Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:82269023-84029056

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368 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi7417 15 82274346 to 82275867 1521 CpG island CpG island 7417
Sept3 15 82274893 to 82294574 19681 + protein coding gene septin 3
Tssr132371 15 82274979 to 82275034 55 + TSS region transcription start site region 132371
Tssr132372 15 82275050 to 82275069 19 + TSS region transcription start site region 132372
Tssr132373 15 82275197 to 82275281 84 + TSS region transcription start site region 132373
Tssr4667 15 82283139 to 82283150 11 + TSS region transcription start site region 4667
Tssr132374 15 82292673 to 82292676 3 + TSS region transcription start site region 132374
Tssr132375 15 82292786 to 82292812 26 + TSS region transcription start site region 132375
Tssr132376 15 82292814 to 82292829 15 + TSS region transcription start site region 132376
Tssr132377 15 82293936 to 82293975 39 + TSS region transcription start site region 132377
Tssr132378 15 82294090 to 82294107 17 + TSS region transcription start site region 132378
Cpgi7418 15 82298866 to 82299359 493 CpG island CpG island 7418
Tssr4668 15 82298935 to 82298938 3 + TSS region transcription start site region 4668
Tssr132379 15 82298943 to 82298963 20 + TSS region transcription start site region 132379
Wbp2nl 15 82298954 to 82314623 15669 + protein coding gene WBP2 N-terminal like
Tssr132380 15 82298986 to 82298987 1 + TSS region transcription start site region 132380
Naga 15 82329532 to 82338852 9320 - protein coding gene N-acetyl galactosaminidase, alpha
Tssr135541 15 82332447 to 82332472 25 - TSS region transcription start site region 135541
Tssr135542 15 82337009 to 82337020 11 - TSS region transcription start site region 135542
Cpgi7419 15 82338651 to 82339331 680 CpG island CpG island 7419
Tssr135543 15 82338770 to 82338791 21 - TSS region transcription start site region 135543
Tssr135544 15 82338801 to 82338854 53 - TSS region transcription start site region 135544
Tssr135545 15 82338857 to 82338864 7 - TSS region transcription start site region 135545
Tssr4669 15 82338864 to 82338875 11 - TSS region transcription start site region 4669
Pheta2 15 82338947 to 82345710 6763 + protein coding gene PH domain containing endocytic trafficking adaptor 2
Cpgi7420 15 82340741 to 82341502 761 CpG island CpG island 7420
Tssr132381 15 82341199 to 82341213 14 + TSS region transcription start site region 132381
n-R5s41 15 82342653 to 82342771 118 + rRNA gene nuclear encoded rRNA 5S 41
Tssr132382 15 82343103 to 82343106 3 + TSS region transcription start site region 132382
Cpgi7421 15 82345784 to 82346543 759 CpG island CpG island 7421
Tssr132383 15 82346008 to 82346035 27 + TSS region transcription start site region 132383
Tssr132384 15 82346042 to 82346088 46 + TSS region transcription start site region 132384
Smdt1 15 82346046 to 82349062 3016 + protein coding gene single-pass membrane protein with aspartate rich tail 1
Tssr132385 15 82346117 to 82346122 5 + TSS region transcription start site region 132385
Ndufa6 15 82350139 to 82354291 4152 - protein coding gene NADH:ubiquinone oxidoreductase subunit A6
Tssr132386 15 82351770 to 82351774 4 + TSS region transcription start site region 132386
Cpgi7422 15 82353881 to 82354843 962 CpG island CpG island 7422
Tssr135546 15 82354194 to 82354208 14 - TSS region transcription start site region 135546
Tssr135547 15 82354225 to 82354261 36 - TSS region transcription start site region 135547
Tssr135548 15 82354280 to 82354291 11 - TSS region transcription start site region 135548
Tssr135549 15 82354312 to 82354323 11 - TSS region transcription start site region 135549
Tssr132387 15 82354394 to 82354445 51 + TSS region transcription start site region 132387
Tssr132388 15 82354477 to 82354508 31 + TSS region transcription start site region 132388
Tssr132389 15 82358290 to 82358294 4 + TSS region transcription start site region 132389
Tssr132390 15 82358544 to 82358584 40 + TSS region transcription start site region 132390
Tssr132391 15 82358585 to 82358597 12 + TSS region transcription start site region 132391
Tssr132392 15 82362910 to 82362913 3 + TSS region transcription start site region 132392
Cyp2d22 15 82370527 to 82380260 9733 - protein coding gene cytochrome P450, family 2, subfamily d, polypeptide 22
