Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:82046936-82696961

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178 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Snu13 15 82041345 to 82047598 6253 - protein coding gene SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)
Cpgi7406 15 82046573 to 82047795 1222 CpG island CpG island 7406
Tssr135525 15 82047545 to 82047563 18 - TSS region transcription start site region 135525
Tssr135526 15 82047582 to 82047610 28 - TSS region transcription start site region 135526
Gm49487 15 82053652 to 82054012 360 - pseudogene predicted gene, 49487
Gm49488 15 82055635 to 82055830 195 - pseudogene predicted gene, 49488
Gm49489 15 82056638 to 82056989 351 - pseudogene predicted gene, 49489
Tssr132343 15 82059137 to 82059140 3 + TSS region transcription start site region 132343
Tssr132344 15 82059144 to 82059158 14 + TSS region transcription start site region 132344
4930407I10Rik 15 82059151 to 82066538 7387 + protein coding gene RIKEN cDNA 4930407I10 gene
Tssr132345 15 82063903 to 82063908 5 + TSS region transcription start site region 132345
Cpgi7407 15 82069894 to 82070705 811 CpG island CpG island 7407
Mei1 15 82070057 to 82126817 56760 + protein coding gene meiotic double-stranded break formation protein 1
Cpgi7408 15 82127390 to 82128467 1077 CpG island CpG island 7408
Tssr132346 15 82127916 to 82128001 85 + TSS region transcription start site region 132346
Ccdc134 15 82127922 to 82142203 14281 + protein coding gene coiled-coil domain containing 134
Tssr132347 15 82146276 to 82146282 6 + TSS region transcription start site region 132347
Cpgi7409 15 82146585 to 82148248 1663 CpG island CpG island 7409
Tssr135527 15 82146789 to 82146819 30 - TSS region transcription start site region 135527
Tssr135528 15 82147042 to 82147059 17 - TSS region transcription start site region 135528
Tssr132348 15 82147238 to 82147275 37 + TSS region transcription start site region 132348
Srebf2 15 82147269 to 82205379 58110 + protein coding gene sterol regulatory element binding factor 2
Tssr132349 15 82147336 to 82147359 23 + TSS region transcription start site region 132349
Tssr132350 15 82147372 to 82147398 26 + TSS region transcription start site region 132350
Tssr135529 15 82147491 to 82147500 9 - TSS region transcription start site region 135529
Tssr135530 15 82147511 to 82147523 12 - TSS region transcription start site region 135530
Tssr132351 15 82147565 to 82147615 50 + TSS region transcription start site region 132351
Tssr132352 15 82147628 to 82147660 32 + TSS region transcription start site region 132352
Tssr132353 15 82149124 to 82149129 5 + TSS region transcription start site region 132353
Tssr135531 15 82166924 to 82166933 9 - TSS region transcription start site region 135531
Tssr132354 15 82167019 to 82167054 35 + TSS region transcription start site region 132354
Tssr132355 15 82169904 to 82169935 31 + TSS region transcription start site region 132355
Tssr132356 15 82169963 to 82169976 13 + TSS region transcription start site region 132356
Tssr132357 15 82169990 to 82170001 11 + TSS region transcription start site region 132357
Tssr132358 15 82170009 to 82170035 26 + TSS region transcription start site region 132358
Cpgi7410 15 82171097 to 82171344 247 CpG island CpG island 7410
Tssr132359 15 82171188 to 82171204 16 + TSS region transcription start site region 132359
Tssr132360 15 82171206 to 82171245 39 + TSS region transcription start site region 132360
Tssr4664 15 82181153 to 82181156 3 + TSS region transcription start site region 4664
Gm49502 15 82185516 to 82187625 2109 + unclassified gene predicted gene, 49502
Tssr4665 15 82197414 to 82197417 3 + TSS region transcription start site region 4665
Tssr132361 15 82197519 to 82197530 11 + TSS region transcription start site region 132361
Tssr4666 15 82197600 to 82197611 11 + TSS region transcription start site region 4666
