Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:83949318-85070600

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178 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Efcab6 15 83866712 to 84065379 198667 - protein coding gene EF-hand calcium binding domain 6
Cpgi7454 15 83998113 to 83998495 382 CpG island CpG island 7454
Rpl31-ps22 15 84030339 to 84030675 336 + pseudogene ribosomal protein L31, pseudogene 22
Tssr135699 15 84055071 to 84055099 28 - TSS region transcription start site region 135699
Tssr135700 15 84055103 to 84055110 7 - TSS region transcription start site region 135700
4933433M23Rik 15 84055207 to 84056590 1383 unclassified gene RIKEN cDNA 4933433M23 gene
Cpgi7455 15 84064939 to 84065475 536 CpG island CpG island 7455
Tssr135701 15 84065329 to 84065364 35 - TSS region transcription start site region 135701
Sult4a1 15 84076097 to 84105754 29657 - protein coding gene sulfotransferase family 4A, member 1
Tssr135702 15 84090643 to 84090672 29 - TSS region transcription start site region 135702
Cpgi7456 15 84104668 to 84106139 1471 CpG island CpG island 7456
Tssr135703 15 84105599 to 84105658 59 - TSS region transcription start site region 135703
Tssr135704 15 84105662 to 84105674 12 - TSS region transcription start site region 135704
Gm46526 15 84106658 to 84108851 2193 + lincRNA gene predicted gene, 46526
Pnpla5 15 84112356 to 84123175 10819 - protein coding gene patatin-like phospholipase domain containing 5
Tssr132441 15 84123116 to 84123117 1 + TSS region transcription start site region 132441
Tssr135705 15 84123174 to 84123203 29 - TSS region transcription start site region 135705
Gm33432 15 84127278 to 84133211 5933 + lincRNA gene predicted gene, 33432
Tssr132442 15 84127300 to 84127320 20 + TSS region transcription start site region 132442
Tssr132443 15 84127323 to 84127334 11 + TSS region transcription start site region 132443
Tssr132444 15 84127357 to 84127366 9 + TSS region transcription start site region 132444
Tssr135706 15 84132035 to 84132040 5 - TSS region transcription start site region 135706
Tssr135707 15 84132063 to 84132077 14 - TSS region transcription start site region 135707
Gm33530 15 84164859 to 84165830 971 - lncRNA gene predicted gene, 33530
Cpgi7457 15 84167622 to 84168443 821 CpG island CpG island 7457
Tssr132445 15 84167761 to 84167772 11 + TSS region transcription start site region 132445
Tssr132446 15 84167804 to 84167824 20 + TSS region transcription start site region 132446
Tssr132447 15 84167827 to 84167843 16 + TSS region transcription start site region 132447
Pnpla3 15 84167837 to 84187236 19399 + protein coding gene patatin-like phospholipase domain containing 3
Mir6392 15 84168270 to 84168377 107 + miRNA gene microRNA 6392
Gm49513 15 84181914 to 84195881 13967 + unclassified non-coding RNA gene predicted gene, 49513
Gm20369 15 84182709 to 84183015 306 - pseudogene predicted gene, 20369
Tssr135708 15 84183058 to 84183074 16 - TSS region transcription start site region 135708
Tssr135709 15 84185064 to 84185105 41 - TSS region transcription start site region 135709
Tssr135710 15 84185152 to 84185156 4 - TSS region transcription start site region 135710
Tssr135711 15 84185165 to 84185176 11 - TSS region transcription start site region 135711
Cpgi7458 15 84191910 to 84192665 755 CpG island CpG island 7458
Tssr135712 15 84192106 to 84192157 51 - TSS region transcription start site region 135712
Tssr132448 15 84192223 to 84192260 37 + TSS region transcription start site region 132448
Samm50 15 84192233 to 84214303 22070 + protein coding gene SAMM50 sorting and assembly machinery component
Tssr132449 15 84192261 to 84192286 25 + TSS region transcription start site region 132449
Tssr132450 15 84192289 to 84192305 16 + TSS region transcription start site region 132450
