Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:81896601-84216818

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544 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aco2 15 81872463 to 81915137 42674 + protein coding gene aconitase 2, mitochondrial
Tssr132313 15 81910430 to 81910435 5 + TSS region transcription start site region 132313
Tssr132314 15 81912259 to 81912280 21 + TSS region transcription start site region 132314
Polr3h 15 81915030 to 81926243 11213 - protein coding gene polymerase (RNA) III (DNA directed) polypeptide H
Tssr135511 15 81920001 to 81920006 5 - TSS region transcription start site region 135511
Cpgi7401 15 81925529 to 81926401 872 CpG island CpG island 7401
Tssr135512 15 81926148 to 81926223 75 - TSS region transcription start site region 135512
D15Mit118 15 81927625 to 81927745 120 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 118
Cia35 15 81927625 to 81927745 120 QTL collagen induced arthritis QTL 35
Gm32167 15 81932063 to 81936720 4657 - lncRNA gene predicted gene, 32167
Tssr135513 15 81936695 to 81936716 21 - TSS region transcription start site region 135513
Tssr132315 15 81936753 to 81936839 86 + TSS region transcription start site region 132315
Csdc2 15 81936759 to 81950941 14182 + protein coding gene cold shock domain containing C2, RNA binding
Tssr132316 15 81936846 to 81936874 28 + TSS region transcription start site region 132316
Cpgi7402 15 81936874 to 81937094 220 CpG island CpG island 7402
Tssr132317 15 81936880 to 81936900 20 + TSS region transcription start site region 132317
Tssr132318 15 81936911 to 81936934 23 + TSS region transcription start site region 132318
Tssr132319 15 81949213 to 81949221 8 + TSS region transcription start site region 132319
Pmm1 15 81951108 to 81960930 9822 - protein coding gene phosphomannomutase 1
Tssr135514 15 81955703 to 81955732 29 - TSS region transcription start site region 135514
Tssr135515 15 81956197 to 81956241 44 - TSS region transcription start site region 135515
Cpgi7403 15 81960150 to 81961313 1163 CpG island CpG island 7403
Tssr135516 15 81960801 to 81960812 11 - TSS region transcription start site region 135516
Tssr135517 15 81960818 to 81960846 28 - TSS region transcription start site region 135517
Tssr135518 15 81960851 to 81960872 21 - TSS region transcription start site region 135518
Cyp2d67-ps 15 81967701 to 81968549 848 + pseudogene cytochrome P450, family 2, subfamily d, polypeptide 67, pseudogene
Tssr4663 15 81969319 to 81969365 46 - TSS region transcription start site region 4663
Tssr132320 15 81972365 to 81972379 14 + TSS region transcription start site region 132320
Gm5805 15 81972390 to 81972845 455 + pseudogene predicted gene 5805
Cpgi7404 15 81980461 to 81980804 343 CpG island CpG island 7404
Tssr132321 15 81980509 to 81980546 37 + TSS region transcription start site region 132321
1700029P11Rik 15 81980540 to 81981563 1023 + protein coding gene RIKEN cDNA 1700029P11 gene
Xrcc6 15 81987835 to 82040085 52250 + protein coding gene X-ray repair complementing defective repair in Chinese hamster cells 6
Tssr132322 15 81987835 to 81987848 13 + TSS region transcription start site region 132322
Tssr132323 15 81988283 to 81988286 3 + TSS region transcription start site region 132323
Desi1 15 81992523 to 82016220 23697 - protein coding gene desumoylating isopeptidase 1
D15Jcs153 15 82013580 to 82013686 106 DNA segment DNA segment, Chr 15, John C. Schimenti 153
Cpgi7405 15 82015265 to 82016793 1528 CpG island CpG island 7405
Tssr135519 15 82016087 to 82016129 42 - TSS region transcription start site region 135519
Tssr135520 15 82016134 to 82016170 36 - TSS region transcription start site region 135520
Tssr135521 15 82016174 to 82016202 28 - TSS region transcription start site region 135521
Tssr135522 15 82016203 to 82016217 14 - TSS region transcription start site region 135522
Tssr132324 15 82016378 to 82016419 41 + TSS region transcription start site region 132324
Tssr132325 15 82016420 to 82016459 39 + TSS region transcription start site region 132325
Tssr132326 15 82017075 to 82017087 12 + TSS region transcription start site region 132326
Tssr132327 15 82017108 to 82017115 7 + TSS region transcription start site region 132327
Tssr132328 15 82017805 to 82017808 3 + TSS region transcription start site region 132328
Tssr132329 15 82022693 to 82022726 33 + TSS region transcription start site region 132329
