Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:83683885-84793887

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139 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scube1 15 83604999 to 83725021 120022 - protein coding gene signal peptide, CUB domain, EGF-like 1
Cpgi7452 15 83724059 to 83725970 1911 CpG island CpG island 7452
Tssr135693 15 83724979 to 83725044 65 - TSS region transcription start site region 135693
Gm33324 15 83751856 to 83757018 5162 - lncRNA gene predicted gene, 33324
D15Mit33 15 83755739 to 83755886 147 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 33
Tssr132434 15 83772052 to 83772057 5 + TSS region transcription start site region 132434
Cpgi7453 15 83779218 to 83780742 1524 CpG island CpG island 7453
Mpped1 15 83779472 to 83858487 79015 + protein coding gene metallophosphoesterase domain containing 1
Tssr132435 15 83779975 to 83779988 13 + TSS region transcription start site region 132435
Tssr132436 15 83779999 to 83780033 34 + TSS region transcription start site region 132436
Tssr132437 15 83780034 to 83780086 52 + TSS region transcription start site region 132437
Tssr132438 15 83784326 to 83784348 22 + TSS region transcription start site region 132438
Tssr132439 15 83788944 to 83788981 37 + TSS region transcription start site region 132439
Tssr4673 15 83790437 to 83790441 4 + TSS region transcription start site region 4673
Tssr132440 15 83792142 to 83792153 11 + TSS region transcription start site region 132440
Gm41370 15 83847303 to 83856241 8938 - lncRNA gene predicted gene, 41370
Gm41372 15 83859169 to 83867632 8463 + lncRNA gene predicted gene, 41372
Efcab6 15 83866712 to 84065379 198667 - protein coding gene EF-hand calcium binding domain 6
D15Mit215 15 83890960 to 83891133 173 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 215
Tssr135694 15 83919364 to 83919387 23 - TSS region transcription start site region 135694
Tssr135695 15 83919392 to 83919399 7 - TSS region transcription start site region 135695
Tssr135696 15 83920171 to 83920189 18 - TSS region transcription start site region 135696
Tssr135697 15 83936074 to 83936081 7 - TSS region transcription start site region 135697
Tssr135698 15 83936082 to 83936104 22 - TSS region transcription start site region 135698
Cpgi7454 15 83998113 to 83998495 382 CpG island CpG island 7454
Rpl31-ps22 15 84030339 to 84030675 336 + pseudogene ribosomal protein L31, pseudogene 22
Tssr135699 15 84055071 to 84055099 28 - TSS region transcription start site region 135699
Tssr135700 15 84055103 to 84055110 7 - TSS region transcription start site region 135700
4933433M23Rik 15 84055207 to 84056590 1383 unclassified gene RIKEN cDNA 4933433M23 gene
Cpgi7455 15 84064939 to 84065475 536 CpG island CpG island 7455
Tssr135701 15 84065329 to 84065364 35 - TSS region transcription start site region 135701
Sult4a1 15 84076097 to 84105754 29657 - protein coding gene sulfotransferase family 4A, member 1
Tssr135702 15 84090643 to 84090672 29 - TSS region transcription start site region 135702
Cpgi7456 15 84104668 to 84106139 1471 CpG island CpG island 7456
Tssr135703 15 84105599 to 84105658 59 - TSS region transcription start site region 135703
Tssr135704 15 84105662 to 84105674 12 - TSS region transcription start site region 135704
Gm46526 15 84106658 to 84108851 2193 + lincRNA gene predicted gene, 46526
Pnpla5 15 84112356 to 84123175 10819 - protein coding gene patatin-like phospholipase domain containing 5
Tssr132441 15 84123116 to 84123117 1 + TSS region transcription start site region 132441
Tssr135705 15 84123174 to 84123203 29 - TSS region transcription start site region 135705
Gm33432 15 84127278 to 84133211 5933 + lincRNA gene predicted gene, 33432
Tssr132442 15 84127300 to 84127320 20 + TSS region transcription start site region 132442
Tssr132443 15 84127323 to 84127334 11 + TSS region transcription start site region 132443
Tssr132444 15 84127357 to 84127366 9 + TSS region transcription start site region 132444
