Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:8392949-9642335

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176 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
In(15Rictor;Slc1a3)1Ove 15 6708379 to 8710764 2002385 chromosomal inversion inversion, Chr 15, Paul A Overbeek 1
Nipbl 15 8290617 to 8444463 153846 - protein coding gene NIPBL cohesin loading factor
Tssr133661 15 8398018 to 8398021 3 - TSS region transcription start site region 133661
Tssr133662 15 8430748 to 8430761 13 - TSS region transcription start site region 133662
AW557046 15 8435112 to 8445863 10751 + protein coding gene expressed sequence AW557046
Tssr133663 15 8436656 to 8436660 4 - TSS region transcription start site region 133663
Cpgi6933 15 8443486 to 8445654 2168 CpG island CpG island 6933
Tssr130591 15 8443605 to 8443636 31 + TSS region transcription start site region 130591
Tssr133664 15 8444164 to 8444209 45 - TSS region transcription start site region 133664
Tssr133665 15 8444218 to 8444246 28 - TSS region transcription start site region 133665
Tssr133666 15 8444435 to 8444448 13 - TSS region transcription start site region 133666
Tssr133667 15 8444449 to 8444506 57 - TSS region transcription start site region 133667
Tssr133668 15 8444609 to 8444668 59 - TSS region transcription start site region 133668
Tssr130592 15 8444733 to 8444749 16 + TSS region transcription start site region 130592
Tssr4546 15 8444865 to 8444877 12 - TSS region transcription start site region 4546
Tssr130593 15 8444965 to 8444973 8 + TSS region transcription start site region 130593
Tssr130594 15 8445410 to 8445420 10 + TSS region transcription start site region 130594
Tssr130595 15 8445565 to 8445570 5 + TSS region transcription start site region 130595
Cpgi6934 15 8445981 to 8446220 239 CpG island CpG island 6934
Tssr130596 15 8446188 to 8446194 6 + TSS region transcription start site region 130596
Tssr133669 15 8465276 to 8465305 29 - TSS region transcription start site region 133669
Tssr133670 15 8465308 to 8465321 13 - TSS region transcription start site region 133670
Gm49247 15 8480871 to 8481945 1074 - lincRNA gene predicted gene, 49247
Gm31282 15 8482119 to 8500343 18224 + lincRNA gene predicted gene, 31282
D15Mit247 15 8501490 to 8501637 147 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology-247
Tssr130597 15 8512112 to 8512140 28 + TSS region transcription start site region 130597
Gm49249 15 8512327 to 8532794 20467 + lincRNA gene predicted gene, 49249
Gm2310 15 8518683 to 8519953 1270 - protein coding gene predicted gene 2310
Gm2348 15 8529135 to 8529434 299 - pseudogene predicted pseudogene 2348
Gm49250 15 8529435 to 8529591 156 - pseudogene predicted gene, 49250
Cpgi6935 15 8568782 to 8569743 961 CpG island CpG island 6935
Tssr130598 15 8569964 to 8569979 15 + TSS region transcription start site region 130598
D15Mit224 15 8576710 to 8576826 116 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 224
Gm46508 15 8582643 to 8593341 10698 + lncRNA gene predicted gene, 46508
Tssr133671 15 8602008 to 8602009 1 - TSS region transcription start site region 133671
AA589642 15 8605450 to 8605851 401 unclassified gene expressed sequence AA589642
Cpgi6936 15 8629620 to 8629906 286 CpG island CpG island 6936
Slc1a3 15 8634124 to 8710764 76640 - protein coding gene solute carrier family 1 (glial high affinity glutamate transporter), member 3
Tssr133672 15 8634861 to 8634884 23 - TSS region transcription start site region 133672
Tssr133673 15 8635267 to 8635278 11 - TSS region transcription start site region 133673
Tssr133674 15 8636033 to 8636039 6 - TSS region transcription start site region 133674
Tssr133675 15 8639189 to 8639190 1 - TSS region transcription start site region 133675
Tssr133676 15 8642281 to 8642292 11 - TSS region transcription start site region 133676
