Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:84446637-85366645

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141 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shisal1 15 84379203 to 84447097 67894 - protein coding gene shisa like 1
Gm33830 15 84444746 to 84463567 18821 + lncRNA gene predicted gene, 33830
Cpgi7460 15 84445775 to 84446749 974 CpG island CpG island 7460
Tssr135720 15 84447019 to 84447034 15 - TSS region transcription start site region 135720
Tssr135721 15 84447037 to 84447065 28 - TSS region transcription start site region 135721
Cpgi7461 15 84450615 to 84450886 271 CpG island CpG island 7461
Tssr135722 15 84482843 to 84482865 22 - TSS region transcription start site region 135722
Gm33966 15 84509318 to 84510600 1282 - lncRNA gene predicted gene, 33966
Gm34027 15 84538857 to 84550562 11705 + lncRNA gene predicted gene, 34027
Tssr132467 15 84538946 to 84538955 9 + TSS region transcription start site region 132467
Rtl6 15 84553398 to 84557823 4425 - protein coding gene retrotransposon Gag like 6
Cpgi7462 15 84556891 to 84557945 1054 CpG island CpG island 7462
Tssr135723 15 84557587 to 84557639 52 - TSS region transcription start site region 135723
Tssr135724 15 84557754 to 84557773 19 - TSS region transcription start site region 135724
Tssr135725 15 84557776 to 84557875 99 - TSS region transcription start site region 135725
Gm34095 15 84571730 to 84577117 5387 - lincRNA gene predicted gene, 34095
4933416A02Rik 15 84579523 to 84581440 1917 unclassified gene RIKEN cDNA 4933416A02 gene
Tssr132468 15 84616070 to 84616071 1 + TSS region transcription start site region 132468
Gm34201 15 84617422 to 84627439 10017 - lncRNA gene predicted gene, 34201
Cpgi7463 15 84663001 to 84663968 967 CpG island CpG island 7463
Tssr132469 15 84663188 to 84663234 46 + TSS region transcription start site region 132469
Tssr132470 15 84669565 to 84669609 44 + TSS region transcription start site region 132470
Prr5 15 84669620 to 84703673 34053 + protein coding gene proline rich 5 (renal)
Tssr132471 15 84669645 to 84669647 2 + TSS region transcription start site region 132471
Tssr132472 15 84672862 to 84672866 4 + TSS region transcription start site region 132472
Tssr135726 15 84675188 to 84675199 11 - TSS region transcription start site region 135726
Cpgi7464 15 84680564 to 84681975 1411 CpG island CpG island 7464
Tssr132473 15 84680974 to 84681044 70 + TSS region transcription start site region 132473
Gm41374 15 84708698 to 84713818 5120 - lncRNA gene predicted gene, 41374
Gm20556 15 84714629 to 84720266 5637 - lincRNA gene predicted gene, 20556
Cpgi7465 15 84714817 to 84715063 246 CpG island CpG island 7465
D15Mit72 15 84715369 to 84715511 142 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 72
Cpgi7466 15 84719562 to 84720177 615 CpG island CpG island 7466
Arhgap8 15 84720052 to 84772207 52155 + protein coding gene Rho GTPase activating protein 8
Tssr132474 15 84720053 to 84720092 39 + TSS region transcription start site region 132474
Tssr132475 15 84720093 to 84720104 11 + TSS region transcription start site region 132475
Tssr132476 15 84765691 to 84765707 16 + TSS region transcription start site region 132476
Tssr132477 15 84766874 to 84766882 8 + TSS region transcription start site region 132477
Cpgi7467 15 84784867 to 84785207 340 CpG island CpG island 7467
Phf21b 15 84785381 to 84856049 70668 - protein coding gene PHD finger protein 21B
Cpgi7468 15 84785622 to 84786193 571 CpG island CpG island 7468
Cpgi7469 15 84853420 to 84856594 3174 CpG island CpG island 7469
Tssr135727 15 84855070 to 84855084 14 - TSS region transcription start site region 135727
Tssr135728 15 84855093 to 84855127 34 - TSS region transcription start site region 135728
Tssr135729 15 84855130 to 84855145 15 - TSS region transcription start site region 135729
Tssr135730 15 84855174 to 84855188 14 - TSS region transcription start site region 135730
Tssr135731 15 84856020 to 84856032 12 - TSS region transcription start site region 135731