Mir33 15 82198122 to 82198190 68 + miRNA gene microRNA 33
Shisa8 15 82206952 to 82212815 5863 - protein coding gene shisa family member 8
Cpgi7411 15 82207022 to 82208000 978 CpG island CpG island 7411
Cpgi7412 15 82211415 to 82213450 2035 CpG island CpG island 7412
Tssr135532 15 82212693 to 82212706 13 - TSS region transcription start site region 135532
Tssr135533 15 82212796 to 82212812 16 - TSS region transcription start site region 135533
Tssr135534 15 82212828 to 82212848 20 - TSS region transcription start site region 135534
Cpgi7413 15 82218774 to 82218955 181 CpG island CpG island 7413
Tnfrsf13c 15 82221743 to 82224369 2626 - protein coding gene tumor necrosis factor receptor superfamily, member 13c
Tssr135535 15 82222988 to 82222992 4 - TSS region transcription start site region 135535
Cpgi7414 15 82223737 to 82224529 792 CpG island CpG island 7414
Tssr135536 15 82224330 to 82224361 31 - TSS region transcription start site region 135536
Tssr135537 15 82224364 to 82224379 15 - TSS region transcription start site region 135537
Gm49503 15 82229333 to 82233531 4198 - lincRNA gene predicted gene, 49503
Cenpm 15 82233779 to 82244748 10969 - protein coding gene centromere protein M
Cpgi7415 15 82243929 to 82244905 976 CpG island CpG island 7415
Tssr135538 15 82244374 to 82244426 52 - TSS region transcription start site region 135538
Tssr135539 15 82244688 to 82244715 27 - TSS region transcription start site region 135539
Tssr135540 15 82244716 to 82244755 39 - TSS region transcription start site region 135540
Tssr132362 15 82244776 to 82244791 15 + TSS region transcription start site region 132362
Tssr132363 15 82244822 to 82244843 21 + TSS region transcription start site region 132363
1500009C09Rik 15 82252397 to 82260753 8356 + protein coding gene RIKEN cDNA 1500009C09 gene
Tssr132364 15 82252469 to 82252475 6 + TSS region transcription start site region 132364
Tssr132365 15 82256098 to 82256130 32 + TSS region transcription start site region 132365
Tssr132366 15 82256152 to 82256155 3 + TSS region transcription start site region 132366
Tssr132367 15 82256191 to 82256204 13 + TSS region transcription start site region 132367
Tssr132368 15 82256296 to 82256313 17 + TSS region transcription start site region 132368
Tssr132369 15 82256326 to 82256333 7 + TSS region transcription start site region 132369
Cpgi7416 15 82259488 to 82259869 381 CpG island CpG island 7416
Tssr132370 15 82268793 to 82268820 27 + TSS region transcription start site region 132370
Cpgi7417 15 82274346 to 82275867 1521 CpG island CpG island 7417
Sept3 15 82274893 to 82294574 19681 + protein coding gene septin 3
Tssr132371 15 82274979 to 82275034 55 + TSS region transcription start site region 132371
Tssr132372 15 82275050 to 82275069 19 + TSS region transcription start site region 132372
Tssr132373 15 82275197 to 82275281 84 + TSS region transcription start site region 132373
Tssr4667 15 82283139 to 82283150 11 + TSS region transcription start site region 4667
Tssr132374 15 82292673 to 82292676 3 + TSS region transcription start site region 132374
Tssr132375 15 82292786 to 82292812 26 + TSS region transcription start site region 132375
Tssr132376 15 82292814 to 82292829 15 + TSS region transcription start site region 132376
Tssr132377 15 82293936 to 82293975 39 + TSS region transcription start site region 132377
Tssr132378 15 82294090 to 82294107 17 + TSS region transcription start site region 132378
Cpgi7418 15 82298866 to 82299359 493 CpG island CpG island 7418
Tssr4668 15 82298935 to 82298938 3 + TSS region transcription start site region 4668
Tssr132379 15 82298943 to 82298963 20 + TSS region transcription start site region 132379
Wbp2nl 15 82298954 to 82314623 15669 + protein coding gene WBP2 N-terminal like
Tssr132380 15 82298986 to 82298987 1 + TSS region transcription start site region 132380
Naga 15 82329532 to 82338852 9320 - protein coding gene N-acetyl galactosaminidase, alpha
