Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:81871345-82217598

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118 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Phf5a 15 81864516 to 81871892 7376 - protein coding gene PHD finger protein 5A
Cpgi7400 15 81871609 to 81872857 1248 CpG island CpG island 7400
Tssr135509 15 81871644 to 81871709 65 - TSS region transcription start site region 135509
Tssr135510 15 81871883 to 81871916 33 - TSS region transcription start site region 135510
Aco2 15 81872463 to 81915137 42674 + protein coding gene aconitase 2, mitochondrial
Tssr132312 15 81872470 to 81872514 44 + TSS region transcription start site region 132312
Tssr132313 15 81910430 to 81910435 5 + TSS region transcription start site region 132313
Tssr132314 15 81912259 to 81912280 21 + TSS region transcription start site region 132314
Polr3h 15 81915030 to 81926243 11213 - protein coding gene polymerase (RNA) III (DNA directed) polypeptide H
Tssr135511 15 81920001 to 81920006 5 - TSS region transcription start site region 135511
Cpgi7401 15 81925529 to 81926401 872 CpG island CpG island 7401
Tssr135512 15 81926148 to 81926223 75 - TSS region transcription start site region 135512
Cia35 15 81927625 to 81927745 120 QTL collagen induced arthritis QTL 35
D15Mit118 15 81927625 to 81927745 120 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 118
Gm32167 15 81932063 to 81936720 4657 - lncRNA gene predicted gene, 32167
Tssr135513 15 81936695 to 81936716 21 - TSS region transcription start site region 135513
Tssr132315 15 81936753 to 81936839 86 + TSS region transcription start site region 132315
Csdc2 15 81936759 to 81950941 14182 + protein coding gene cold shock domain containing C2, RNA binding
Tssr132316 15 81936846 to 81936874 28 + TSS region transcription start site region 132316
Cpgi7402 15 81936874 to 81937094 220 CpG island CpG island 7402
Tssr132317 15 81936880 to 81936900 20 + TSS region transcription start site region 132317
Tssr132318 15 81936911 to 81936934 23 + TSS region transcription start site region 132318
Tssr132319 15 81949213 to 81949221 8 + TSS region transcription start site region 132319
Pmm1 15 81951108 to 81960930 9822 - protein coding gene phosphomannomutase 1
Tssr135514 15 81955703 to 81955732 29 - TSS region transcription start site region 135514
Tssr135515 15 81956197 to 81956241 44 - TSS region transcription start site region 135515
Cpgi7403 15 81960150 to 81961313 1163 CpG island CpG island 7403
Tssr135516 15 81960801 to 81960812 11 - TSS region transcription start site region 135516
Tssr135517 15 81960818 to 81960846 28 - TSS region transcription start site region 135517
Tssr135518 15 81960851 to 81960872 21 - TSS region transcription start site region 135518
Cyp2d67-ps 15 81967701 to 81968549 848 + pseudogene cytochrome P450, family 2, subfamily d, polypeptide 67, pseudogene
Tssr4663 15 81969319 to 81969365 46 - TSS region transcription start site region 4663
Tssr132320 15 81972365 to 81972379 14 + TSS region transcription start site region 132320
Gm5805 15 81972390 to 81972845 455 + pseudogene predicted gene 5805
Cpgi7404 15 81980461 to 81980804 343 CpG island CpG island 7404
Tssr132321 15 81980509 to 81980546 37 + TSS region transcription start site region 132321
1700029P11Rik 15 81980540 to 81981563 1023 + protein coding gene RIKEN cDNA 1700029P11 gene
Xrcc6 15 81987835 to 82040085 52250 + protein coding gene X-ray repair complementing defective repair in Chinese hamster cells 6
Tssr132322 15 81987835 to 81987848 13 + TSS region transcription start site region 132322
Tssr132323 15 81988283 to 81988286 3 + TSS region transcription start site region 132323
Desi1 15 81992523 to 82016220 23697 - protein coding gene desumoylating isopeptidase 1
D15Jcs153 15 82013580 to 82013686 106 DNA segment DNA segment, Chr 15, John C. Schimenti 153
Cpgi7405 15 82015265 to 82016793 1528 CpG island CpG island 7405
Tssr135519 15 82016087 to 82016129 42 - TSS region transcription start site region 135519
Tssr135520 15 82016134 to 82016170 36 - TSS region transcription start site region 135520
Tssr135521 15 82016174 to 82016202 28 - TSS region transcription start site region 135521
Tssr135522 15 82016203 to 82016217 14 - TSS region transcription start site region 135522
Tssr132324 15 82016378 to 82016419 41 + TSS region transcription start site region 132324
Tssr132325 15 82016420 to 82016459 39 + TSS region transcription start site region 132325
Tssr132326 15 82017075 to 82017087 12 + TSS region transcription start site region 132326
Tssr132327 15 82017108 to 82017115 7 + TSS region transcription start site region 132327
Tssr132328 15 82017805 to 82017808 3 + TSS region transcription start site region 132328
Tssr132329 15 82022693 to 82022726 33 + TSS region transcription start site region 132329
Tssr132330 15 82022740 to 82022757 17 + TSS region transcription start site region 132330
Tssr132331 15 82022776 to 82022801 25 + TSS region transcription start site region 132331
Tssr132332 15 82022826 to 82022840 14 + TSS region transcription start site region 132332
Tssr132333 15 82022857 to 82022872 15 + TSS region transcription start site region 132333
