Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:84951350-85721387

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132 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
5031439G07Rik 15 84945720 to 84987971 42251 - protein coding gene RIKEN cDNA 5031439G07 gene
Mir1249 15 84951526 to 84951623 97 - miRNA gene microRNA 1249
Tssr135740 15 84960943 to 84960971 28 - TSS region transcription start site region 135740
Tssr135741 15 84960978 to 84960994 16 - TSS region transcription start site region 135741
Cpgi7471 15 84987072 to 84988425 1353 CpG island CpG island 7471
Tssr4677 15 84987847 to 84987850 3 - TSS region transcription start site region 4677
Tssr4678 15 84987854 to 84987857 3 - TSS region transcription start site region 4678
Tssr135742 15 84987958 to 84988018 60 - TSS region transcription start site region 135742
Tssr132483 15 84987963 to 84987987 24 + TSS region transcription start site region 132483
Tssr135743 15 84988022 to 84988031 9 - TSS region transcription start site region 135743
Gm39558 15 84988035 to 85006203 18168 + lncRNA gene predicted gene, 39558
Cpgi7472 15 85001445 to 85001678 233 CpG island CpG island 7472
Tssr132484 15 85008066 to 85008067 1 + TSS region transcription start site region 132484
Gm6847 15 85008139 to 85009000 861 + pseudogene predicted gene 6847
Gm49523 15 85015797 to 85016424 627 - pseudogene predicted gene, 49523
Cpgi7473 15 85017099 to 85017282 183 CpG island CpG island 7473
Tssr4679 15 85017133 to 85017134 1 + TSS region transcription start site region 4679
Tssr132485 15 85017138 to 85017141 3 + TSS region transcription start site region 132485
Upk3a 15 85017141 to 85022547 5406 + protein coding gene uroplakin 3A
Tssr132486 15 85017163 to 85017200 37 + TSS region transcription start site region 132486
Tssr132487 15 85017207 to 85017212 5 + TSS region transcription start site region 132487
Tssr132488 15 85028944 to 85028958 14 + TSS region transcription start site region 132488
Fam118a 15 85028948 to 85062830 33882 + protein coding gene family with sequence similarity 118, member A
Cpgi7474 15 85036487 to 85037767 1280 CpG island CpG island 7474
Tssr135744 15 85036878 to 85036892 14 - TSS region transcription start site region 135744
Tssr135745 15 85036923 to 85036944 21 - TSS region transcription start site region 135745
Tssr132489 15 85037079 to 85037143 64 + TSS region transcription start site region 132489
Tssr132490 15 85037163 to 85037176 13 + TSS region transcription start site region 132490
Tssr132491 15 85037181 to 85037231 50 + TSS region transcription start site region 132491
Tssr135746 15 85042262 to 85042269 7 - TSS region transcription start site region 135746
Tssr135747 15 85042271 to 85042278 7 - TSS region transcription start site region 135747
Tssr135748 15 85042308 to 85042318 10 - TSS region transcription start site region 135748
Tssr132492 15 85042503 to 85042522 19 + TSS region transcription start site region 132492
Tssr132493 15 85042708 to 85042738 30 + TSS region transcription start site region 132493
Smc1b 15 85064689 to 85131957 67268 - protein coding gene structural maintenance of chromosomes 1B
Tssr135749 15 85106966 to 85107013 47 - TSS region transcription start site region 135749
Gm10923 15 85116870 to 85117287 417 + pseudogene predicted gene 10923
Tssr4680 15 85121814 to 85121818 4 - TSS region transcription start site region 4680
Tssr135750 15 85127828 to 85127869 41 - TSS region transcription start site region 135750
Cpgi7475 15 85131337 to 85132359 1022 CpG island CpG island 7475
Tssr135751 15 85131949 to 85131987 38 - TSS region transcription start site region 135751
Tssr132494 15 85132061 to 85132078 17 + TSS region transcription start site region 132494
