Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:82868858-83448894

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157 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tcf20 15 82808436 to 82987872 179436 - protein coding gene transcription factor 20
Tssr135589 15 82870836 to 82870842 6 - TSS region transcription start site region 135589
Tssr135590 15 82884385 to 82884388 3 - TSS region transcription start site region 135590
Tssr135591 15 82886703 to 82886707 4 - TSS region transcription start site region 135591
Tssr135592 15 82889201 to 82889203 2 - TSS region transcription start site region 135592
Tbrg3 15 82890483 to 82898461 7978 - lncRNA gene transforming growth factor beta regulated gene 3
Cpgi7423 15 82898707 to 82900485 1778 CpG island CpG island 7423
Tssr132402 15 82899018 to 82899035 17 + TSS region transcription start site region 132402
Tssr132403 15 82899039 to 82899058 19 + TSS region transcription start site region 132403
Tssr132404 15 82899060 to 82899082 22 + TSS region transcription start site region 132404
Gm20324 15 82899080 to 82905816 6736 + antisense lncRNA gene predicted gene, 20324
Tssr135593 15 82899741 to 82899776 35 - TSS region transcription start site region 135593
Tssr135594 15 82899779 to 82899823 44 - TSS region transcription start site region 135594
Tssr135595 15 82899834 to 82899845 11 - TSS region transcription start site region 135595
Cpgi7424 15 82911485 to 82912287 802 CpG island CpG island 7424
Tssr135596 15 82912143 to 82912190 47 - TSS region transcription start site region 135596
Cpgi7425 15 82917450 to 82917693 243 CpG island CpG island 7425
Cpgi7426 15 82938219 to 82938418 199 CpG island CpG island 7426
Cpgi7427 15 82952350 to 82952631 281 CpG island CpG island 7427
Mir3080 15 82959218 to 82959296 78 - miRNA gene microRNA 3080
Cpgi7428 15 82961057 to 82961413 356 CpG island CpG island 7428
Cpgi7430 15 82962825 to 82964623 1798 CpG island CpG island 7430
Tssr135597 15 82963748 to 82963765 17 - TSS region transcription start site region 135597
Tssr135598 15 82963780 to 82963865 85 - TSS region transcription start site region 135598
Cpgi7431 15 82968393 to 82968754 361 CpG island CpG island 7431
Gm29019 15 82982725 to 82987830 5105 - lincRNA gene predicted gene 29019
AW121686 15 82982870 to 82989134 6264 + lincRNA gene expressed sequence AW121686
Cpgi7432 15 82987108 to 82988010 902 CpG island CpG island 7432
Tssr135599 15 82987678 to 82987690 12 - TSS region transcription start site region 135599
Tssr135600 15 82987693 to 82987705 12 - TSS region transcription start site region 135600
Tssr135601 15 82987833 to 82987866 33 - TSS region transcription start site region 135601
Tssr135602 15 82987876 to 82987890 14 - TSS region transcription start site region 135602
Tssr135603 15 82993962 to 82993965 3 - TSS region transcription start site region 135603
Tssr135604 15 82995051 to 82995053 2 - TSS region transcription start site region 135604
Nfam1 15 82996736 to 83033397 36661 - protein coding gene Nfat activating molecule with ITAM motif 1
Tssr135605 15 82998574 to 82998610 36 - TSS region transcription start site region 135605
Tssr135606 15 82998916 to 82998930 14 - TSS region transcription start site region 135606
Tssr135607 15 82998931 to 82998953 22 - TSS region transcription start site region 135607
Tssr135608 15 82998988 to 82999023 35 - TSS region transcription start site region 135608
Tssr135609 15 82999054 to 82999088 34 - TSS region transcription start site region 135609
Tssr135610 15 83004964 to 83004992 28 - TSS region transcription start site region 135610
Tssr135611 15 83030946 to 83030958 12 - TSS region transcription start site region 135611
Tssr135612 15 83031107 to 83031111 4 - TSS region transcription start site region 135612
Tssr135613 15 83033229 to 83033240 11 - TSS region transcription start site region 135613
Tssr135614 15 83033252 to 83033274 22 - TSS region transcription start site region 135614
Tssr135615 15 83033294 to 83033312 18 - TSS region transcription start site region 135615
Tssr132405 15 83033386 to 83033397 11 + TSS region transcription start site region 132405
Tssr132406 15 83033406 to 83033480 74 + TSS region transcription start site region 132406
Gm32620 15 83033437 to 83038590 5153 + lncRNA gene predicted gene, 32620
Cpgi7433 15 83034652 to 83035007 355 CpG island CpG island 7433
Tssr132407 15 83035491 to 83035496 5 + TSS region transcription start site region 132407
Tssr135616 15 83052874 to 83052888 14 - TSS region transcription start site region 135616