Tssr135713 15 84217176 to 84217196 20 - TSS region transcription start site region 135713
Cpgi7459 15 84231631 to 84232518 887 CpG island CpG island 7459
Tssr132451 15 84232030 to 84232041 11 + TSS region transcription start site region 132451
Parvb 15 84232043 to 84315609 83566 + protein coding gene parvin, beta
Tssr132452 15 84232050 to 84232076 26 + TSS region transcription start site region 132452
Tssr132453 15 84232093 to 84232109 16 + TSS region transcription start site region 132453
Gm33723 15 84237496 to 84240185 2689 - lncRNA gene predicted gene, 33723
Tssr135714 15 84238885 to 84238887 2 - TSS region transcription start site region 135714
Tssr135715 15 84239925 to 84239943 18 - TSS region transcription start site region 135715
Tssr132454 15 84257127 to 84257151 24 + TSS region transcription start site region 132454
Tssr132455 15 84257161 to 84257172 11 + TSS region transcription start site region 132455
Tssr132456 15 84298142 to 84298145 3 + TSS region transcription start site region 132456
Tssr4674 15 84301462 to 84301468 6 + TSS region transcription start site region 4674
Tssr132457 15 84321931 to 84321968 37 + TSS region transcription start site region 132457
Gm22890 15 84323209 to 84323352 143 - snoRNA gene predicted gene, 22890
Parvg 15 84324026 to 84342978 18952 + protein coding gene parvin, gamma
Tssr132458 15 84324192 to 84324204 12 + TSS region transcription start site region 132458
Tssr132459 15 84324440 to 84324463 23 + TSS region transcription start site region 132459
Tssr132460 15 84324466 to 84324483 17 + TSS region transcription start site region 132460
Tssr132461 15 84324716 to 84324723 7 + TSS region transcription start site region 132461
Tssr132462 15 84324725 to 84324777 52 + TSS region transcription start site region 132462
Tssr132463 15 84324780 to 84324811 31 + TSS region transcription start site region 132463
Tssr132464 15 84327123 to 84327133 10 + TSS region transcription start site region 132464
Gm5214 15 84346202 to 84346780 578 - pseudogene predicted gene 5214
Shisal1 15 84379203 to 84447097 67894 - protein coding gene shisa like 1
D15Mit107 15 84386497 to 84386646 149 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 107
Pstc3 15 84386497 to 84386646 149 QTL periosteal circumference 3
Tssr132465 15 84412670 to 84412671 1 + TSS region transcription start site region 132465
Gm46527 15 84430181 to 84441748 11567 + protein coding gene predicted gene, 46527
Tssr135716 15 84436295 to 84436298 3 - TSS region transcription start site region 135716
Tssr135717 15 84444288 to 84444315 27 - TSS region transcription start site region 135717
Tssr135718 15 84444319 to 84444330 11 - TSS region transcription start site region 135718
Gm33830 15 84444746 to 84463567 18821 + lncRNA gene predicted gene, 33830
Cpgi7460 15 84445775 to 84446749 974 CpG island CpG island 7460
Tssr132466 15 84446053 to 84446064 11 + TSS region transcription start site region 132466
Tssr135719 15 84446537 to 84446581 44 - TSS region transcription start site region 135719
Tssr135720 15 84447019 to 84447034 15 - TSS region transcription start site region 135720
Tssr135721 15 84447037 to 84447065 28 - TSS region transcription start site region 135721
Cpgi7461 15 84450615 to 84450886 271 CpG island CpG island 7461
Tssr135722 15 84482843 to 84482865 22 - TSS region transcription start site region 135722
Gm33966 15 84509318 to 84510600 1282 - lncRNA gene predicted gene, 33966
Gm34027 15 84538857 to 84550562 11705 + lncRNA gene predicted gene, 34027
Tssr132467 15 84538946 to 84538955 9 + TSS region transcription start site region 132467
Rtl6 15 84553398 to 84557823 4425 - protein coding gene retrotransposon Gag like 6
Cpgi7462 15 84556891 to 84557945 1054 CpG island CpG island 7462
