Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:80916773-85862494

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1013 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Msq1 15 63517797 to 81202235 17684438 QTL MAV-1 susceptibility QTL 1
Tnrc6b 15 80711313 to 80941085 229772 + protein coding gene trinucleotide repeat containing 6b
Tssr132249 15 80930517 to 80930527 10 + TSS region transcription start site region 132249
Tssr132250 15 80930531 to 80930554 23 + TSS region transcription start site region 132250
Tssr132251 15 80931288 to 80931322 34 + TSS region transcription start site region 132251
Tssr132252 15 80937122 to 80937147 25 + TSS region transcription start site region 132252
Mir5113 15 80940039 to 80940120 81 + miRNA gene microRNA 5113
Cpgi7379 15 80948115 to 80948987 872 CpG island CpG island 7379
Tssr132253 15 80948484 to 80948549 65 + TSS region transcription start site region 132253
Adsl 15 80948490 to 80970946 22456 + protein coding gene adenylosuccinate lyase
Tssr132254 15 80952472 to 80952480 8 + TSS region transcription start site region 132254
Gm6612 15 80952505 to 80952899 394 + pseudogene predicted gene 6612
Cpgi7380 15 80977545 to 80978367 822 CpG island CpG island 7380
Tssr132255 15 80977608 to 80977619 11 + TSS region transcription start site region 132255
Sgsm3 15 80977765 to 81012290 34525 + protein coding gene small G protein signaling modulator 3
Tssr132256 15 80977780 to 80977845 65 + TSS region transcription start site region 132256
Tssr132257 15 80977873 to 80977876 3 + TSS region transcription start site region 132257
Gm31462 15 81005407 to 81006410 1003 - antisense lncRNA gene predicted gene, 31462
Mrtfa 15 81012281 to 81190757 178476 - protein coding gene myocardin related transcription factor A
Tssr135448 15 81018077 to 81018117 40 - TSS region transcription start site region 135448
Tssr132258 15 81039639 to 81039646 7 + TSS region transcription start site region 132258
Gm25131 15 81039643 to 81039793 150 + snRNA gene predicted gene, 25131
Tssr132259 15 81044689 to 81044700 11 + TSS region transcription start site region 132259
Tssr135449 15 81045451 to 81045465 14 - TSS region transcription start site region 135449
Tssr135450 15 81045467 to 81045540 73 - TSS region transcription start site region 135450
Tssr135451 15 81067009 to 81067020 11 - TSS region transcription start site region 135451
Tssr135452 15 81067022 to 81067037 15 - TSS region transcription start site region 135452
Tssr135453 15 81070943 to 81070948 5 - TSS region transcription start site region 135453
Tssr135454 15 81104989 to 81104994 5 - TSS region transcription start site region 135454
Tssr135455 15 81104999 to 81105069 70 - TSS region transcription start site region 135455
Tssr135456 15 81111499 to 81111505 6 - TSS region transcription start site region 135456
Gm49522 15 81115033 to 81115845 812 - unclassified gene predicted gene, 49522
Cpgi7381 15 81189929 to 81191319 1390 CpG island CpG island 7381
Tssr132260 15 81190496 to 81190505 9 + TSS region transcription start site region 132260
Tssr135457 15 81190701 to 81190719 18 - TSS region transcription start site region 135457
Tssr135458 15 81190720 to 81190768 48 - TSS region transcription start site region 135458
4930483J18Rik 15 81190853 to 81192757 1904 + lncRNA gene RIKEN cDNA 4930483J18 gene
D15Mit70 15 81202085 to 81202235 150 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 70
Gm49537 15 81208725 to 81209160 435 - pseudogene predicted gene, 49537
Gm31608 15 81217126 to 81229699 12573 + lncRNA gene predicted gene, 31608
Gm31750 15 81229712 to 81230571 859 + lncRNA gene predicted gene, 31750
Mchr1 15 81235499 to 81238964 3465 + protein coding gene melanin-concentrating hormone receptor 1
Cpgi7382 15 81235503 to 81235885 382 CpG island CpG island 7382
Tssr132261 15 81235600 to 81235628 28 + TSS region transcription start site region 132261
8430426J06Rik 15 81242654 to 81251862 9208 - lincRNA gene RIKEN cDNA 8430426J06 gene
cmy2 15 81245519 to 95314546 14069027 heritable phenotypic marker cardiomyopathy 2
Tssr135459 15 81247959 to 81247996 37 - TSS region transcription start site region 135459
Tssr135460 15 81251849 to 81251873 24 - TSS region transcription start site region 135460