Cpgi7434 15 83056601 to 83056818 217 CpG island CpG island 7434
Gm41366 15 83075676 to 83082188 6512 - lncRNA gene predicted gene, 41366
Cpgi7435 15 83075939 to 83076248 309 CpG island CpG island 7435
Pitm5 15 83079860 to 87170187 4090327 QTL prion incubation time 5
D15Mit134 15 83079860 to 83080005 145 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 134
Cpgi7436 15 83089155 to 83089568 413 CpG island CpG island 7436
Cpgi7437 15 83099851 to 83100491 640 CpG island CpG island 7437
Serhl 15 83100192 to 83116675 16483 + protein coding gene serine hydrolase-like
Tssr132408 15 83100201 to 83100210 9 + TSS region transcription start site region 132408
Tssr132409 15 83100281 to 83100303 22 + TSS region transcription start site region 132409
Tssr132410 15 83100306 to 83100318 12 + TSS region transcription start site region 132410
Gm17206 15 83102072 to 83105929 3857 - antisense lncRNA gene predicted gene 17206
Rrp7a 15 83115846 to 83122831 6985 - protein coding gene ribosomal RNA processing 7 homolog A (S. cerevisiae)
Tssr132411 15 83121799 to 83121811 12 + TSS region transcription start site region 132411
Tssr135617 15 83122088 to 83122131 43 - TSS region transcription start site region 135617
Cpgi7438 15 83122141 to 83122944 803 CpG island CpG island 7438
Tssr132412 15 83122213 to 83122261 48 + TSS region transcription start site region 132412
Tssr135618 15 83122733 to 83122746 13 - TSS region transcription start site region 135618
Tssr135619 15 83122756 to 83122782 26 - TSS region transcription start site region 135619
Poldip3 15 83125976 to 83149373 23397 - protein coding gene polymerase (DNA-directed), delta interacting protein 3
Tssr135620 15 83127462 to 83127490 28 - TSS region transcription start site region 135620
Tssr135621 15 83127592 to 83127640 48 - TSS region transcription start site region 135621
Tssr135622 15 83127995 to 83128008 13 - TSS region transcription start site region 135622
Tssr135623 15 83133279 to 83133311 32 - TSS region transcription start site region 135623
Tssr135624 15 83138182 to 83138215 33 - TSS region transcription start site region 135624
Tssr132413 15 83148263 to 83148266 3 + TSS region transcription start site region 132413
Cpgi7439 15 83148539 to 83149607 1068 CpG island CpG island 7439
Tssr135625 15 83149023 to 83149056 33 - TSS region transcription start site region 135625
Tssr135626 15 83149270 to 83149304 34 - TSS region transcription start site region 135626
Tssr135627 15 83149307 to 83149350 43 - TSS region transcription start site region 135627
Tssr135628 15 83149357 to 83149364 7 - TSS region transcription start site region 135628
Tssr132414 15 83149642 to 83149647 5 + TSS region transcription start site region 132414
Rnu12 15 83149645 to 83149794 149 + snRNA gene RNA U12, small nuclear
Cyb5r3 15 83153495 to 83172208 18713 - protein coding gene cytochrome b5 reductase 3
Tssr132415 15 83154202 to 83154221 19 + TSS region transcription start site region 132415
Tssr135629 15 83154261 to 83154324 63 - TSS region transcription start site region 135629
Tssr135630 15 83154325 to 83154378 53 - TSS region transcription start site region 135630
Tssr135631 15 83154391 to 83154402 11 - TSS region transcription start site region 135631
Tssr135632 15 83154416 to 83154435 19 - TSS region transcription start site region 135632
Tssr135633 15 83154475 to 83154495 20 - TSS region transcription start site region 135633
Tssr135634 15 83154522 to 83154547 25 - TSS region transcription start site region 135634
Tssr135635 15 83154580 to 83154590 10 - TSS region transcription start site region 135635
Tssr135636 15 83154671 to 83154680 9 - TSS region transcription start site region 135636
Tssr135637 15 83158858 to 83158894 36 - TSS region transcription start site region 135637
Tssr135638 15 83158902 to 83158930 28 - TSS region transcription start site region 135638
Tssr135639 15 83160902 to 83160915 13 - TSS region transcription start site region 135639
Tssr135640 15 83162264 to 83162305 41 - TSS region transcription start site region 135640
Tssr132416 15 83166067 to 83166086 19 + TSS region transcription start site region 132416
Tssr135641 15 83166102 to 83166160 58 - TSS region transcription start site region 135641
Tssr135642 15 83166869 to 83166883 14 - TSS region transcription start site region 135642
Tssr135643 15 83170168 to 83170186 18 - TSS region transcription start site region 135643
Tssr135644 15 83170498 to 83170515 17 - TSS region transcription start site region 135644
Cpgi7440 15 83171568 to 83172829 1261 CpG island CpG island 7440