Tssr135550 15 82371936 to 82371961 25 - TSS region transcription start site region 135550
Tssr132393 15 82377187 to 82377191 4 + TSS region transcription start site region 132393
Tssr132394 15 82379375 to 82379421 46 + TSS region transcription start site region 132394
Tssr135551 15 82380140 to 82380150 10 - TSS region transcription start site region 135551
Tssr135552 15 82380179 to 82380263 84 - TSS region transcription start site region 135552
Tssr135553 15 82380272 to 82380281 9 - TSS region transcription start site region 135553
Cyp2d11 15 82389154 to 82394022 4868 - protein coding gene cytochrome P450, family 2, subfamily d, polypeptide 11
Mir7684 15 82393919 to 82393978 59 - miRNA gene microRNA 7684
Cyp2d10 15 82402846 to 82407195 4349 - protein coding gene cytochrome P450, family 2, subfamily d, polypeptide 10
Tssr135554 15 82403331 to 82403337 6 - TSS region transcription start site region 135554
Tssr135555 15 82404535 to 82404545 10 - TSS region transcription start site region 135555
Gm27331 15 82407094 to 82407153 59 - miRNA gene predicted gene, 27331
Tssr135556 15 82407187 to 82407203 16 - TSS region transcription start site region 135556
Gm25990 15 82408458 to 82408543 85 + miRNA gene predicted gene, 25990
Gm19267 15 82421451 to 82423447 1996 - pseudogene predicted gene, 19267
Gm46501 15 82433527 to 82436575 3048 + pseudogene predicted gene, 46501
Gm49421 15 82443480 to 82444651 1171 + pseudogene predicted gene, 49421
Gm49419 15 82449484 to 82449736 252 - pseudogene predicted gene, 49419
Tssr132395 15 82452372 to 82452385 13 + TSS region transcription start site region 132395
Cyp2d9 15 82452377 to 82456827 4450 + protein coding gene cytochrome P450, family 2, subfamily d, polypeptide 9
Drb7 15 82452377 to 82456827 4450 QTL dopamine receptor binding 7
Gm27622 15 82452421 to 82452480 59 + miRNA gene predicted gene, 27622
Tssr132396 15 82452544 to 82452558 14 + TSS region transcription start site region 132396
Tssr132397 15 82454118 to 82454157 39 + TSS region transcription start site region 132397
Tssr132398 15 82456336 to 82456348 12 + TSS region transcription start site region 132398
Tssr135557 15 82456383 to 82456400 17 - TSS region transcription start site region 135557
Cyp2d32-ps 15 82462621 to 82465111 2490 + pseudogene cytochrome P450, family 2, subfamily d, polypeptide 32, pseudogene
Gm27825 15 82504627 to 82511372 6745 + pseudogene predicted gene, 27825
Tssr4670 15 82508562 to 82508570 8 + TSS region transcription start site region 4670
Tdg-ps 15 82516295 to 82519242 2947 + pseudogene thymine DNA glycosylase, pseudogene
Gm46525 15 82519913 to 82520227 314 - pseudogene predicted gene, 46525
Gm46524 15 82538289 to 82538602 313 + pseudogene predicted gene, 46524
Gm28023 15 82544020 to 82548652 4632 - pseudogene predicted gene, 28023
Cyp2d12 15 82555044 to 82559413 4369 + protein coding gene cytochrome P450, family 2, subfamily d, polypeptide 12
Tssr132399 15 82555087 to 82555091 4 + TSS region transcription start site region 132399
Gm27924 15 82555116 to 82555175 59 + miRNA gene predicted gene, 27924
Cyp2d33-ps 15 82562197 to 82565518 3321 + pseudogene cytochrome P450, family 2, subfamily d, polypeptide 33, pseudogene
Gm49429 15 82563436 to 82565311 1875 - unclassified gene predicted gene, 49429
Cyp2d34-ps 15 82608921 to 82612895 3974 - pseudogene cytochrome P450, family 2, subfamily d, polypeptide 34, pseudogene
Gm27742 15 82612887 to 82612946 59 - miRNA gene predicted gene, 27742
Cyp2d34 15 82615965 to 82620946 4981 - protein coding gene cytochrome P450, family 2, subfamily d, polypeptide 34
Tssr135558 15 82620931 to 82620947 16 - TSS region transcription start site region 135558
Gm49431 15 82621092 to 82660905 39813 + antisense lncRNA gene predicted gene, 49431
Cyp2d13 15 82636750 to 82642045 5295 - pseudogene cytochrome P450, family 2, subfamily d, polypeptide 13
D15Mit189 15 82641175 to 82641298 123 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 189
Brm2 15 82641175 to 82641298 123 QTL brachyury modifier 2
Gm27463 15 82641945 to 82642001 56 - miRNA gene predicted gene, 27463
Tssr135559 15 82642035 to 82642052 17 - TSS region transcription start site region 135559
Tssr132400 15 82642151 to 82642168 17 + TSS region transcription start site region 132400
Tssr132401 15 82642181 to 82642194 13 + TSS region transcription start site region 132401
Cyp2d35-ps 15 82649917 to 82654711 4794 - pseudogene cytochrome P450, family 2, subfamily d, member 35, pseudogene