Tssr135723 15 84557587 to 84557639 52 - TSS region transcription start site region 135723
Tssr135724 15 84557754 to 84557773 19 - TSS region transcription start site region 135724
Tssr135725 15 84557776 to 84557875 99 - TSS region transcription start site region 135725
Gm34095 15 84571730 to 84577117 5387 - lincRNA gene predicted gene, 34095
4933416A02Rik 15 84579523 to 84581440 1917 unclassified gene RIKEN cDNA 4933416A02 gene
Tssr132468 15 84616070 to 84616071 1 + TSS region transcription start site region 132468
Gm34201 15 84617422 to 84627439 10017 - lncRNA gene predicted gene, 34201
Cpgi7463 15 84663001 to 84663968 967 CpG island CpG island 7463
Tssr132469 15 84663188 to 84663234 46 + TSS region transcription start site region 132469
Tssr132470 15 84669565 to 84669609 44 + TSS region transcription start site region 132470
Prr5 15 84669620 to 84703673 34053 + protein coding gene proline rich 5 (renal)
Tssr132471 15 84669645 to 84669647 2 + TSS region transcription start site region 132471
Tssr132472 15 84672862 to 84672866 4 + TSS region transcription start site region 132472
Tssr135726 15 84675188 to 84675199 11 - TSS region transcription start site region 135726
Cpgi7464 15 84680564 to 84681975 1411 CpG island CpG island 7464
Tssr132473 15 84680974 to 84681044 70 + TSS region transcription start site region 132473
Gm41374 15 84708698 to 84713818 5120 - lncRNA gene predicted gene, 41374
Gm20556 15 84714629 to 84720266 5637 - lincRNA gene predicted gene, 20556
Cpgi7465 15 84714817 to 84715063 246 CpG island CpG island 7465
D15Mit72 15 84715369 to 84715511 142 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 72
Cpgi7466 15 84719562 to 84720177 615 CpG island CpG island 7466
Arhgap8 15 84720052 to 84772207 52155 + protein coding gene Rho GTPase activating protein 8
Tssr132474 15 84720053 to 84720092 39 + TSS region transcription start site region 132474
Tssr132475 15 84720093 to 84720104 11 + TSS region transcription start site region 132475
Tssr132476 15 84765691 to 84765707 16 + TSS region transcription start site region 132476
Tssr132477 15 84766874 to 84766882 8 + TSS region transcription start site region 132477
Cpgi7467 15 84784867 to 84785207 340 CpG island CpG island 7467
Phf21b 15 84785381 to 84856049 70668 - protein coding gene PHD finger protein 21B
Cpgi7468 15 84785622 to 84786193 571 CpG island CpG island 7468
Cpgi7469 15 84853420 to 84856594 3174 CpG island CpG island 7469
Tssr135727 15 84855070 to 84855084 14 - TSS region transcription start site region 135727
Tssr135728 15 84855093 to 84855127 34 - TSS region transcription start site region 135728
Tssr135729 15 84855130 to 84855145 15 - TSS region transcription start site region 135729
Tssr135730 15 84855174 to 84855188 14 - TSS region transcription start site region 135730
Tssr135731 15 84856020 to 84856032 12 - TSS region transcription start site region 135731
Tssr135732 15 84856043 to 84856057 14 - TSS region transcription start site region 135732
Tssr135733 15 84856065 to 84856091 26 - TSS region transcription start site region 135733
Tssr135734 15 84856095 to 84856111 16 - TSS region transcription start site region 135734
Tssr135735 15 84856112 to 84856139 27 - TSS region transcription start site region 135735
Tssr135736 15 84856541 to 84856546 5 - TSS region transcription start site region 135736
Gm4217 15 84866317 to 84867318 1001 + pseudogene predicted gene 4217
Gm46528 15 84890574 to 84896694 6120 - lncRNA gene predicted gene, 46528
Tssr132478 15 84906630 to 84906635 5 + TSS region transcription start site region 132478
Tssr132479 15 84906637 to 84906645 8 + TSS region transcription start site region 132479
4930513L16Rik 15 84906642 to 84913731 7089 + lincRNA gene RIKEN cDNA 4930513L16 gene
Tssr132480 15 84906652 to 84906672 20 + TSS region transcription start site region 132480