Tssr135645 15 83172166 to 83172207 41 - TSS region transcription start site region 135645
Tssr135646 15 83172212 to 83172235 23 - TSS region transcription start site region 135646
Tssr135647 15 83172237 to 83172248 11 - TSS region transcription start site region 135647
Tssr132417 15 83172310 to 83172406 96 + TSS region transcription start site region 132417
Gm49463 15 83172350 to 83174808 2458 + antisense lncRNA gene predicted gene, 49463
Tssr135648 15 83173007 to 83173023 16 - TSS region transcription start site region 135648
7530414M10Rik 15 83173196 to 83176445 3249 - lincRNA gene RIKEN cDNA 7530414M10 gene
Tssr135649 15 83174250 to 83174276 26 - TSS region transcription start site region 135649
Tssr132418 15 83220521 to 83220556 35 + TSS region transcription start site region 132418
A4galt 15 83226722 to 83251774 25052 - protein coding gene alpha 1,4-galactosyltransferase
Tssr135650 15 83237962 to 83237984 22 - TSS region transcription start site region 135650
Cpgi7441 15 83250993 to 83252347 1354 CpG island CpG island 7441
Tssr135651 15 83251720 to 83251736 16 - TSS region transcription start site region 135651
Gm41367 15 83255629 to 83257764 2135 - lncRNA gene predicted gene, 41367
Gm32886 15 83257948 to 83258097 149 - protein coding gene predicted gene, 32886
C130064B19Rik 15 83258659 to 83259523 864 - lncRNA gene RIKEN cDNA C130064B19 gene
Tssr135652 15 83265938 to 83265953 15 - TSS region transcription start site region 135652
Gm32788 15 83270951 to 83296786 25835 - lncRNA gene predicted gene, 32788
Arfgap3 15 83299739 to 83350247 50508 - protein coding gene ADP-ribosylation factor GTPase activating protein 3
Tssr135653 15 83313508 to 83313523 15 - TSS region transcription start site region 135653
Tssr135654 15 83313582 to 83313595 13 - TSS region transcription start site region 135654
Tssr132419 15 83316580 to 83316606 26 + TSS region transcription start site region 132419
Cpgi7442 15 83349670 to 83350687 1017 CpG island CpG island 7442
Tssr135655 15 83350151 to 83350262 111 - TSS region transcription start site region 135655
1700001L05Rik 15 83353847 to 83367282 13435 - lincRNA gene RIKEN cDNA 1700001L05 gene
Tssr135656 15 83355913 to 83355916 3 - TSS region transcription start site region 135656
Cpgi7443 15 83366759 to 83367627 868 CpG island CpG island 7443
Tssr135657 15 83366971 to 83366991 20 - TSS region transcription start site region 135657
Tssr135658 15 83367006 to 83367016 10 - TSS region transcription start site region 135658
Tssr135659 15 83367239 to 83367250 11 - TSS region transcription start site region 135659
Tssr135660 15 83367267 to 83367287 20 - TSS region transcription start site region 135660
Tssr135661 15 83367297 to 83367314 17 - TSS region transcription start site region 135661
Pacsin2 15 83375607 to 83464606 88999 - protein coding gene protein kinase C and casein kinase substrate in neurons 2
Tssr135662 15 83377337 to 83377356 19 - TSS region transcription start site region 135662
Tssr135663 15 83385777 to 83385795 18 - TSS region transcription start site region 135663
Gm41368 15 83386773 to 83392494 5721 + lncRNA gene predicted gene, 41368
Tssr132420 15 83389617 to 83389618 1 + TSS region transcription start site region 132420
Tssr135664 15 83393957 to 83393974 17 - TSS region transcription start site region 135664
Tssr132421 15 83394101 to 83394113 12 + TSS region transcription start site region 132421
Tssr132422 15 83394116 to 83394123 7 + TSS region transcription start site region 132422
1700082O11Rik 15 83394125 to 83394561 436 unclassified gene RIKEN cDNA 1700082O11 gene
C430045I18Rik 15 83397762 to 83398897 1135 unclassified gene RIKEN cDNA C430045I18 gene
Gm5417 15 83405626 to 83406063 437 - pseudogene predicted gene 5417
Tssr135665 15 83416916 to 83416918 2 - TSS region transcription start site region 135665
Tssr135666 15 83423742 to 83423751 9 - TSS region transcription start site region 135666
Tssr135667 15 83423759 to 83423770 11 - TSS region transcription start site region 135667
Tssr135668 15 83423780 to 83423793 13 - TSS region transcription start site region 135668
Tssr135669 15 83432794 to 83432813 19 - TSS region transcription start site region 135669
Tssr135670 15 83432819 to 83432859 40 - TSS region transcription start site region 135670
Tssr135671 15 83447860 to 83447876 16 - TSS region transcription start site region 135671
Tssr135672 15 83447916 to 83447942 26 - TSS region transcription start site region 135672
Tssr135673 15 83447983 to 83447992 9 - TSS region transcription start site region 135673