Tssr4671 15 82662298 to 82662302 4 - TSS region transcription start site region 4671
Cyp2d36-ps 15 82671288 to 82683257 11969 - pseudogene cytochrome P450, family 2, subfamily d, polypeptide 36, pseudogene
Tssr135560 15 82687694 to 82687699 5 - TSS region transcription start site region 135560
Cyp2d37-ps 15 82688750 to 82690058 1308 - pseudogene cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene
Tssr135561 15 82693062 to 82693082 20 - TSS region transcription start site region 135561
Tssr135562 15 82693091 to 82693114 23 - TSS region transcription start site region 135562
Cyp2d38-ps 15 82705575 to 82707270 1695 - pseudogene cytochrome P450, family 2, subfamily d, member 38, pseudogene
Tssr135563 15 82707356 to 82707375 19 - TSS region transcription start site region 135563
Cyp2d39-ps 15 82716007 to 82719416 3409 - pseudogene cytochrome P450, family 2, subfamily d, polypeptide 39, pseudogene
Gm49433 15 82741807 to 82742116 309 - pseudogene predicted gene, 49433
Cyp2d40 15 82759833 to 82764122 4289 - protein coding gene cytochrome P450, family 2, subfamily d, polypeptide 40
Tssr135564 15 82764176 to 82764192 16 - TSS region transcription start site region 135564
Cyp2d41-ps 15 82777931 to 82782110 4179 - pseudogene cytochrome P450, family 2, subfamily d, member 41, pseudogene
Gm27618 15 82782082 to 82782141 59 - miRNA gene predicted gene, 27618
Tssr135565 15 82782179 to 82782184 5 - TSS region transcription start site region 135565
Cyp2d26 15 82790101 to 82794294 4193 - protein coding gene cytochrome P450, family 2, subfamily d, polypeptide 26
Tssr135566 15 82791045 to 82791058 13 - TSS region transcription start site region 135566
Tssr135567 15 82791083 to 82791093 10 - TSS region transcription start site region 135567
Tssr135568 15 82791116 to 82791133 17 - TSS region transcription start site region 135568
Tssr135569 15 82792570 to 82792580 10 - TSS region transcription start site region 135569
Tssr135570 15 82792614 to 82792622 8 - TSS region transcription start site region 135570
Tssr135571 15 82792624 to 82792636 12 - TSS region transcription start site region 135571
Tssr135572 15 82792925 to 82792940 15 - TSS region transcription start site region 135572
Tssr135573 15 82793166 to 82793195 29 - TSS region transcription start site region 135573
Tssr135574 15 82794201 to 82794223 22 - TSS region transcription start site region 135574
Tssr135575 15 82794236 to 82794260 24 - TSS region transcription start site region 135575
Tssr135576 15 82794267 to 82794284 17 - TSS region transcription start site region 135576
Tssr135577 15 82794289 to 82794300 11 - TSS region transcription start site region 135577
Tssr135578 15 82794446 to 82794462 16 - TSS region transcription start site region 135578
Tssr135579 15 82794474 to 82794484 10 - TSS region transcription start site region 135579
Tssr135580 15 82794872 to 82794906 34 - TSS region transcription start site region 135580
Gm49435 15 82800973 to 82803964 2991 - pseudogene predicted gene, 49435
Tssr135581 15 82806813 to 82806815 2 - TSS region transcription start site region 135581
Tcf20 15 82808436 to 82987872 179436 - protein coding gene transcription factor 20
Tssr135582 15 82813923 to 82813927 4 - TSS region transcription start site region 135582
Tssr135583 15 82832516 to 82832519 3 - TSS region transcription start site region 135583
Tssr135584 15 82836578 to 82836582 4 - TSS region transcription start site region 135584
Tssr135585 15 82847865 to 82847868 3 - TSS region transcription start site region 135585
Tssr135586 15 82852656 to 82852672 16 - TSS region transcription start site region 135586
Tssr135587 15 82852684 to 82852719 35 - TSS region transcription start site region 135587
Tssr135588 15 82852724 to 82852737 13 - TSS region transcription start site region 135588
Tssr135589 15 82870836 to 82870842 6 - TSS region transcription start site region 135589
Tssr135590 15 82884385 to 82884388 3 - TSS region transcription start site region 135590
Tssr135591 15 82886703 to 82886707 4 - TSS region transcription start site region 135591
Tssr135592 15 82889201 to 82889203 2 - TSS region transcription start site region 135592
Tbrg3 15 82890483 to 82898461 7978 - lncRNA gene transforming growth factor beta regulated gene 3
Cpgi7423 15 82898707 to 82900485 1778 CpG island CpG island 7423