Tssr135732 15 84856043 to 84856057 14 - TSS region transcription start site region 135732
Tssr135733 15 84856065 to 84856091 26 - TSS region transcription start site region 135733
Tssr135734 15 84856095 to 84856111 16 - TSS region transcription start site region 135734
Tssr135735 15 84856112 to 84856139 27 - TSS region transcription start site region 135735
Tssr135736 15 84856541 to 84856546 5 - TSS region transcription start site region 135736
Gm4217 15 84866317 to 84867318 1001 + pseudogene predicted gene 4217
Gm46528 15 84890574 to 84896694 6120 - lncRNA gene predicted gene, 46528
Tssr132478 15 84906630 to 84906635 5 + TSS region transcription start site region 132478
Tssr132479 15 84906637 to 84906645 8 + TSS region transcription start site region 132479
4930513L16Rik 15 84906642 to 84913731 7089 + lincRNA gene RIKEN cDNA 4930513L16 gene
Tssr132480 15 84906652 to 84906672 20 + TSS region transcription start site region 132480
Gm29666 15 84913790 to 84922682 8892 - protein coding gene predicted gene 29666
Cpgi7470 15 84922671 to 84924168 1497 CpG island CpG island 7470
Tssr4675 15 84923106 to 84923154 48 - TSS region transcription start site region 4675
Tssr4676 15 84923372 to 84923379 7 + TSS region transcription start site region 4676
Tssr132481 15 84923383 to 84923422 39 + TSS region transcription start site region 132481
Nup50 15 84923428 to 84942963 19535 + protein coding gene nucleoporin 50
Tssr132482 15 84923440 to 84923451 11 + TSS region transcription start site region 132482
Tssr135737 15 84923940 to 84923958 18 - TSS region transcription start site region 135737
5031439G07Rik 15 84945720 to 84987971 42251 - protein coding gene RIKEN cDNA 5031439G07 gene
Tssr135738 15 84949001 to 84949062 61 - TSS region transcription start site region 135738
Tssr135739 15 84949082 to 84949100 18 - TSS region transcription start site region 135739
Mir1249 15 84951526 to 84951623 97 - miRNA gene microRNA 1249
Tssr135740 15 84960943 to 84960971 28 - TSS region transcription start site region 135740
Tssr135741 15 84960978 to 84960994 16 - TSS region transcription start site region 135741
Cpgi7471 15 84987072 to 84988425 1353 CpG island CpG island 7471
Tssr4677 15 84987847 to 84987850 3 - TSS region transcription start site region 4677
Tssr4678 15 84987854 to 84987857 3 - TSS region transcription start site region 4678
Tssr135742 15 84987958 to 84988018 60 - TSS region transcription start site region 135742
Tssr132483 15 84987963 to 84987987 24 + TSS region transcription start site region 132483
Tssr135743 15 84988022 to 84988031 9 - TSS region transcription start site region 135743
Gm39558 15 84988035 to 85006203 18168 + lncRNA gene predicted gene, 39558
Cpgi7472 15 85001445 to 85001678 233 CpG island CpG island 7472
Tssr132484 15 85008066 to 85008067 1 + TSS region transcription start site region 132484
Gm6847 15 85008139 to 85009000 861 + pseudogene predicted gene 6847
Gm49523 15 85015797 to 85016424 627 - pseudogene predicted gene, 49523
Cpgi7473 15 85017099 to 85017282 183 CpG island CpG island 7473
Tssr4679 15 85017133 to 85017134 1 + TSS region transcription start site region 4679
Tssr132485 15 85017138 to 85017141 3 + TSS region transcription start site region 132485
Upk3a 15 85017141 to 85022547 5406 + protein coding gene uroplakin 3A
Tssr132486 15 85017163 to 85017200 37 + TSS region transcription start site region 132486
Tssr132487 15 85017207 to 85017212 5 + TSS region transcription start site region 132487
Tssr132488 15 85028944 to 85028958 14 + TSS region transcription start site region 132488
Fam118a 15 85028948 to 85062830 33882 + protein coding gene family with sequence similarity 118, member A
Cpgi7474 15 85036487 to 85037767 1280 CpG island CpG island 7474
Tssr135744 15 85036878 to 85036892 14 - TSS region transcription start site region 135744
Tssr135745 15 85036923 to 85036944 21 - TSS region transcription start site region 135745
Tssr132489 15 85037079 to 85037143 64 + TSS region transcription start site region 132489