Tssr132330 15 82022740 to 82022757 17 + TSS region transcription start site region 132330
Tssr132331 15 82022776 to 82022801 25 + TSS region transcription start site region 132331
Tssr132332 15 82022826 to 82022840 14 + TSS region transcription start site region 132332
Tssr132333 15 82022857 to 82022872 15 + TSS region transcription start site region 132333
Tssr132334 15 82022923 to 82022934 11 + TSS region transcription start site region 132334
Tssr132335 15 82022954 to 82022965 11 + TSS region transcription start site region 132335
Tssr135523 15 82027849 to 82027860 11 - TSS region transcription start site region 135523
Tssr132336 15 82028025 to 82028046 21 + TSS region transcription start site region 132336
Tssr132337 15 82028054 to 82028075 21 + TSS region transcription start site region 132337
Tssr132338 15 82028089 to 82028094 5 + TSS region transcription start site region 132338
Tssr132339 15 82028111 to 82028133 22 + TSS region transcription start site region 132339
Tssr132340 15 82028508 to 82028512 4 + TSS region transcription start site region 132340
Tssr132341 15 82029203 to 82029213 10 + TSS region transcription start site region 132341
Tssr135524 15 82029586 to 82029604 18 - TSS region transcription start site region 135524
Tssr132342 15 82036449 to 82036472 23 + TSS region transcription start site region 132342
Snu13 15 82041345 to 82047598 6253 - protein coding gene SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)
Cpgi7406 15 82046573 to 82047795 1222 CpG island CpG island 7406
Tssr135525 15 82047545 to 82047563 18 - TSS region transcription start site region 135525
Tssr135526 15 82047582 to 82047610 28 - TSS region transcription start site region 135526
Gm49487 15 82053652 to 82054012 360 - pseudogene predicted gene, 49487
Gm49488 15 82055635 to 82055830 195 - pseudogene predicted gene, 49488
Gm49489 15 82056638 to 82056989 351 - pseudogene predicted gene, 49489
Tssr132343 15 82059137 to 82059140 3 + TSS region transcription start site region 132343
Tssr132344 15 82059144 to 82059158 14 + TSS region transcription start site region 132344
4930407I10Rik 15 82059151 to 82066538 7387 + protein coding gene RIKEN cDNA 4930407I10 gene
Tssr132345 15 82063903 to 82063908 5 + TSS region transcription start site region 132345
Cpgi7407 15 82069894 to 82070705 811 CpG island CpG island 7407
Mei1 15 82070057 to 82126817 56760 + protein coding gene meiotic double-stranded break formation protein 1
Cpgi7408 15 82127390 to 82128467 1077 CpG island CpG island 7408
Tssr132346 15 82127916 to 82128001 85 + TSS region transcription start site region 132346
Ccdc134 15 82127922 to 82142203 14281 + protein coding gene coiled-coil domain containing 134
Tssr132347 15 82146276 to 82146282 6 + TSS region transcription start site region 132347
Cpgi7409 15 82146585 to 82148248 1663 CpG island CpG island 7409
Tssr135527 15 82146789 to 82146819 30 - TSS region transcription start site region 135527
Tssr135528 15 82147042 to 82147059 17 - TSS region transcription start site region 135528
Tssr132348 15 82147238 to 82147275 37 + TSS region transcription start site region 132348
Srebf2 15 82147269 to 82205379 58110 + protein coding gene sterol regulatory element binding factor 2
Tssr132349 15 82147336 to 82147359 23 + TSS region transcription start site region 132349
Tssr132350 15 82147372 to 82147398 26 + TSS region transcription start site region 132350
Tssr135529 15 82147491 to 82147500 9 - TSS region transcription start site region 135529
Tssr135530 15 82147511 to 82147523 12 - TSS region transcription start site region 135530
Tssr132351 15 82147565 to 82147615 50 + TSS region transcription start site region 132351
Tssr132352 15 82147628 to 82147660 32 + TSS region transcription start site region 132352
Tssr132353 15 82149124 to 82149129 5 + TSS region transcription start site region 132353
Tssr135531 15 82166924 to 82166933 9 - TSS region transcription start site region 135531
Tssr132354 15 82167019 to 82167054 35 + TSS region transcription start site region 132354
Tssr132355 15 82169904 to 82169935 31 + TSS region transcription start site region 132355
Tssr132356 15 82169963 to 82169976 13 + TSS region transcription start site region 132356
Tssr132357 15 82169990 to 82170001 11 + TSS region transcription start site region 132357
Tssr132358 15 82170009 to 82170035 26 + TSS region transcription start site region 132358