Tssr135541 15 82332447 to 82332472 25 - TSS region transcription start site region 135541
Tssr135542 15 82337009 to 82337020 11 - TSS region transcription start site region 135542
Cpgi7419 15 82338651 to 82339331 680 CpG island CpG island 7419
Tssr135543 15 82338770 to 82338791 21 - TSS region transcription start site region 135543
Tssr135544 15 82338801 to 82338854 53 - TSS region transcription start site region 135544
Tssr135545 15 82338857 to 82338864 7 - TSS region transcription start site region 135545
Tssr4669 15 82338864 to 82338875 11 - TSS region transcription start site region 4669
Pheta2 15 82338947 to 82345710 6763 + protein coding gene PH domain containing endocytic trafficking adaptor 2
Cpgi7420 15 82340741 to 82341502 761 CpG island CpG island 7420
Tssr132381 15 82341199 to 82341213 14 + TSS region transcription start site region 132381
n-R5s41 15 82342653 to 82342771 118 + rRNA gene nuclear encoded rRNA 5S 41
Tssr132382 15 82343103 to 82343106 3 + TSS region transcription start site region 132382
Cpgi7421 15 82345784 to 82346543 759 CpG island CpG island 7421
Tssr132383 15 82346008 to 82346035 27 + TSS region transcription start site region 132383
Tssr132384 15 82346042 to 82346088 46 + TSS region transcription start site region 132384
Smdt1 15 82346046 to 82349062 3016 + protein coding gene single-pass membrane protein with aspartate rich tail 1
Tssr132385 15 82346117 to 82346122 5 + TSS region transcription start site region 132385
Ndufa6 15 82350139 to 82354291 4152 - protein coding gene NADH:ubiquinone oxidoreductase subunit A6
Tssr132386 15 82351770 to 82351774 4 + TSS region transcription start site region 132386
Cpgi7422 15 82353881 to 82354843 962 CpG island CpG island 7422
Tssr135546 15 82354194 to 82354208 14 - TSS region transcription start site region 135546
Tssr135547 15 82354225 to 82354261 36 - TSS region transcription start site region 135547
Tssr135548 15 82354280 to 82354291 11 - TSS region transcription start site region 135548
Tssr135549 15 82354312 to 82354323 11 - TSS region transcription start site region 135549
Tssr132387 15 82354394 to 82354445 51 + TSS region transcription start site region 132387
Tssr132388 15 82354477 to 82354508 31 + TSS region transcription start site region 132388
Tssr132389 15 82358290 to 82358294 4 + TSS region transcription start site region 132389
Tssr132390 15 82358544 to 82358584 40 + TSS region transcription start site region 132390
Tssr132391 15 82358585 to 82358597 12 + TSS region transcription start site region 132391
Tssr132392 15 82362910 to 82362913 3 + TSS region transcription start site region 132392
Cyp2d22 15 82370527 to 82380260 9733 - protein coding gene cytochrome P450, family 2, subfamily d, polypeptide 22
Tssr135550 15 82371936 to 82371961 25 - TSS region transcription start site region 135550
Tssr132393 15 82377187 to 82377191 4 + TSS region transcription start site region 132393
Tssr132394 15 82379375 to 82379421 46 + TSS region transcription start site region 132394
Tssr135551 15 82380140 to 82380150 10 - TSS region transcription start site region 135551
Tssr135552 15 82380179 to 82380263 84 - TSS region transcription start site region 135552
Tssr135553 15 82380272 to 82380281 9 - TSS region transcription start site region 135553
Cyp2d11 15 82389154 to 82394022 4868 - protein coding gene cytochrome P450, family 2, subfamily d, polypeptide 11
Mir7684 15 82393919 to 82393978 59 - miRNA gene microRNA 7684
Cyp2d10 15 82402846 to 82407195 4349 - protein coding gene cytochrome P450, family 2, subfamily d, polypeptide 10
Tssr135554 15 82403331 to 82403337 6 - TSS region transcription start site region 135554
Tssr135555 15 82404535 to 82404545 10 - TSS region transcription start site region 135555
Gm27331 15 82407094 to 82407153 59 - miRNA gene predicted gene, 27331
Tssr135556 15 82407187 to 82407203 16 - TSS region transcription start site region 135556