Tssr133677 15 8643223 to 8643231 8 - TSS region transcription start site region 133677
Gm37310 15 8652106 to 8655073 2967 - unclassified gene predicted gene, 37310
E130014H10Rik 15 8664965 to 8667234 2269 unclassified gene RIKEN cDNA E130014H10 gene
Tssr133678 15 8683613 to 8683616 3 - TSS region transcription start site region 133678
Cpgi6937 15 8710193 to 8710643 450 CpG island CpG island 6937
Tssr133679 15 8710444 to 8710498 54 - TSS region transcription start site region 133679
Tssr133680 15 8710734 to 8710760 26 - TSS region transcription start site region 133680
Gm31340 15 8711026 to 8864483 153457 + lncRNA gene predicted gene, 31340
Tssr130599 15 8832279 to 8832293 14 + TSS region transcription start site region 130599
Tssr130600 15 8832321 to 8832333 12 + TSS region transcription start site region 130600
Tssr130601 15 8838067 to 8838082 15 + TSS region transcription start site region 130601
Tssr130602 15 8914095 to 8914115 20 + TSS region transcription start site region 130602
Gm5043 15 8914484 to 8915303 819 + pseudogene predicted gene 5043
Gm5210 15 8917798 to 8929171 11373 - pseudogene predicted gene 5210
Tssr130603 15 8967929 to 8967936 7 + TSS region transcription start site region 130603
Tssr130604 15 8967943 to 8967960 17 + TSS region transcription start site region 130604
Ranbp3l 15 8967949 to 9067335 99386 + protein coding gene RAN binding protein 3-like
Tssr130605 15 8967963 to 8967982 19 + TSS region transcription start site region 130605
Tssr130606 15 8967996 to 8968011 15 + TSS region transcription start site region 130606
Tssr130607 15 8968288 to 8968293 5 + TSS region transcription start site region 130607
Tssr130608 15 8968319 to 8968368 49 + TSS region transcription start site region 130608
Tssr130609 15 8968389 to 8968392 3 + TSS region transcription start site region 130609
A430110A21Rik 15 8993330 to 8994478 1148 unclassified gene RIKEN cDNA A430110A21 gene
Gm46511 15 9009205 to 9012856 3651 - lncRNA gene predicted gene, 46511
Cpgi6938 15 9062941 to 9063115 174 CpG island CpG island 6938
Cpgi6939 15 9070750 to 9072328 1578 CpG island CpG island 6939
Tssr130610 15 9071252 to 9071273 21 + TSS region transcription start site region 130610
Nadk2 15 9071260 to 9110496 39236 + protein coding gene NAD kinase 2, mitochondrial
Tssr130611 15 9071289 to 9071304 15 + TSS region transcription start site region 130611
Tssr130612 15 9071327 to 9071340 13 + TSS region transcription start site region 130612
Tssr130613 15 9071393 to 9071471 78 + TSS region transcription start site region 130613
Tssr130614 15 9071612 to 9071621 9 + TSS region transcription start site region 130614
Tssr130615 15 9071624 to 9071635 11 + TSS region transcription start site region 130615
Tssr130616 15 9071649 to 9071724 75 + TSS region transcription start site region 130616
Tssr130617 15 9072921 to 9072964 43 + TSS region transcription start site region 130617
Tssr130618 15 9073024 to 9073038 14 + TSS region transcription start site region 130618
Tssr130619 15 9073183 to 9073187 4 + TSS region transcription start site region 130619
Tssr130620 15 9092205 to 9092213 8 + TSS region transcription start site region 130620
Tssr130621 15 9092224 to 9092234 10 + TSS region transcription start site region 130621
Tssr130622 15 9092239 to 9092243 4 + TSS region transcription start site region 130622
Skp2 15 9111985 to 9155425 43440 - protein coding gene S-phase kinase-associated protein 2 (p45)
Tssr133681 15 9136119 to 9136123 4 - TSS region transcription start site region 133681
Cpgi6940 15 9140238 to 9141202 964 CpG island CpG island 6940
Tssr133682 15 9140316 to 9140369 53 - TSS region transcription start site region 133682
Tssr133683 15 9140374 to 9140388 14 - TSS region transcription start site region 133683