Cpgi7410 15 82171097 to 82171344 247 CpG island CpG island 7410
Tssr132359 15 82171188 to 82171204 16 + TSS region transcription start site region 132359
Tssr132360 15 82171206 to 82171245 39 + TSS region transcription start site region 132360
Tssr4664 15 82181153 to 82181156 3 + TSS region transcription start site region 4664
Gm49502 15 82185516 to 82187625 2109 + unclassified gene predicted gene, 49502
Tssr4665 15 82197414 to 82197417 3 + TSS region transcription start site region 4665
Tssr132361 15 82197519 to 82197530 11 + TSS region transcription start site region 132361
Tssr4666 15 82197600 to 82197611 11 + TSS region transcription start site region 4666
Mir33 15 82198122 to 82198190 68 + miRNA gene microRNA 33
Shisa8 15 82206952 to 82212815 5863 - protein coding gene shisa family member 8
Cpgi7411 15 82207022 to 82208000 978 CpG island CpG island 7411
Cpgi7412 15 82211415 to 82213450 2035 CpG island CpG island 7412
Tssr135532 15 82212693 to 82212706 13 - TSS region transcription start site region 135532
Tssr135533 15 82212796 to 82212812 16 - TSS region transcription start site region 135533
Tssr135534 15 82212828 to 82212848 20 - TSS region transcription start site region 135534
Cpgi7413 15 82218774 to 82218955 181 CpG island CpG island 7413
Tnfrsf13c 15 82221743 to 82224369 2626 - protein coding gene tumor necrosis factor receptor superfamily, member 13c
Tssr135535 15 82222988 to 82222992 4 - TSS region transcription start site region 135535
Cpgi7414 15 82223737 to 82224529 792 CpG island CpG island 7414
Tssr135536 15 82224330 to 82224361 31 - TSS region transcription start site region 135536
Tssr135537 15 82224364 to 82224379 15 - TSS region transcription start site region 135537
Gm49503 15 82229333 to 82233531 4198 - lincRNA gene predicted gene, 49503
Cenpm 15 82233779 to 82244748 10969 - protein coding gene centromere protein M
Cpgi7415 15 82243929 to 82244905 976 CpG island CpG island 7415
Tssr135538 15 82244374 to 82244426 52 - TSS region transcription start site region 135538
Tssr135539 15 82244688 to 82244715 27 - TSS region transcription start site region 135539
Tssr135540 15 82244716 to 82244755 39 - TSS region transcription start site region 135540
Tssr132362 15 82244776 to 82244791 15 + TSS region transcription start site region 132362
Tssr132363 15 82244822 to 82244843 21 + TSS region transcription start site region 132363
1500009C09Rik 15 82252397 to 82260753 8356 + protein coding gene RIKEN cDNA 1500009C09 gene
Tssr132364 15 82252469 to 82252475 6 + TSS region transcription start site region 132364
Tssr132365 15 82256098 to 82256130 32 + TSS region transcription start site region 132365
Tssr132366 15 82256152 to 82256155 3 + TSS region transcription start site region 132366
Tssr132367 15 82256191 to 82256204 13 + TSS region transcription start site region 132367
Tssr132368 15 82256296 to 82256313 17 + TSS region transcription start site region 132368
Tssr132369 15 82256326 to 82256333 7 + TSS region transcription start site region 132369
Cpgi7416 15 82259488 to 82259869 381 CpG island CpG island 7416
Tssr132370 15 82268793 to 82268820 27 + TSS region transcription start site region 132370
Cpgi7417 15 82274346 to 82275867 1521 CpG island CpG island 7417
Sept3 15 82274893 to 82294574 19681 + protein coding gene septin 3
Tssr132371 15 82274979 to 82275034 55 + TSS region transcription start site region 132371
Tssr132372 15 82275050 to 82275069 19 + TSS region transcription start site region 132372
Tssr132373 15 82275197 to 82275281 84 + TSS region transcription start site region 132373
Tssr4667 15 82283139 to 82283150 11 + TSS region transcription start site region 4667
Tssr132374 15 82292673 to 82292676 3 + TSS region transcription start site region 132374
Tssr132375 15 82292786 to 82292812 26 + TSS region transcription start site region 132375
Tssr132376 15 82292814 to 82292829 15 + TSS region transcription start site region 132376
Tssr132377 15 82293936 to 82293975 39 + TSS region transcription start site region 132377
Tssr132378 15 82294090 to 82294107 17 + TSS region transcription start site region 132378
Cpgi7418 15 82298866 to 82299359 493 CpG island CpG island 7418
Tssr4668 15 82298935 to 82298938 3 + TSS region transcription start site region 4668
Tssr132379 15 82298943 to 82298963 20 + TSS region transcription start site region 132379