Ribc2 15 85132078 to 85144570 12492 + protein coding gene RIB43A domain with coiled-coils 2
Tssr132495 15 85132080 to 85132121 41 + TSS region transcription start site region 132495
Tssr132496 15 85132138 to 85132143 5 + TSS region transcription start site region 132496
Gm19277 15 85149254 to 85156132 6878 - lincRNA gene predicted gene, 19277
Tssr135752 15 85156126 to 85156137 11 - TSS region transcription start site region 135752
Tssr132497 15 85177739 to 85177762 23 + TSS region transcription start site region 132497
Cpgi7476 15 85205778 to 85206505 727 CpG island CpG island 7476
Fbln1 15 85205942 to 85286294 80352 + protein coding gene fibulin 1
Tssr132498 15 85206022 to 85206045 23 + TSS region transcription start site region 132498
Tssr132499 15 85206046 to 85206072 26 + TSS region transcription start site region 132499
Tssr132500 15 85228859 to 85228873 14 + TSS region transcription start site region 132500
Tssr132501 15 85231478 to 85231496 18 + TSS region transcription start site region 132501
Tssr132502 15 85232554 to 85232580 26 + TSS region transcription start site region 132502
Tssr132503 15 85238500 to 85238529 29 + TSS region transcription start site region 132503
Tssr132504 15 85239319 to 85239330 11 + TSS region transcription start site region 132504
Tssr132505 15 85242034 to 85242049 15 + TSS region transcription start site region 132505
Gm34337 15 85311581 to 85314180 2599 - lncRNA gene predicted gene, 34337
Tssr132506 15 85329369 to 85329382 13 + TSS region transcription start site region 132506
Tssr135753 15 85332631 to 85332638 7 - TSS region transcription start site region 135753
Cpgi7477 15 85336004 to 85337041 1037 CpG island CpG island 7477
Tssr132507 15 85336221 to 85336232 11 + TSS region transcription start site region 132507
Tssr132508 15 85336237 to 85336278 41 + TSS region transcription start site region 132508
Atxn10 15 85336245 to 85463212 126967 + protein coding gene ataxin 10
Tssr132509 15 85336287 to 85336303 16 + TSS region transcription start site region 132509
Tssr132510 15 85336337 to 85336344 7 + TSS region transcription start site region 132510
Tssr132511 15 85336350 to 85336387 37 + TSS region transcription start site region 132511
Tssr132512 15 85336401 to 85336417 16 + TSS region transcription start site region 132512
Tssr132513 15 85336444 to 85336460 16 + TSS region transcription start site region 132513
Gm23517 15 85351063 to 85351254 191 - snRNA gene predicted gene, 23517
Tssr4681 15 85354250 to 85354252 2 - TSS region transcription start site region 4681
Tssr132514 15 85354318 to 85354320 2 + TSS region transcription start site region 132514
Tssr132515 15 85393434 to 85393450 16 + TSS region transcription start site region 132515
Tssr132516 15 85402096 to 85402121 25 + TSS region transcription start site region 132516
Tssr135754 15 85409192 to 85409218 26 - TSS region transcription start site region 135754
A930031G03Rik 15 85417985 to 85418943 958 unclassified gene RIKEN cDNA A930031G03 gene
Tssr132517 15 85418120 to 85418125 5 + TSS region transcription start site region 132517
Tssr132518 15 85462125 to 85462170 45 + TSS region transcription start site region 132518
Tssr132519 15 85462740 to 85462741 1 + TSS region transcription start site region 132519
7530416G11Rik 15 85492736 to 85503227 10491 - protein coding gene RIKEN cDNA 7530416G11 gene
Tssr132520 15 85503905 to 85503923 18 + TSS region transcription start site region 132520
Cpgi7478 15 85507635 to 85507814 179 CpG island CpG island 7478
Gm4825 15 85510812 to 85511219 407 + pseudogene predicted pseudogene 4825
Wnt7b 15 85535437 to 85581821 46384 - protein coding gene wingless-type MMTV integration site family, member 7B
Cpgi7479 15 85537199 to 85537836 637 CpG island CpG island 7479