Tssr130623 15 9140527 to 9140577 50 + TSS region transcription start site region 130623
Lmbrd2 15 9140530 to 9197845 57315 + protein coding gene LMBR1 domain containing 2
Tssr4547 15 9140598 to 9140610 12 + TSS region transcription start site region 4547
Tssr133684 15 9155336 to 9155341 5 - TSS region transcription start site region 133684
Tssr4548 15 9155343 to 9155350 7 - TSS region transcription start site region 4548
Tssr133685 15 9155354 to 9155359 5 - TSS region transcription start site region 133685
Tssr133686 15 9155360 to 9155378 18 - TSS region transcription start site region 133686
Tssr133687 15 9155381 to 9155398 17 - TSS region transcription start site region 133687
Tssr133688 15 9155405 to 9155408 3 - TSS region transcription start site region 133688
Tssr133689 15 9155413 to 9155416 3 - TSS region transcription start site region 133689
Tssr133690 15 9155422 to 9155423 1 - TSS region transcription start site region 133690
Tssr130624 15 9155514 to 9155537 23 + TSS region transcription start site region 130624
6720484C15Rik 15 9180603 to 9181001 398 unclassified gene RIKEN cDNA 6720484C15 gene
3110076C19Rik 15 9181136 to 9181699 563 unclassified gene RIKEN cDNA 3110076C19 gene
Tssr130625 15 9186245 to 9186250 5 + TSS region transcription start site region 130625
Tssr130626 15 9186262 to 9186273 11 + TSS region transcription start site region 130626
Tssr130627 15 9186288 to 9186301 13 + TSS region transcription start site region 130627
D15Mit248 15 9193934 to 9194081 147 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology-248
Tssr130628 15 9197031 to 9197060 29 + TSS region transcription start site region 130628
3110073H01Rik 15 9199819 to 9202482 2663 unclassified gene RIKEN cDNA 3110073H01 gene
Tssr130629 15 9203658 to 9203660 2 + TSS region transcription start site region 130629
Gm8139 15 9250522 to 9261327 10805 - pseudogene predicted gene 8139
D15Mit175.3 15 9272838 to 9272991 153 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 175.3
Bpq31 15 9272936 to 9273109 173 QTL blood pressure QTL 31
D15Mit175 15 9272936 to 9273109 173 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 175
Ugt3a1 15 9279822 to 9315038 35216 + protein coding gene UDP glycosyltransferases 3 family, polypeptide A1
Tssr130630 15 9279841 to 9279865 24 + TSS region transcription start site region 130630
Tssr130631 15 9279872 to 9279881 9 + TSS region transcription start site region 130631
Gm2360 15 9318959 to 9322231 3272 + pseudogene predicted gene 2360
Ugt3a2 15 9335551 to 9370955 35404 + protein coding gene UDP glycosyltransferases 3 family, polypeptide A2
Tssr130632 15 9335565 to 9335623 58 + TSS region transcription start site region 130632
Tssr133691 15 9357073 to 9357077 4 - TSS region transcription start site region 133691
Tssr130633 15 9370333 to 9370344 11 + TSS region transcription start site region 130633
Tssr130634 15 9370380 to 9370391 11 + TSS region transcription start site region 130634
Tssr130635 15 9370397 to 9370407 10 + TSS region transcription start site region 130635
Tssr130636 15 9370697 to 9370704 7 + TSS region transcription start site region 130636
Gm5219 15 9424179 to 9431334 7155 + pseudogene predicted gene 5219
Capsl 15 9436028 to 9466038 30010 + protein coding gene calcyphosine-like
Tssr130637 15 9436039 to 9436083 44 + TSS region transcription start site region 130637
Tssr130638 15 9436085 to 9436103 18 + TSS region transcription start site region 130638
Tssr130639 15 9436108 to 9436125 17 + TSS region transcription start site region 130639
Tssr130640 15 9463496 to 9463516 20 + TSS region transcription start site region 130640
Tssr133692 15 9469445 to 9469456 11 - TSS region transcription start site region 133692
Il7r 15 9506159 to 9529935 23776 - protein coding gene interleukin 7 receptor