Gm25990 15 82408458 to 82408543 85 + miRNA gene predicted gene, 25990
Gm19267 15 82421451 to 82423447 1996 - pseudogene predicted gene, 19267
Gm46501 15 82433527 to 82436575 3048 + pseudogene predicted gene, 46501
Gm49421 15 82443480 to 82444651 1171 + pseudogene predicted gene, 49421
Gm49419 15 82449484 to 82449736 252 - pseudogene predicted gene, 49419
Tssr132395 15 82452372 to 82452385 13 + TSS region transcription start site region 132395
Cyp2d9 15 82452377 to 82456827 4450 + protein coding gene cytochrome P450, family 2, subfamily d, polypeptide 9
Drb7 15 82452377 to 82456827 4450 QTL dopamine receptor binding 7
Gm27622 15 82452421 to 82452480 59 + miRNA gene predicted gene, 27622
Tssr132396 15 82452544 to 82452558 14 + TSS region transcription start site region 132396
Tssr132397 15 82454118 to 82454157 39 + TSS region transcription start site region 132397
Tssr132398 15 82456336 to 82456348 12 + TSS region transcription start site region 132398
Tssr135557 15 82456383 to 82456400 17 - TSS region transcription start site region 135557
Cyp2d32-ps 15 82462621 to 82465111 2490 + pseudogene cytochrome P450, family 2, subfamily d, polypeptide 32, pseudogene
Gm27825 15 82504627 to 82511372 6745 + pseudogene predicted gene, 27825
Tssr4670 15 82508562 to 82508570 8 + TSS region transcription start site region 4670
Tdg-ps 15 82516295 to 82519242 2947 + pseudogene thymine DNA glycosylase, pseudogene
Gm46525 15 82519913 to 82520227 314 - pseudogene predicted gene, 46525
Gm46524 15 82538289 to 82538602 313 + pseudogene predicted gene, 46524
Gm28023 15 82544020 to 82548652 4632 - pseudogene predicted gene, 28023
Cyp2d12 15 82555044 to 82559413 4369 + protein coding gene cytochrome P450, family 2, subfamily d, polypeptide 12
Tssr132399 15 82555087 to 82555091 4 + TSS region transcription start site region 132399
Gm27924 15 82555116 to 82555175 59 + miRNA gene predicted gene, 27924
Cyp2d33-ps 15 82562197 to 82565518 3321 + pseudogene cytochrome P450, family 2, subfamily d, polypeptide 33, pseudogene
Gm49429 15 82563436 to 82565311 1875 - unclassified gene predicted gene, 49429
Cyp2d34-ps 15 82608921 to 82612895 3974 - pseudogene cytochrome P450, family 2, subfamily d, polypeptide 34, pseudogene
Gm27742 15 82612887 to 82612946 59 - miRNA gene predicted gene, 27742
Cyp2d34 15 82615965 to 82620946 4981 - protein coding gene cytochrome P450, family 2, subfamily d, polypeptide 34
Tssr135558 15 82620931 to 82620947 16 - TSS region transcription start site region 135558
Gm49431 15 82621092 to 82660905 39813 + antisense lncRNA gene predicted gene, 49431
Cyp2d13 15 82636750 to 82642045 5295 - pseudogene cytochrome P450, family 2, subfamily d, polypeptide 13
Brm2 15 82641175 to 82641298 123 QTL brachyury modifier 2
D15Mit189 15 82641175 to 82641298 123 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 189
Gm27463 15 82641945 to 82642001 56 - miRNA gene predicted gene, 27463
Tssr135559 15 82642035 to 82642052 17 - TSS region transcription start site region 135559
Tssr132400 15 82642151 to 82642168 17 + TSS region transcription start site region 132400
Tssr132401 15 82642181 to 82642194 13 + TSS region transcription start site region 132401
Cyp2d35-ps 15 82649917 to 82654711 4794 - pseudogene cytochrome P450, family 2, subfamily d, member 35, pseudogene
Tssr4671 15 82662298 to 82662302 4 - TSS region transcription start site region 4671
Cyp2d36-ps 15 82671288 to 82683257 11969 - pseudogene cytochrome P450, family 2, subfamily d, polypeptide 36, pseudogene
Tssr135560 15 82687694 to 82687699 5 - TSS region transcription start site region 135560
Cyp2d37-ps 15 82688750 to 82690058 1308 - pseudogene cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene
Tssr135561 15 82693062 to 82693082 20 - TSS region transcription start site region 135561
Tssr135562 15 82693091 to 82693114 23 - TSS region transcription start site region 135562