Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:82908229-83158240

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tcf20 15 82808436 to 82987872 179436 - protein coding gene transcription factor 20
Cpgi7424 15 82911485 to 82912287 802 CpG island CpG island 7424
Tssr135596 15 82912143 to 82912190 47 - TSS region transcription start site region 135596
Cpgi7425 15 82917450 to 82917693 243 CpG island CpG island 7425
Cpgi7426 15 82938219 to 82938418 199 CpG island CpG island 7426
Cpgi7427 15 82952350 to 82952631 281 CpG island CpG island 7427
Mir3080 15 82959218 to 82959296 78 - miRNA gene microRNA 3080
Cpgi7428 15 82961057 to 82961413 356 CpG island CpG island 7428
Cpgi7430 15 82962825 to 82964623 1798 CpG island CpG island 7430
Tssr135597 15 82963748 to 82963765 17 - TSS region transcription start site region 135597
Tssr135598 15 82963780 to 82963865 85 - TSS region transcription start site region 135598
Cpgi7431 15 82968393 to 82968754 361 CpG island CpG island 7431
Gm29019 15 82982725 to 82987830 5105 - lincRNA gene predicted gene 29019
AW121686 15 82982870 to 82989134 6264 + lincRNA gene expressed sequence AW121686
Cpgi7432 15 82987108 to 82988010 902 CpG island CpG island 7432
Tssr135599 15 82987678 to 82987690 12 - TSS region transcription start site region 135599
Tssr135600 15 82987693 to 82987705 12 - TSS region transcription start site region 135600
Tssr135601 15 82987833 to 82987866 33 - TSS region transcription start site region 135601
Tssr135602 15 82987876 to 82987890 14 - TSS region transcription start site region 135602
Tssr135603 15 82993962 to 82993965 3 - TSS region transcription start site region 135603
Tssr135604 15 82995051 to 82995053 2 - TSS region transcription start site region 135604
Nfam1 15 82996736 to 83033397 36661 - protein coding gene Nfat activating molecule with ITAM motif 1
Tssr135605 15 82998574 to 82998610 36 - TSS region transcription start site region 135605
Tssr135606 15 82998916 to 82998930 14 - TSS region transcription start site region 135606
Tssr135607 15 82998931 to 82998953 22 - TSS region transcription start site region 135607
Tssr135608 15 82998988 to 82999023 35 - TSS region transcription start site region 135608
Tssr135609 15 82999054 to 82999088 34 - TSS region transcription start site region 135609
Tssr135610 15 83004964 to 83004992 28 - TSS region transcription start site region 135610
Tssr135611 15 83030946 to 83030958 12 - TSS region transcription start site region 135611
Tssr135612 15 83031107 to 83031111 4 - TSS region transcription start site region 135612
Tssr135613 15 83033229 to 83033240 11 - TSS region transcription start site region 135613
Tssr135614 15 83033252 to 83033274 22 - TSS region transcription start site region 135614
Tssr135615 15 83033294 to 83033312 18 - TSS region transcription start site region 135615
Tssr132405 15 83033386 to 83033397 11 + TSS region transcription start site region 132405
Tssr132406 15 83033406 to 83033480 74 + TSS region transcription start site region 132406
Gm32620 15 83033437 to 83038590 5153 + lncRNA gene predicted gene, 32620
Cpgi7433 15 83034652 to 83035007 355 CpG island CpG island 7433
Tssr132407 15 83035491 to 83035496 5 + TSS region transcription start site region 132407
Tssr135616 15 83052874 to 83052888 14 - TSS region transcription start site region 135616
Cpgi7434 15 83056601 to 83056818 217 CpG island CpG island 7434
Gm41366 15 83075676 to 83082188 6512 - lncRNA gene predicted gene, 41366
Cpgi7435 15 83075939 to 83076248 309 CpG island CpG island 7435
D15Mit134 15 83079860 to 83080005 145 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 134
Pitm5 15 83079860 to 87170187 4090327 QTL prion incubation time 5
Cpgi7436 15 83089155 to 83089568 413 CpG island CpG island 7436
Cpgi7437 15 83099851 to 83100491 640 CpG island CpG island 7437
Serhl 15 83100192 to 83116675 16483 + protein coding gene serine hydrolase-like
Tssr132408 15 83100201 to 83100210 9 + TSS region transcription start site region 132408
Tssr132409 15 83100281 to 83100303 22 + TSS region transcription start site region 132409
Tssr132410 15 83100306 to 83100318 12 + TSS region transcription start site region 132410
Gm17206 15 83102072 to 83105929 3857 - antisense lncRNA gene predicted gene 17206
Rrp7a 15 83115846 to 83122831 6985 - protein coding gene ribosomal RNA processing 7 homolog A (S. cerevisiae)
Tssr132411 15 83121799 to 83121811 12 + TSS region transcription start site region 132411
Tssr135617 15 83122088 to 83122131 43 - TSS region transcription start site region 135617
Cpgi7438 15 83122141 to 83122944 803 CpG island CpG island 7438
Tssr132412 15 83122213 to 83122261 48 + TSS region transcription start site region 132412
Tssr135618 15 83122733 to 83122746 13 - TSS region transcription start site region 135618
Tssr135619 15 83122756 to 83122782 26 - TSS region transcription start site region 135619
Poldip3 15 83125976 to 83149373 23397 - protein coding gene polymerase (DNA-directed), delta interacting protein 3
Tssr135620 15 83127462 to 83127490 28 - TSS region transcription start site region 135620
Tssr135621 15 83127592 to 83127640 48 - TSS region transcription start site region 135621
Tssr135622 15 83127995 to 83128008 13 - TSS region transcription start site region 135622
Tssr135623 15 83133279 to 83133311 32 - TSS region transcription start site region 135623
Tssr135624 15 83138182 to 83138215 33 - TSS region transcription start site region 135624
Tssr132413 15 83148263 to 83148266 3 + TSS region transcription start site region 132413
Cpgi7439 15 83148539 to 83149607 1068 CpG island CpG island 7439
Tssr135625 15 83149023 to 83149056 33 - TSS region transcription start site region 135625
Tssr135626 15 83149270 to 83149304 34 - TSS region transcription start site region 135626
Tssr135627 15 83149307 to 83149350 43 - TSS region transcription start site region 135627
Tssr135628 15 83149357 to 83149364 7 - TSS region transcription start site region 135628
Tssr132414 15 83149642 to 83149647 5 + TSS region transcription start site region 132414
Rnu12 15 83149645 to 83149794 149 + snRNA gene RNA U12, small nuclear
Cyb5r3 15 83153495 to 83172208 18713 - protein coding gene cytochrome b5 reductase 3
Tssr132415 15 83154202 to 83154221 19 + TSS region transcription start site region 132415
Tssr135629 15 83154261 to 83154324 63 - TSS region transcription start site region 135629
Tssr135630 15 83154325 to 83154378 53 - TSS region transcription start site region 135630
Tssr135631 15 83154391 to 83154402 11 - TSS region transcription start site region 135631
Tssr135632 15 83154416 to 83154435 19 - TSS region transcription start site region 135632
Tssr135633 15 83154475 to 83154495 20 - TSS region transcription start site region 135633
Tssr135634 15 83154522 to 83154547 25 - TSS region transcription start site region 135634
Tssr135635 15 83154580 to 83154590 10 - TSS region transcription start site region 135635
Tssr135636 15 83154671 to 83154680 9 - TSS region transcription start site region 135636