480 to 86135632 152 CpG island CpG island 7500
Cerk 15 86139128 to 86186141 47013 - protein coding gene ceramide kinase
Tssr135782 15 86141348 to 86141386 38 - TSS region transcription start site region 135782
Gm24011 15 86149584 to 86149851 267 + unclassified non-coding RNA gene predicted gene, 24011
Tssr135783 15 86150565 to 86150570 5 - TSS region transcription start site region 135783
Tssr135784 15 86160426 to 86160437 11 - TSS region transcription start site region 135784
Tssr135785 15 86160526 to 86160542 16 - TSS region transcription start site region 135785
Cpgi7501 15 86164879 to 86165159 280 CpG island CpG island 7501
Tssr135786 15 86168245 to 86168269 24 - TSS region transcription start site region 135786
Tssr132568 15 86168467 to 86168510 43 + TSS region transcription start site region 132568
Tssr135787 15 86169829 to 86169842 13 - TSS region transcription start site region 135787
Tssr132569 15 86169931 to 86169954 23 + TSS region transcription start site region 132569
Tssr132570 15 86182120 to 86182139 19 + TSS region transcription start site region 132570
Tssr132571 15 86182815 to 86182850 35 + TSS region transcription start site region 132571
Tssr132572 15 86182904 to 86182916 12 + TSS region transcription start site region 132572
Cpgi7502 15 86184790 to 86186311 1521 CpG island CpG island 7502
Tssr135788 15 86185660 to 86185671 11 - TSS region transcription start site region 135788
Tssr135789 15 86185679 to 86185766 87 - TSS region transcription start site region 135789
Gm15569 15 86185728 to 86187152 1424 + antisense lncRNA gene predicted gene 15569
Tssr135790 15 86185862 to 86185937 75 - TSS region transcription start site region 135790
Tssr135791 15 86186002 to 86186027 25 - TSS region transcription start site region 135791
Tssr135792 15 86186032 to 86186057 25 - TSS region transcription start site region 135792
Tssr135793 15 86186136 to 86186185 49 - TSS region transcription start site region 135793
Tssr135794 15 86186313 to 86186354 41 - TSS region transcription start site region 135794
Tssr135795 15 86186919 to 86186926 7 - TSS region transcription start site region 135795
Cpgi7503 15 86194723 to 86194875 152 CpG island CpG island 7503
Tssr132573 15 86194736 to 86194773 37 + TSS region transcription start site region 132573
Tssr132574 15 86194822 to 86194854 32 + TSS region transcription start site region 132574
Tssr132575 15 86194876 to 86194895 19 + TSS region transcription start site region 132575
Tssr132576 15 86194898 to 86194909 11 + TSS region transcription start site region 132576
Tssr132577 15 86195091 to 86195116 25 + TSS region transcription start site region 132577
Tssr135796 15 86202696 to 86202722 26 - TSS region transcription start site region 135796
Tssr132578 15 86202818 to 86202834 16 + TSS region transcription start site region 132578
Cpgi7504 15 86204429 to 86204675 246 CpG island CpG island 7504
Gm22818 15 86212554 to 86212657 103 - snRNA gene predicted gene, 22818
2810001A02Rik 15 86213735 to 86214388 653 unclassified non-coding RNA gene RIKEN cDNA 2810001A02 gene
Cpgi7505 15 86213799 to 86215073 1274 CpG island CpG island 7505