Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:84129203-84697097

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm33432 15 84127278 to 84133211 5933 + lincRNA gene predicted gene, 33432
Tssr135706 15 84132035 to 84132040 5 - TSS region transcription start site region 135706
Tssr135707 15 84132063 to 84132077 14 - TSS region transcription start site region 135707
Gm33530 15 84164859 to 84165830 971 - lncRNA gene predicted gene, 33530
Cpgi7457 15 84167622 to 84168443 821 CpG island CpG island 7457
Tssr132445 15 84167761 to 84167772 11 + TSS region transcription start site region 132445
Tssr132446 15 84167804 to 84167824 20 + TSS region transcription start site region 132446
Tssr132447 15 84167827 to 84167843 16 + TSS region transcription start site region 132447
Pnpla3 15 84167837 to 84187236 19399 + protein coding gene patatin-like phospholipase domain containing 3
Mir6392 15 84168270 to 84168377 107 + miRNA gene microRNA 6392
Gm49513 15 84181914 to 84195881 13967 + unclassified non-coding RNA gene predicted gene, 49513
Gm20369 15 84182709 to 84183015 306 - pseudogene predicted gene, 20369
Tssr135708 15 84183058 to 84183074 16 - TSS region transcription start site region 135708
Tssr135709 15 84185064 to 84185105 41 - TSS region transcription start site region 135709
Tssr135710 15 84185152 to 84185156 4 - TSS region transcription start site region 135710
Tssr135711 15 84185165 to 84185176 11 - TSS region transcription start site region 135711
Cpgi7458 15 84191910 to 84192665 755 CpG island CpG island 7458
Tssr135712 15 84192106 to 84192157 51 - TSS region transcription start site region 135712
Tssr132448 15 84192223 to 84192260 37 + TSS region transcription start site region 132448
Samm50 15 84192233 to 84214303 22070 + protein coding gene SAMM50 sorting and assembly machinery component
Tssr132449 15 84192261 to 84192286 25 + TSS region transcription start site region 132449
Tssr132450 15 84192289 to 84192305 16 + TSS region transcription start site region 132450
Tssr135713 15 84217176 to 84217196 20 - TSS region transcription start site region 135713
Cpgi7459 15 84231631 to 84232518 887 CpG island CpG island 7459
Tssr132451 15 84232030 to 84232041 11 + TSS region transcription start site region 132451
Parvb 15 84232043 to 84315609 83566 + protein coding gene parvin, beta
Tssr132452 15 84232050 to 84232076 26 + TSS region transcription start site region 132452
Tssr132453 15 84232093 to 84232109 16 + TSS region transcription start site region 132453
Gm33723 15 84237496 to 84240185 2689 - lncRNA gene predicted gene, 33723
Tssr135714 15 84238885 to 84238887 2 - TSS region transcription start site region 135714
Tssr135715 15 84239925 to 84239943 18 - TSS region transcription start site region 135715
Tssr132454 15 84257127 to 84257151 24 + TSS region transcription start site region 132454
Tssr132455 15 84257161 to 84257172 11 + TSS region transcription start site region 132455
Tssr132456 15 84298142 to 84298145 3 + TSS region transcription start site region 132456
Tssr4674 15 84301462 to 84301468 6 + TSS region transcription start site region 4674
Tssr132457 15 84321931 to 84321968 37 + TSS region transcription start site region 132457
Gm22890 15 84323209 to 84323352 143 - snoRNA gene predicted gene, 22890
Parvg 15 84324026 to 84342978 18952 + protein coding gene parvin, gamma
Tssr132458 15 84324192 to 84324204 12 + TSS region transcription start site region 132458
Tssr132459 15 84324440 to 84324463 23 + TSS region transcription start site region 132459
Tssr132460 15 84324466 to 84324483 17 + TSS region transcription start site region 132460
Tssr132461 15 84324716 to 84324723 7 + TSS region transcription start site region 132461
Tssr132462 15 84324725 to 84324777 52 + TSS region transcription start site region 132462
Tssr132463 15 84324780 to 84324811 31 + TSS region transcription start site region 132463
Tssr132464 15 84327123 to 84327133 10 + TSS region transcription start site region 132464
Gm5214 15 84346202 to 84346780 578 - pseudogene predicted gene 5214
Shisal1 15 84379203 to 84447097 67894 - protein coding gene shisa like 1
Pstc3 15 84386497 to 84386646 149 QTL periosteal circumference 3
D15Mit107 15 84386497 to 84386646 149 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 107
Tssr132465 15 84412670 to 84412671 1 + TSS region transcription start site region 132465
Gm46527 15 84430181 to 84441748 11567 + protein coding gene predicted gene, 46527
Tssr135716 15 84436295 to 84436298 3 - TSS region transcription start site region 135716
Tssr135717 15 84444288 to 84444315 27 - TSS region transcription start site region 135717
Tssr135718 15 84444319 to 84444330 11 - TSS region transcription start site region 135718
Gm33830 15 84444746 to 84463567 18821 + lncRNA gene predicted gene, 33830
Cpgi7460 15 84445775 to 84446749 974 CpG island CpG island 7460
Tssr132466 15 84446053 to 84446064 11 + TSS region transcription start site region 132466
Tssr135719 15 84446537 to 84446581 44 - TSS region transcription start site region 135719
Tssr135720 15 84447019 to 84447034 15 - TSS region transcription start site region 135720
Tssr135721 15 84447037 to 84447065 28 - TSS region transcription start site region 135721
Cpgi7461 15 84450615 to 84450886 271 CpG island CpG island 7461
Tssr135722 15 84482843 to 84482865 22 - TSS region transcription start site region 135722
Gm33966 15 84509318 to 84510600 1282 - lncRNA gene predicted gene, 33966
Gm34027 15 84538857 to 84550562 11705 + lncRNA gene predicted gene, 34027
Tssr132467 15 84538946 to 84538955 9 + TSS region transcription start site region 132467
Rtl6 15 84553398 to 84557823 4425 - protein coding gene retrotransposon Gag like 6
Cpgi7462 15 84556891 to 84557945 1054 CpG island CpG island 7462
Tssr135723 15 84557587 to 84557639 52 - TSS region transcription start site region 135723
Tssr135724 15 84557754 to 84557773 19 - TSS region transcription start site region 135724
Tssr135725 15 84557776 to 84557875 99 - TSS region transcription start site region 135725
Gm34095 15 84571730 to 84577117 5387 - lincRNA gene predicted gene, 34095
4933416A02Rik 15 84579523 to 84581440 1917 unclassified gene RIKEN cDNA 4933416A02 gene
Tssr132468 15 84616070 to 84616071 1 + TSS region transcription start site region 132468
Gm34201 15 84617422 to 84627439 10017 - lncRNA gene predicted gene, 34201
Cpgi7463 15 84663001 to 84663968 967 CpG island CpG island 7463
Tssr132469 15 84663188 to 84663234 46 + TSS region transcription start site region 132469
Tssr132470 15 84669565 to 84669609 44 + TSS region transcription start site region 132470
Prr5 15 84669620 to 84703673 34053 + protein coding gene proline rich 5 (renal)
Tssr132471 15 84669645 to 84669647 2 + TSS region transcription start site region 132471
Tssr132472 15 84672862 to 84672866 4 + TSS region transcription start site region 132472
Tssr135726 15 84675188 to 84675199 11 - TSS region transcription start site region 135726
Cpgi7464 15 84680564 to 84681975 1411 CpG island CpG island 7464
Tssr132473 15 84680974 to 84681044 70 + TSS region transcription start site region 132473