Tssr135706 15 84132035 to 84132040 5 - TSS region transcription start site region 135706
Tssr135707 15 84132063 to 84132077 14 - TSS region transcription start site region 135707
Gm33530 15 84164859 to 84165830 971 - lncRNA gene predicted gene, 33530
Cpgi7457 15 84167622 to 84168443 821 CpG island CpG island 7457
Tssr132445 15 84167761 to 84167772 11 + TSS region transcription start site region 132445
Tssr132446 15 84167804 to 84167824 20 + TSS region transcription start site region 132446
Tssr132447 15 84167827 to 84167843 16 + TSS region transcription start site region 132447
Pnpla3 15 84167837 to 84187236 19399 + protein coding gene patatin-like phospholipase domain containing 3
Mir6392 15 84168270 to 84168377 107 + miRNA gene microRNA 6392
Gm49513 15 84181914 to 84195881 13967 + unclassified non-coding RNA gene predicted gene, 49513
Gm20369 15 84182709 to 84183015 306 - pseudogene predicted gene, 20369
Tssr135708 15 84183058 to 84183074 16 - TSS region transcription start site region 135708
Tssr135709 15 84185064 to 84185105 41 - TSS region transcription start site region 135709
Tssr135710 15 84185152 to 84185156 4 - TSS region transcription start site region 135710
Tssr135711 15 84185165 to 84185176 11 - TSS region transcription start site region 135711
Cpgi7458 15 84191910 to 84192665 755 CpG island CpG island 7458
Tssr135712 15 84192106 to 84192157 51 - TSS region transcription start site region 135712
Tssr132448 15 84192223 to 84192260 37 + TSS region transcription start site region 132448
Samm50 15 84192233 to 84214303 22070 + protein coding gene SAMM50 sorting and assembly machinery component
Tssr132449 15 84192261 to 84192286 25 + TSS region transcription start site region 132449
Tssr132450 15 84192289 to 84192305 16 + TSS region transcription start site region 132450
Tssr135713 15 84217176 to 84217196 20 - TSS region transcription start site region 135713
Cpgi7459 15 84231631 to 84232518 887 CpG island CpG island 7459
Tssr132451 15 84232030 to 84232041 11 + TSS region transcription start site region 132451
Parvb 15 84232043 to 84315609 83566 + protein coding gene parvin, beta
Tssr132452 15 84232050 to 84232076 26 + TSS region transcription start site region 132452
Tssr132453 15 84232093 to 84232109 16 + TSS region transcription start site region 132453
Gm33723 15 84237496 to 84240185 2689 - lncRNA gene predicted gene, 33723
Tssr135714 15 84238885 to 84238887 2 - TSS region transcription start site region 135714
Tssr135715 15 84239925 to 84239943 18 - TSS region transcription start site region 135715
Tssr132454 15 84257127 to 84257151 24 + TSS region transcription start site region 132454
Tssr132455 15 84257161 to 84257172 11 + TSS region transcription start site region 132455
Tssr132456 15 84298142 to 84298145 3 + TSS region transcription start site region 132456
Tssr4674 15 84301462 to 84301468 6 + TSS region transcription start site region 4674
Tssr132457 15 84321931 to 84321968 37 + TSS region transcription start site region 132457
Gm22890 15 84323209 to 84323352 143 - snoRNA gene predicted gene, 22890
Parvg 15 84324026 to 84342978 18952 + protein coding gene parvin, gamma
Tssr132458 15 84324192 to 84324204 12 + TSS region transcription start site region 132458
Tssr132459 15 84324440 to 84324463 23 + TSS region transcription start site region 132459
Tssr132460 15 84324466 to 84324483 17 + TSS region transcription start site region 132460
Tssr132461 15 84324716 to 84324723 7 + TSS region transcription start site region 132461
Tssr132462 15 84324725 to 84324777 52 + TSS region transcription start site region 132462
Tssr132463 15 84324780 to 84324811 31 + TSS region transcription start site region 132463
Tssr132464 15 84327123 to 84327133 10 + TSS region transcription start site region 132464
Gm5214 15 84346202 to 84346780 578 - pseudogene predicted gene 5214
Shisal1 15 84379203 to 84447097 67894 - protein coding gene shisa like 1