Tssr132334 15 82022923 to 82022934 11 + TSS region transcription start site region 132334
Tssr132335 15 82022954 to 82022965 11 + TSS region transcription start site region 132335
Tssr135523 15 82027849 to 82027860 11 - TSS region transcription start site region 135523
Tssr132336 15 82028025 to 82028046 21 + TSS region transcription start site region 132336
Tssr132337 15 82028054 to 82028075 21 + TSS region transcription start site region 132337
Tssr132338 15 82028089 to 82028094 5 + TSS region transcription start site region 132338
Tssr132339 15 82028111 to 82028133 22 + TSS region transcription start site region 132339
Tssr132340 15 82028508 to 82028512 4 + TSS region transcription start site region 132340
Tssr132341 15 82029203 to 82029213 10 + TSS region transcription start site region 132341
Tssr135524 15 82029586 to 82029604 18 - TSS region transcription start site region 135524
Tssr132342 15 82036449 to 82036472 23 + TSS region transcription start site region 132342
Snu13 15 82041345 to 82047598 6253 - protein coding gene SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)
Cpgi7406 15 82046573 to 82047795 1222 CpG island CpG island 7406
Tssr135525 15 82047545 to 82047563 18 - TSS region transcription start site region 135525
Tssr135526 15 82047582 to 82047610 28 - TSS region transcription start site region 135526
Gm49487 15 82053652 to 82054012 360 - pseudogene predicted gene, 49487
Gm49488 15 82055635 to 82055830 195 - pseudogene predicted gene, 49488
Gm49489 15 82056638 to 82056989 351 - pseudogene predicted gene, 49489
Tssr132343 15 82059137 to 82059140 3 + TSS region transcription start site region 132343
Tssr132344 15 82059144 to 82059158 14 + TSS region transcription start site region 132344
4930407I10Rik 15 82059151 to 82066538 7387 + protein coding gene RIKEN cDNA 4930407I10 gene
Tssr132345 15 82063903 to 82063908 5 + TSS region transcription start site region 132345
Cpgi7407 15 82069894 to 82070705 811 CpG island CpG island 7407
Mei1 15 82070057 to 82126817 56760 + protein coding gene meiotic double-stranded break formation protein 1
Cpgi7408 15 82127390 to 82128467 1077 CpG island CpG island 7408
Tssr132346 15 82127916 to 82128001 85 + TSS region transcription start site region 132346
Ccdc134 15 82127922 to 82142203 14281 + protein coding gene coiled-coil domain containing 134
Tssr132347 15 82146276 to 82146282 6 + TSS region transcription start site region 132347
Cpgi7409 15 82146585 to 82148248 1663 CpG island CpG island 7409
Tssr135527 15 82146789 to 82146819 30 - TSS region transcription start site region 135527
Tssr135528 15 82147042 to 82147059 17 - TSS region transcription start site region 135528
Tssr132348 15 82147238 to 82147275 37 + TSS region transcription start site region 132348
Srebf2 15 82147269 to 82205379 58110 + protein coding gene sterol regulatory element binding factor 2
Tssr132349 15 82147336 to 82147359 23 + TSS region transcription start site region 132349
Tssr132350 15 82147372 to 82147398 26 + TSS region transcription start site region 132350
Tssr135529 15 82147491 to 82147500 9 - TSS region transcription start site region 135529
Tssr135530 15 82147511 to 82147523 12 - TSS region transcription start site region 135530
Tssr132351 15 82147565 to 82147615 50 + TSS region transcription start site region 132351
Tssr132352 15 82147628 to 82147660 32 + TSS region transcription start site region 132352
Tssr132353 15 82149124 to 82149129 5 + TSS region transcription start site region 132353
Tssr135531 15 82166924 to 82166933 9 - TSS region transcription start site region 135531
Tssr132354 15 82167019 to 82167054 35 + TSS region transcription start site region 132354
Tssr132355 15 82169904 to 82169935 31 + TSS region transcription start site region 132355
Tssr132356 15 82169963 to 82169976 13 + TSS region transcription start site region 132356
Tssr132357 15 82169990 to 82170001 11 + TSS region transcription start site region 132357
Tssr132358 15 82170009 to 82170035 26 + TSS region transcription start site region 132358
Cpgi7410 15 82171097 to 82171344 247 CpG island CpG island 7410
Tssr132359 15 82171188 to 82171204 16 + TSS region transcription start site region 132359
Tssr132360 15 82171206 to 82171245 39 + TSS region transcription start site region 132360
Tssr4664 15 82181153 to 82181156 3 + TSS region transcription start site region 4664
Gm49502 15 82185516 to 82187625 2109 + unclassified gene predicted gene, 49502
Tssr4665 15 82197414 to 82197417 3 + TSS region transcription start site region 4665
Tssr132361 15 82197519 to 82197530 11 + TSS region transcription start site region 132361
Tssr4666 15 82197600 to 82197611 11 + TSS region transcription start site region 4666
Mir33 15 82198122 to 82198190 68 + miRNA gene microRNA 33
Shisa8 15 82206952 to 82212815 5863 - protein coding gene shisa family member 8
Cpgi7411 15 82207022 to 82208000 978 CpG island CpG island 7411
Cpgi7412 15 82211415 to 82213450 2035 CpG island CpG island 7412
Tssr135532 15 82212693 to 82212706 13 - TSS region transcription start site region 135532
Tssr135533 15 82212796 to 82212812 16 - TSS region transcription start site region 135533
Tssr135534 15 82212828 to 82212848 20 - TSS region transcription start site region 135534