Tssr132262 15 81259265 to 81259271 6 + TSS region transcription start site region 132262
Cpgi7383 15 81301240 to 81301416 176 CpG island CpG island 7383
Tssr132263 15 81301768 to 81301777 9 + TSS region transcription start site region 132263
Tssr132264 15 81301791 to 81301803 12 + TSS region transcription start site region 132264
Tssr135461 15 81302232 to 81302247 15 - TSS region transcription start site region 135461
Slc25a17 15 81318921 to 81360765 41844 - protein coding gene solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17
Tssr135462 15 81327302 to 81327328 26 - TSS region transcription start site region 135462
Cpgi7384 15 81360520 to 81361005 485 CpG island CpG island 7384
Tssr135463 15 81360739 to 81360816 77 - TSS region transcription start site region 135463
Tssr135464 15 81360831 to 81360853 22 - TSS region transcription start site region 135464
Tssr135465 15 81364811 to 81364815 4 - TSS region transcription start site region 135465
St13 15 81365044 to 81399694 34650 - protein coding gene suppression of tumorigenicity 13
Tssr135466 15 81365333 to 81365362 29 - TSS region transcription start site region 135466
Tssr135467 15 81374873 to 81374896 23 - TSS region transcription start site region 135467
Tssr135468 15 81380731 to 81380742 11 - TSS region transcription start site region 135468
Tssr135469 15 81392311 to 81392316 5 - TSS region transcription start site region 135469
Tssr135470 15 81398296 to 81398299 3 - TSS region transcription start site region 135470
Cpgi7385 15 81399322 to 81400311 989 CpG island CpG island 7385
Tssr135471 15 81399596 to 81399652 56 - TSS region transcription start site region 135471
Tssr135472 15 81399656 to 81399732 76 - TSS region transcription start site region 135472
Tssr135473 15 81399750 to 81399759 9 - TSS region transcription start site region 135473
Tssr135474 15 81399780 to 81399791 11 - TSS region transcription start site region 135474
Tssr135475 15 81399795 to 81399832 37 - TSS region transcription start site region 135475
Tssr135476 15 81400053 to 81400093 40 - TSS region transcription start site region 135476
Tssr132265 15 81400132 to 81400215 83 + TSS region transcription start site region 132265
Xpnpep3 15 81400132 to 81457476 57344 + protein coding gene X-prolyl aminopeptidase 3, mitochondrial
Dnajb7 15 81407088 to 81408273 1185 - protein coding gene DnaJ heat shock protein family (Hsp40) member B7
Tssr135477 15 81408252 to 81408257 5 - TSS region transcription start site region 135477
Tssr135478 15 81408261 to 81408273 12 - TSS region transcription start site region 135478
Tssr135479 15 81408281 to 81408301 20 - TSS region transcription start site region 135479
Gm17025 15 81415560 to 81419188 3628 - antisense lncRNA gene predicted gene 17025
Tssr135480 15 81421473 to 81421496 23 - TSS region transcription start site region 135480
Tssr135481 15 81421678 to 81421690 12 - TSS region transcription start site region 135481
Cpgi7386 15 81465807 to 81466984 1177 CpG island CpG island 7386
Tssr135482 15 81466043 to 81466057 14 - TSS region transcription start site region 135482
Tssr132266 15 81466309 to 81466322 13 + TSS region transcription start site region 132266
Rbx1 15 81466316 to 81476369 10053 + protein coding gene ring-box 1
Tssr132267 15 81466339 to 81466365 26 + TSS region transcription start site region 132267
Tssr132268 15 81466665 to 81466711 46 + TSS region transcription start site region 132268
Cpgi7387 15 81481259 to 81481453 194 CpG island CpG island 7387
Gm49406 15 81485972 to 81486381 409 - pseudogene predicted gene, 49406
Gm5218 15 81499081 to 81499545 464 - pseudogene predicted gene 5218
Cpgi7388 15 81514166 to 81514356 190 CpG island CpG island 7388
Tssr135483 15 81514260 to 81514281 21 - TSS region transcription start site region 135483
Tssr4662 15 81522093 to 81522104 11 - TSS region transcription start site region 4662
Cpgi7389 15 81522225 to 81523537 1312 CpG island CpG island 7389
Tssr132269 15 81522338 to 81522391 53 + TSS region transcription start site region 132269
Tssr135484 15 81522921 to 81522933 12 - TSS region transcription start site region 135484
Tssr135485 15 81522940 to 81522960 20 - TSS region transcription start site region 135485
Tssr135486 15 81523261 to 81523312 51 - TSS region transcription start site region 135486