D15Mit107 15 84386497 to 84386646 149 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 107
Pstc3 15 84386497 to 84386646 149 QTL periosteal circumference 3
Tssr132465 15 84412670 to 84412671 1 + TSS region transcription start site region 132465
Gm46527 15 84430181 to 84441748 11567 + protein coding gene predicted gene, 46527
Tssr135716 15 84436295 to 84436298 3 - TSS region transcription start site region 135716
Tssr135717 15 84444288 to 84444315 27 - TSS region transcription start site region 135717
Tssr135718 15 84444319 to 84444330 11 - TSS region transcription start site region 135718
Gm33830 15 84444746 to 84463567 18821 + lncRNA gene predicted gene, 33830
Cpgi7460 15 84445775 to 84446749 974 CpG island CpG island 7460
Tssr132466 15 84446053 to 84446064 11 + TSS region transcription start site region 132466
Tssr135719 15 84446537 to 84446581 44 - TSS region transcription start site region 135719
Tssr135720 15 84447019 to 84447034 15 - TSS region transcription start site region 135720
Tssr135721 15 84447037 to 84447065 28 - TSS region transcription start site region 135721
Cpgi7461 15 84450615 to 84450886 271 CpG island CpG island 7461
Tssr135722 15 84482843 to 84482865 22 - TSS region transcription start site region 135722
Gm33966 15 84509318 to 84510600 1282 - lncRNA gene predicted gene, 33966
Gm34027 15 84538857 to 84550562 11705 + lncRNA gene predicted gene, 34027
Tssr132467 15 84538946 to 84538955 9 + TSS region transcription start site region 132467
Rtl6 15 84553398 to 84557823 4425 - protein coding gene retrotransposon Gag like 6
Cpgi7462 15 84556891 to 84557945 1054 CpG island CpG island 7462
Tssr135723 15 84557587 to 84557639 52 - TSS region transcription start site region 135723
Tssr135724 15 84557754 to 84557773 19 - TSS region transcription start site region 135724
Tssr135725 15 84557776 to 84557875 99 - TSS region transcription start site region 135725
Gm34095 15 84571730 to 84577117 5387 - lincRNA gene predicted gene, 34095
4933416A02Rik 15 84579523 to 84581440 1917 unclassified gene RIKEN cDNA 4933416A02 gene
Tssr132468 15 84616070 to 84616071 1 + TSS region transcription start site region 132468
Gm34201 15 84617422 to 84627439 10017 - lncRNA gene predicted gene, 34201
Cpgi7463 15 84663001 to 84663968 967 CpG island CpG island 7463
Tssr132469 15 84663188 to 84663234 46 + TSS region transcription start site region 132469
Tssr132470 15 84669565 to 84669609 44 + TSS region transcription start site region 132470
Prr5 15 84669620 to 84703673 34053 + protein coding gene proline rich 5 (renal)
Tssr132471 15 84669645 to 84669647 2 + TSS region transcription start site region 132471
Tssr132472 15 84672862 to 84672866 4 + TSS region transcription start site region 132472
Tssr135726 15 84675188 to 84675199 11 - TSS region transcription start site region 135726
Cpgi7464 15 84680564 to 84681975 1411 CpG island CpG island 7464
Tssr132473 15 84680974 to 84681044 70 + TSS region transcription start site region 132473
Gm41374 15 84708698 to 84713818 5120 - lncRNA gene predicted gene, 41374
Gm20556 15 84714629 to 84720266 5637 - lincRNA gene predicted gene, 20556
Cpgi7465 15 84714817 to 84715063 246 CpG island CpG island 7465
D15Mit72 15 84715369 to 84715511 142 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 72
Cpgi7466 15 84719562 to 84720177 615 CpG island CpG island 7466
Arhgap8 15 84720052 to 84772207 52155 + protein coding gene Rho GTPase activating protein 8
Tssr132474 15 84720053 to 84720092 39 + TSS region transcription start site region 132474
Tssr132475 15 84720093 to 84720104 11 + TSS region transcription start site region 132475
Tssr132476 15 84765691 to 84765707 16 + TSS region transcription start site region 132476
Tssr132477 15 84766874 to 84766882 8 + TSS region transcription start site region 132477
Cpgi7467 15 84784867 to 84785207 340 CpG island CpG island 7467
Phf21b 15 84785381 to 84856049 70668 - protein coding gene PHD finger protein 21B
Cpgi7468 15 84785622 to 84786193 571 CpG island CpG island 7468