Tssr133693 15 9506750 to 9506762 12 - TSS region transcription start site region 133693
Tssr133694 15 9507113 to 9507125 12 - TSS region transcription start site region 133694
Tssr133695 15 9507436 to 9507448 12 - TSS region transcription start site region 133695
Tssr133696 15 9507776 to 9507804 28 - TSS region transcription start site region 133696
Tssr133697 15 9508757 to 9508786 29 - TSS region transcription start site region 133697
D15Mit264 15 9509776 to 9509925 149 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 264
Tssr133698 15 9516462 to 9516493 31 - TSS region transcription start site region 133698
Tssr133699 15 9524092 to 9524104 12 - TSS region transcription start site region 133699
Tssr133700 15 9524129 to 9524135 6 - TSS region transcription start site region 133700
Tssr130641 15 9524314 to 9524318 4 + TSS region transcription start site region 130641
Tssr130642 15 9524329 to 9524340 11 + TSS region transcription start site region 130642
Tssr130643 15 9524347 to 9524358 11 + TSS region transcription start site region 130643
Tssr130644 15 9525110 to 9525154 44 + TSS region transcription start site region 130644
Tssr130645 15 9527068 to 9527076 8 + TSS region transcription start site region 130645
Tssr133701 15 9528043 to 9528052 9 - TSS region transcription start site region 133701
Tssr133702 15 9528078 to 9528088 10 - TSS region transcription start site region 133702
Tssr130646 15 9528472 to 9528483 11 + TSS region transcription start site region 130646
Tssr130647 15 9528490 to 9528503 13 + TSS region transcription start site region 130647
Tssr130648 15 9528527 to 9528540 13 + TSS region transcription start site region 130648
Tssr133703 15 9529697 to 9529708 11 - TSS region transcription start site region 133703
Tssr133704 15 9529738 to 9529772 34 - TSS region transcription start site region 133704
Tssr133705 15 9529813 to 9529846 33 - TSS region transcription start site region 133705
Tssr133706 15 9529850 to 9529865 15 - TSS region transcription start site region 133706
Tssr133707 15 9529868 to 9529881 13 - TSS region transcription start site region 133707
Tssr133708 15 9530032 to 9530036 4 - TSS region transcription start site region 133708
Tssr133709 15 9530134 to 9530185 51 - TSS region transcription start site region 133709
Tssr133710 15 9530311 to 9530322 11 - TSS region transcription start site region 133710
Tssr130649 15 9533573 to 9533582 9 + TSS region transcription start site region 130649
Tssr130650 15 9533598 to 9533627 29 + TSS region transcription start site region 130650
Tssr133711 15 9535350 to 9535362 12 - TSS region transcription start site region 133711
Tssr130651 15 9547825 to 9547831 6 + TSS region transcription start site region 130651
Tssr130652 15 9554562 to 9554581 19 + TSS region transcription start site region 130652
Tssr130653 15 9554586 to 9554597 11 + TSS region transcription start site region 130653
Tssr133712 15 9555948 to 9555964 16 - TSS region transcription start site region 133712
Tssr130654 15 9556203 to 9556218 15 + TSS region transcription start site region 130654
Tssr4549 15 9567302 to 9567307 5 + TSS region transcription start site region 4549
Tssr133713 15 9572551 to 9572566 15 - TSS region transcription start site region 133713
Spef2 15 9578193 to 9748868 170675 - protein coding gene sperm flagellar 2
Tssr133714 15 9580622 to 9580633 11 - TSS region transcription start site region 133714
Tssr133715 15 9580646 to 9580655 9 - TSS region transcription start site region 133715
Shali3 15 43448484 to 9272936 -34175548 QTL survival time to hyperoxic acute lung injury 3
Habiir5 15 43448484 to 9272936 -34175548 QTL hyperoxic acute lung injury imprinted region 5
Ssrq2 15 56323454 to 9272936 -47050518 QTL stress response QTL 2
Rapop5 15 79590561 to 9272936 -70317625 QTL radiation-induced apoptosis 5