Tssr132402 15 82899018 to 82899035 17 + TSS region transcription start site region 132402
Tssr132403 15 82899039 to 82899058 19 + TSS region transcription start site region 132403
Tssr132404 15 82899060 to 82899082 22 + TSS region transcription start site region 132404
Gm20324 15 82899080 to 82905816 6736 + antisense lncRNA gene predicted gene, 20324
Tssr135593 15 82899741 to 82899776 35 - TSS region transcription start site region 135593
Tssr135594 15 82899779 to 82899823 44 - TSS region transcription start site region 135594
Tssr135595 15 82899834 to 82899845 11 - TSS region transcription start site region 135595
Cpgi7424 15 82911485 to 82912287 802 CpG island CpG island 7424
Tssr135596 15 82912143 to 82912190 47 - TSS region transcription start site region 135596
Cpgi7425 15 82917450 to 82917693 243 CpG island CpG island 7425
Cpgi7426 15 82938219 to 82938418 199 CpG island CpG island 7426
Cpgi7427 15 82952350 to 82952631 281 CpG island CpG island 7427
Mir3080 15 82959218 to 82959296 78 - miRNA gene microRNA 3080
Cpgi7428 15 82961057 to 82961413 356 CpG island CpG island 7428
Cpgi7430 15 82962825 to 82964623 1798 CpG island CpG island 7430
Tssr135597 15 82963748 to 82963765 17 - TSS region transcription start site region 135597
Tssr135598 15 82963780 to 82963865 85 - TSS region transcription start site region 135598
Cpgi7431 15 82968393 to 82968754 361 CpG island CpG island 7431
Gm29019 15 82982725 to 82987830 5105 - lincRNA gene predicted gene 29019
AW121686 15 82982870 to 82989134 6264 + lincRNA gene expressed sequence AW121686
Cpgi7432 15 82987108 to 82988010 902 CpG island CpG island 7432
Tssr135599 15 82987678 to 82987690 12 - TSS region transcription start site region 135599
Tssr135600 15 82987693 to 82987705 12 - TSS region transcription start site region 135600
Tssr135601 15 82987833 to 82987866 33 - TSS region transcription start site region 135601
Tssr135602 15 82987876 to 82987890 14 - TSS region transcription start site region 135602
Tssr135603 15 82993962 to 82993965 3 - TSS region transcription start site region 135603
Tssr135604 15 82995051 to 82995053 2 - TSS region transcription start site region 135604
Nfam1 15 82996736 to 83033397 36661 - protein coding gene Nfat activating molecule with ITAM motif 1
Tssr135605 15 82998574 to 82998610 36 - TSS region transcription start site region 135605
Tssr135606 15 82998916 to 82998930 14 - TSS region transcription start site region 135606
Tssr135607 15 82998931 to 82998953 22 - TSS region transcription start site region 135607
Tssr135608 15 82998988 to 82999023 35 - TSS region transcription start site region 135608
Tssr135609 15 82999054 to 82999088 34 - TSS region transcription start site region 135609
Tssr135610 15 83004964 to 83004992 28 - TSS region transcription start site region 135610
Tssr135611 15 83030946 to 83030958 12 - TSS region transcription start site region 135611
Tssr135612 15 83031107 to 83031111 4 - TSS region transcription start site region 135612
Tssr135613 15 83033229 to 83033240 11 - TSS region transcription start site region 135613
Tssr135614 15 83033252 to 83033274 22 - TSS region transcription start site region 135614
Tssr135615 15 83033294 to 83033312 18 - TSS region transcription start site region 135615
Tssr132405 15 83033386 to 83033397 11 + TSS region transcription start site region 132405
Tssr132406 15 83033406 to 83033480 74 + TSS region transcription start site region 132406
Gm32620 15 83033437 to 83038590 5153 + lncRNA gene predicted gene, 32620
Cpgi7433 15 83034652 to 83035007 355 CpG island CpG island 7433
Tssr132407 15 83035491 to 83035496 5 + TSS region transcription start site region 132407
Tssr135616 15 83052874 to 83052888 14 - TSS region transcription start site region 135616
Cpgi7434 15 83056601 to 83056818 217 CpG island CpG island 7434
Gm41366 15 83075676 to 83082188 6512 - lncRNA gene predicted gene, 41366
Cpgi7435 15 83075939 to 83076248 309 CpG island CpG island 7435
Pitm5 15 83079860 to 87170187 4090327 QTL prion incubation time 5
D15Mit134 15 83079860 to 83080005 145 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 134
Cpgi7436 15 83089155 to 83089568 413 CpG island CpG island 7436
Cpgi7437 15 83099851 to 83100491 640 CpG island CpG island 7437
Serhl 15 83100192 to 83116675 16483 + protein coding gene serine hydrolase-like
Tssr132408 15 83100201 to 83100210 9 + TSS region transcription start site region 132408