Tssr132270 15 81523366 to 81523377 11 + TSS region transcription start site region 132270
Tssr132271 15 81523388 to 81523446 58 + TSS region transcription start site region 132271
Tssr132272 15 81523832 to 81523871 39 + TSS region transcription start site region 132272
Tssr135487 15 81528654 to 81528665 11 - TSS region transcription start site region 135487
1110025M09Rik 15 81584174 to 81585028 854 - unclassified gene RIKEN cDNA 1110025M09 gene
Cpgi7390 15 81584969 to 81586806 1837 CpG island CpG island 7390
Tssr132273 15 81585338 to 81585381 43 + TSS region transcription start site region 132273
Tssr132274 15 81585459 to 81585508 49 + TSS region transcription start site region 132274
Tssr135488 15 81586032 to 81586045 13 - TSS region transcription start site region 135488
Tssr135489 15 81586051 to 81586078 27 - TSS region transcription start site region 135489
Gm23880 15 81586133 to 81586186 53 + miRNA gene predicted gene, 23880
Tssr132275 15 81586206 to 81586250 44 + TSS region transcription start site region 132275
Ep300 15 81586214 to 81652077 65863 + protein coding gene E1A binding protein p300
Tssr135490 15 81586300 to 81586367 67 - TSS region transcription start site region 135490
Tssr135491 15 81586368 to 81586386 18 - TSS region transcription start site region 135491
Tssr132276 15 81586411 to 81586512 101 + TSS region transcription start site region 132276
Tssr135492 15 81586470 to 81586496 26 - TSS region transcription start site region 135492
Tssr132277 15 81586597 to 81586609 12 + TSS region transcription start site region 132277
Tssr132278 15 81588950 to 81588958 8 + TSS region transcription start site region 132278
Gm22067 15 81592093 to 81592199 106 + snRNA gene predicted gene, 22067
Tssr132279 15 81608083 to 81608088 5 + TSS region transcription start site region 132279
Tssr132280 15 81616759 to 81616776 17 + TSS region transcription start site region 132280
Tssr132281 15 81616812 to 81616826 14 + TSS region transcription start site region 132281
Tssr132282 15 81626334 to 81626358 24 + TSS region transcription start site region 132282
Tssr132283 15 81626364 to 81626389 25 + TSS region transcription start site region 132283
Tssr132284 15 81626432 to 81626448 16 + TSS region transcription start site region 132284
Tssr132285 15 81627151 to 81627253 102 + TSS region transcription start site region 132285
Tssr132286 15 81627300 to 81627318 18 + TSS region transcription start site region 132286
Tssr132287 15 81648796 to 81648811 15 + TSS region transcription start site region 132287
Gm49444 15 81656185 to 81656399 214 - pseudogene predicted gene, 49444
Cpgi7391 15 81663728 to 81664705 977 CpG island CpG island 7391
L3mbtl2 15 81663889 to 81688315 24426 + protein coding gene L3MBTL2 polycomb repressive complex 1 subunit
Tssr132288 15 81663914 to 81663958 44 + TSS region transcription start site region 132288
Tssr132289 15 81663974 to 81663985 11 + TSS region transcription start site region 132289
Gm18284 15 81674260 to 81674878 618 - pseudogene predicted gene, 18284
Chadl 15 81686166 to 81697376 11210 - protein coding gene chondroadherin-like
Cpgi7392 15 81693310 to 81695266 1956 CpG island CpG island 7392
Tssr135493 15 81694195 to 81694241 46 - TSS region transcription start site region 135493
Tssr135494 15 81697256 to 81697298 42 - TSS region transcription start site region 135494
Tssr135495 15 81697311 to 81697324 13 - TSS region transcription start site region 135495
Rangap1 15 81704248 to 81730798 26550 - protein coding gene RAN GTPase activating protein 1
Tssr135496 15 81712555 to 81712574 19 - TSS region transcription start site region 135496
Tssr135497 15 81726221 to 81726226 5 - TSS region transcription start site region 135497
Tssr135498 15 81726229 to 81726270 41 - TSS region transcription start site region 135498
Tssr132290 15 81726374 to 81726394 20 + TSS region transcription start site region 132290
Cpgi7393 15 81729206 to 81730277 1071 CpG island CpG island 7393
Tssr135499 15 81729833 to 81729844 11 - TSS region transcription start site region 135499
Tssr135500 15 81729851 to 81729854 3 - TSS region transcription start site region 135500
Tssr135501 15 81729864 to 81729913 49 - TSS region transcription start site region 135501