Wbp2nl 15 82298954 to 82314623 15669 + protein coding gene WBP2 N-terminal like
Tssr132380 15 82298986 to 82298987 1 + TSS region transcription start site region 132380
Naga 15 82329532 to 82338852 9320 - protein coding gene N-acetyl galactosaminidase, alpha
Tssr135541 15 82332447 to 82332472 25 - TSS region transcription start site region 135541
Tssr135542 15 82337009 to 82337020 11 - TSS region transcription start site region 135542
Cpgi7419 15 82338651 to 82339331 680 CpG island CpG island 7419
Tssr135543 15 82338770 to 82338791 21 - TSS region transcription start site region 135543
Tssr135544 15 82338801 to 82338854 53 - TSS region transcription start site region 135544
Tssr135545 15 82338857 to 82338864 7 - TSS region transcription start site region 135545
Tssr4669 15 82338864 to 82338875 11 - TSS region transcription start site region 4669
Pheta2 15 82338947 to 82345710 6763 + protein coding gene PH domain containing endocytic trafficking adaptor 2
Cpgi7420 15 82340741 to 82341502 761 CpG island CpG island 7420
Tssr132381 15 82341199 to 82341213 14 + TSS region transcription start site region 132381
n-R5s41 15 82342653 to 82342771 118 + rRNA gene nuclear encoded rRNA 5S 41
Tssr132382 15 82343103 to 82343106 3 + TSS region transcription start site region 132382
Cpgi7421 15 82345784 to 82346543 759 CpG island CpG island 7421
Tssr132383 15 82346008 to 82346035 27 + TSS region transcription start site region 132383
Tssr132384 15 82346042 to 82346088 46 + TSS region transcription start site region 132384
Smdt1 15 82346046 to 82349062 3016 + protein coding gene single-pass membrane protein with aspartate rich tail 1
Tssr132385 15 82346117 to 82346122 5 + TSS region transcription start site region 132385
Ndufa6 15 82350139 to 82354291 4152 - protein coding gene NADH:ubiquinone oxidoreductase subunit A6
Tssr132386 15 82351770 to 82351774 4 + TSS region transcription start site region 132386
Cpgi7422 15 82353881 to 82354843 962 CpG island CpG island 7422
Tssr135546 15 82354194 to 82354208 14 - TSS region transcription start site region 135546
Tssr135547 15 82354225 to 82354261 36 - TSS region transcription start site region 135547
Tssr135548 15 82354280 to 82354291 11 - TSS region transcription start site region 135548
Tssr135549 15 82354312 to 82354323 11 - TSS region transcription start site region 135549
Tssr132387 15 82354394 to 82354445 51 + TSS region transcription start site region 132387
Tssr132388 15 82354477 to 82354508 31 + TSS region transcription start site region 132388
Tssr132389 15 82358290 to 82358294 4 + TSS region transcription start site region 132389
Tssr132390 15 82358544 to 82358584 40 + TSS region transcription start site region 132390
Tssr132391 15 82358585 to 82358597 12 + TSS region transcription start site region 132391
Tssr132392 15 82362910 to 82362913 3 + TSS region transcription start site region 132392
Cyp2d22 15 82370527 to 82380260 9733 - protein coding gene cytochrome P450, family 2, subfamily d, polypeptide 22
Tssr135550 15 82371936 to 82371961 25 - TSS region transcription start site region 135550
Tssr132393 15 82377187 to 82377191 4 + TSS region transcription start site region 132393
Tssr132394 15 82379375 to 82379421 46 + TSS region transcription start site region 132394
Tssr135551 15 82380140 to 82380150 10 - TSS region transcription start site region 135551
Tssr135552 15 82380179 to 82380263 84 - TSS region transcription start site region 135552
Tssr135553 15 82380272 to 82380281 9 - TSS region transcription start site region 135553
Cyp2d11 15 82389154 to 82394022 4868 - protein coding gene cytochrome P450, family 2, subfamily d, polypeptide 11
Mir7684 15 82393919 to 82393978 59 - miRNA gene microRNA 7684
Cyp2d10 15 82402846 to 82407195 4349 - protein coding gene cytochrome P450, family 2, subfamily d, polypeptide 10
Tssr135554 15 82403331 to 82403337 6 - TSS region transcription start site region 135554
Tssr135555 15 82404535 to 82404545 10 - TSS region transcription start site region 135555
Gm27331 15 82407094 to 82407153 59 - miRNA gene predicted gene, 27331
Tssr135556 15 82407187 to 82407203 16 - TSS region transcription start site region 135556
Gm25990 15 82408458 to 82408543 85 + miRNA gene predicted gene, 25990
Gm19267 15 82421451 to 82423447 1996 - pseudogene predicted gene, 19267
Gm46501 15 82433527 to 82436575 3048 + pseudogene predicted gene, 46501