Gm29666 15 84913790 to 84922682 8892 - protein coding gene predicted gene 29666
Cpgi7470 15 84922671 to 84924168 1497 CpG island CpG island 7470
Tssr4675 15 84923106 to 84923154 48 - TSS region transcription start site region 4675
Tssr4676 15 84923372 to 84923379 7 + TSS region transcription start site region 4676
Tssr132481 15 84923383 to 84923422 39 + TSS region transcription start site region 132481
Nup50 15 84923428 to 84942963 19535 + protein coding gene nucleoporin 50
Tssr132482 15 84923440 to 84923451 11 + TSS region transcription start site region 132482
Tssr135737 15 84923940 to 84923958 18 - TSS region transcription start site region 135737
5031439G07Rik 15 84945720 to 84987971 42251 - protein coding gene RIKEN cDNA 5031439G07 gene
Tssr135738 15 84949001 to 84949062 61 - TSS region transcription start site region 135738
Tssr135739 15 84949082 to 84949100 18 - TSS region transcription start site region 135739
Mir1249 15 84951526 to 84951623 97 - miRNA gene microRNA 1249
Tssr135740 15 84960943 to 84960971 28 - TSS region transcription start site region 135740
Tssr135741 15 84960978 to 84960994 16 - TSS region transcription start site region 135741
Cpgi7471 15 84987072 to 84988425 1353 CpG island CpG island 7471
Tssr4677 15 84987847 to 84987850 3 - TSS region transcription start site region 4677
Tssr4678 15 84987854 to 84987857 3 - TSS region transcription start site region 4678
Tssr135742 15 84987958 to 84988018 60 - TSS region transcription start site region 135742
Tssr132483 15 84987963 to 84987987 24 + TSS region transcription start site region 132483
Tssr135743 15 84988022 to 84988031 9 - TSS region transcription start site region 135743
Gm39558 15 84988035 to 85006203 18168 + lncRNA gene predicted gene, 39558
Cpgi7472 15 85001445 to 85001678 233 CpG island CpG island 7472
Tssr132484 15 85008066 to 85008067 1 + TSS region transcription start site region 132484
Gm6847 15 85008139 to 85009000 861 + pseudogene predicted gene 6847
Gm49523 15 85015797 to 85016424 627 - pseudogene predicted gene, 49523
Cpgi7473 15 85017099 to 85017282 183 CpG island CpG island 7473
Tssr4679 15 85017133 to 85017134 1 + TSS region transcription start site region 4679
Tssr132485 15 85017138 to 85017141 3 + TSS region transcription start site region 132485
Upk3a 15 85017141 to 85022547 5406 + protein coding gene uroplakin 3A
Tssr132486 15 85017163 to 85017200 37 + TSS region transcription start site region 132486
Tssr132487 15 85017207 to 85017212 5 + TSS region transcription start site region 132487
Tssr132488 15 85028944 to 85028958 14 + TSS region transcription start site region 132488
Fam118a 15 85028948 to 85062830 33882 + protein coding gene family with sequence similarity 118, member A
Cpgi7474 15 85036487 to 85037767 1280 CpG island CpG island 7474
Tssr135744 15 85036878 to 85036892 14 - TSS region transcription start site region 135744
Tssr135745 15 85036923 to 85036944 21 - TSS region transcription start site region 135745
Tssr132489 15 85037079 to 85037143 64 + TSS region transcription start site region 132489
Tssr132490 15 85037163 to 85037176 13 + TSS region transcription start site region 132490
Tssr132491 15 85037181 to 85037231 50 + TSS region transcription start site region 132491
Tssr135746 15 85042262 to 85042269 7 - TSS region transcription start site region 135746
Tssr135747 15 85042271 to 85042278 7 - TSS region transcription start site region 135747
Tssr135748 15 85042308 to 85042318 10 - TSS region transcription start site region 135748
Tssr132492 15 85042503 to 85042522 19 + TSS region transcription start site region 132492
Tssr132493 15 85042708 to 85042738 30 + TSS region transcription start site region 132493
Smc1b 15 85064689 to 85131957 67268 - protein coding gene structural maintenance of chromosomes 1B