Cpgi7480 15 85558911 to 85559070 159 CpG island CpG island 7480
Gm34394 15 85565767 to 85580244 14477 + lncRNA gene predicted gene, 34394
Cpgi7481 15 85576220 to 85578353 2133 CpG island CpG island 7481
Tssr135755 15 85577869 to 85577902 33 - TSS region transcription start site region 135755
Tssr135756 15 85578119 to 85578132 13 - TSS region transcription start site region 135756
Tssr135757 15 85578136 to 85578154 18 - TSS region transcription start site region 135757
Cpgi7482 15 85580111 to 85582538 2427 CpG island CpG island 7482
Tssr4682 15 85580145 to 85580150 5 + TSS region transcription start site region 4682
Tssr132521 15 85580178 to 85580190 12 + TSS region transcription start site region 132521
AU022754 15 85581142 to 85593708 12566 + antisense lncRNA gene expressed sequence AU022754
Tssr135758 15 85581809 to 85581820 11 - TSS region transcription start site region 135758
Tssr4683 15 85581825 to 85581832 7 - TSS region transcription start site region 4683
Tssr135759 15 85581836 to 85581913 77 - TSS region transcription start site region 135759
Tssr135760 15 85581927 to 85581949 22 - TSS region transcription start site region 135760
Cpgi7483 15 85615031 to 85615871 840 CpG island CpG island 7483
Cpgi7484 15 85625467 to 85626578 1111 CpG island CpG island 7484
Cpgi7485 15 85634366 to 85635178 812 CpG island CpG island 7485
Tssr132522 15 85634842 to 85634857 15 + TSS region transcription start site region 132522
Tssr132523 15 85634865 to 85634891 26 + TSS region transcription start site region 132523
Tssr132524 15 85634906 to 85634920 14 + TSS region transcription start site region 132524
Tssr132525 15 85645689 to 85645713 24 + TSS region transcription start site region 132525
Cpgi7486 15 85645975 to 85646327 352 CpG island CpG island 7486
Tssr132526 15 85646079 to 85646127 48 + TSS region transcription start site region 132526
Gm49539 15 85646083 to 85667675 21592 + lincRNA gene predicted gene, 49539
Cpgi7487 15 85653442 to 85653922 480 CpG island CpG island 7487
Tssr132527 15 85653550 to 85653604 54 + TSS region transcription start site region 132527
Tssr135761 15 85653878 to 85653912 34 - TSS region transcription start site region 135761
Tssr132528 15 85654697 to 85654699 2 + TSS region transcription start site region 132528
Cpgi7488 15 85660727 to 85661097 370 CpG island CpG island 7488
Cpgi7489 15 85669817 to 85672350 2533 CpG island CpG island 7489
Tssr132529 15 85670993 to 85671019 26 + TSS region transcription start site region 132529
Tssr132530 15 85671260 to 85671279 19 + TSS region transcription start site region 132530
Tssr132531 15 85671474 to 85671511 37 + TSS region transcription start site region 132531
Tssr132532 15 85671519 to 85671533 14 + TSS region transcription start site region 132532
Tssr132533 15 85671809 to 85671816 7 + TSS region transcription start site region 132533
Tssr132534 15 85671825 to 85671837 12 + TSS region transcription start site region 132534
A130088B03Rik 15 85676741 to 85680834 4093 unclassified gene RIKEN cDNA A130088B03 gene
Cpgi7490 15 85678435 to 85678605 170 CpG island CpG island 7490
Tssr132535 15 85679461 to 85679486 25 + TSS region transcription start site region 132535
Lncppara 15 85703773 to 85707524 3751 + lncRNA gene long noncoding RNA near Ppara
Tssr135762 15 85703982 to 85703984 2 - TSS region transcription start site region 135762
Mirc31 15 85706603 to 85707403 800 complex/cluster/region microRNA cluster 31, including Mirlet7c-2 through Mirlet7b
Mirlet7c-2 15 85706603 to 85706697 94 + miRNA gene microRNA let7c-2
Mirlet7b 15 85707319 to 85707403 84 + miRNA gene microRNA let7b
Gm34622 15 85708844 to 85713345 4501 - lncRNA gene predicted gene, 34622
Tssr135763 15 85711605 to 85711612 7 - TSS region transcription start site region 135763