Tssr132490 15 85037163 to 85037176 13 + TSS region transcription start site region 132490
Tssr132491 15 85037181 to 85037231 50 + TSS region transcription start site region 132491
Tssr135746 15 85042262 to 85042269 7 - TSS region transcription start site region 135746
Tssr135747 15 85042271 to 85042278 7 - TSS region transcription start site region 135747
Tssr135748 15 85042308 to 85042318 10 - TSS region transcription start site region 135748
Tssr132492 15 85042503 to 85042522 19 + TSS region transcription start site region 132492
Tssr132493 15 85042708 to 85042738 30 + TSS region transcription start site region 132493
Smc1b 15 85064689 to 85131957 67268 - protein coding gene structural maintenance of chromosomes 1B
Tssr135749 15 85106966 to 85107013 47 - TSS region transcription start site region 135749
Gm10923 15 85116870 to 85117287 417 + pseudogene predicted gene 10923
Tssr4680 15 85121814 to 85121818 4 - TSS region transcription start site region 4680
Tssr135750 15 85127828 to 85127869 41 - TSS region transcription start site region 135750
Cpgi7475 15 85131337 to 85132359 1022 CpG island CpG island 7475
Tssr135751 15 85131949 to 85131987 38 - TSS region transcription start site region 135751
Tssr132494 15 85132061 to 85132078 17 + TSS region transcription start site region 132494
Ribc2 15 85132078 to 85144570 12492 + protein coding gene RIB43A domain with coiled-coils 2
Tssr132495 15 85132080 to 85132121 41 + TSS region transcription start site region 132495
Tssr132496 15 85132138 to 85132143 5 + TSS region transcription start site region 132496
Gm19277 15 85149254 to 85156132 6878 - lincRNA gene predicted gene, 19277
Tssr135752 15 85156126 to 85156137 11 - TSS region transcription start site region 135752
Tssr132497 15 85177739 to 85177762 23 + TSS region transcription start site region 132497
Cpgi7476 15 85205778 to 85206505 727 CpG island CpG island 7476
Fbln1 15 85205942 to 85286294 80352 + protein coding gene fibulin 1
Tssr132498 15 85206022 to 85206045 23 + TSS region transcription start site region 132498
Tssr132499 15 85206046 to 85206072 26 + TSS region transcription start site region 132499
Tssr132500 15 85228859 to 85228873 14 + TSS region transcription start site region 132500
Tssr132501 15 85231478 to 85231496 18 + TSS region transcription start site region 132501
Tssr132502 15 85232554 to 85232580 26 + TSS region transcription start site region 132502
Tssr132503 15 85238500 to 85238529 29 + TSS region transcription start site region 132503
Tssr132504 15 85239319 to 85239330 11 + TSS region transcription start site region 132504
Tssr132505 15 85242034 to 85242049 15 + TSS region transcription start site region 132505
Gm34337 15 85311581 to 85314180 2599 - lncRNA gene predicted gene, 34337
Tssr132506 15 85329369 to 85329382 13 + TSS region transcription start site region 132506
Tssr135753 15 85332631 to 85332638 7 - TSS region transcription start site region 135753
Cpgi7477 15 85336004 to 85337041 1037 CpG island CpG island 7477
Tssr132507 15 85336221 to 85336232 11 + TSS region transcription start site region 132507
Tssr132508 15 85336237 to 85336278 41 + TSS region transcription start site region 132508
Atxn10 15 85336245 to 85463212 126967 + protein coding gene ataxin 10
Tssr132509 15 85336287 to 85336303 16 + TSS region transcription start site region 132509
Tssr132510 15 85336337 to 85336344 7 + TSS region transcription start site region 132510
Tssr132511 15 85336350 to 85336387 37 + TSS region transcription start site region 132511
Tssr132512 15 85336401 to 85336417 16 + TSS region transcription start site region 132512
Tssr132513 15 85336444 to 85336460 16 + TSS region transcription start site region 132513
Gm23517 15 85351063 to 85351254 191 - snRNA gene predicted gene, 23517
Tssr4681 15 85354250 to 85354252 2 - TSS region transcription start site region 4681
Tssr132514 15 85354318 to 85354320 2 + TSS region transcription start site region 132514