Cpgi7394 15 81744936 to 81746208 1272 CpG island CpG island 7394
Tssr132291 15 81745042 to 81745051 9 + TSS region transcription start site region 132291
Zc3h7b 15 81745057 to 81796260 51203 + protein coding gene zinc finger CCCH type containing 7B
Tssr132292 15 81745057 to 81745131 74 + TSS region transcription start site region 132292
Tssr132293 15 81745139 to 81745169 30 + TSS region transcription start site region 132293
Tssr132294 15 81745172 to 81745188 16 + TSS region transcription start site region 132294
Tssr132295 15 81772291 to 81772320 29 + TSS region transcription start site region 132295
Tssr132296 15 81772333 to 81772346 13 + TSS region transcription start site region 132296
Tssr132297 15 81776272 to 81776279 7 + TSS region transcription start site region 132297
Tssr132298 15 81776293 to 81776322 29 + TSS region transcription start site region 132298
Gm17597 15 81800791 to 81802613 1822 - antisense lncRNA gene predicted gene, 17597
Tssr132299 15 81802570 to 81802577 7 + TSS region transcription start site region 132299
Tef 15 81802673 to 81826863 24190 + protein coding gene thyrotroph embryonic factor
Tssr132300 15 81802686 to 81802695 9 + TSS region transcription start site region 132300
Tssr132301 15 81802709 to 81802722 13 + TSS region transcription start site region 132301
Tssr132302 15 81802735 to 81802758 23 + TSS region transcription start site region 132302
Tssr132303 15 81802762 to 81802770 8 + TSS region transcription start site region 132303
Tssr132304 15 81802773 to 81802785 12 + TSS region transcription start site region 132304
Tssr132305 15 81802794 to 81802805 11 + TSS region transcription start site region 132305
Cpgi7395 15 81810302 to 81812032 1730 CpG island CpG island 7395
Tssr135502 15 81810857 to 81810881 24 - TSS region transcription start site region 135502
Tssr132306 15 81811448 to 81811491 43 + TSS region transcription start site region 132306
Tssr132307 15 81811512 to 81811521 9 + TSS region transcription start site region 132307
Tssr132308 15 81815103 to 81815132 29 + TSS region transcription start site region 132308
Cpgi7396 15 81831169 to 81831384 215 CpG island CpG island 7396
Tssr132309 15 81835880 to 81835906 26 + TSS region transcription start site region 132309
Cpgi7397 15 81836340 to 81836797 457 CpG island CpG island 7397
Gm8444 15 81843346 to 81843713 367 - pseudogene predicted gene 8444
Tssr135503 15 81843749 to 81843755 6 - TSS region transcription start site region 135503
Tob2 15 81848270 to 81858326 10056 - protein coding gene transducer of ERBB2, 2
Tssr132310 15 81850308 to 81850325 17 + TSS region transcription start site region 132310
Cpgi7398 15 81856051 to 81856481 430 CpG island CpG island 7398
Gm49476 15 81857741 to 81858305 564 + antisense lncRNA gene predicted gene, 49476
Cpgi7399 15 81857746 to 81859957 2211 CpG island CpG island 7399
Tssr135504 15 81858262 to 81858280 18 - TSS region transcription start site region 135504
Tssr135505 15 81858317 to 81858328 11 - TSS region transcription start site region 135505
Tssr132311 15 81858392 to 81858437 45 + TSS region transcription start site region 132311
Tssr135506 15 81858532 to 81858541 9 - TSS region transcription start site region 135506
Tssr135507 15 81858786 to 81858803 17 - TSS region transcription start site region 135507
Phf5a 15 81864516 to 81871892 7376 - protein coding gene PHD finger protein 5A
Tssr135508 15 81865621 to 81865634 13 - TSS region transcription start site region 135508
Cpgi7400 15 81871609 to 81872857 1248 CpG island CpG island 7400
Tssr135509 15 81871644 to 81871709 65 - TSS region transcription start site region 135509
Tssr135510 15 81871883 to 81871916 33 - TSS region transcription start site region 135510
Aco2 15 81872463 to 81915137 42674 + protein coding gene aconitase 2, mitochondrial
Tssr132312 15 81872470 to 81872514 44 + TSS region transcription start site region 132312
Tssr132313 15 81910430 to 81910435 5 + TSS region transcription start site region 132313
Tssr132314 15 81912259 to 81912280 21 + TSS region transcription start site region 132314
Polr3h 15 81915030 to 81926243 11213 - protein coding gene polymerase (RNA) III (DNA directed) polypeptide H
Tssr135511 15 81920001 to 81920006 5 - TSS region transcription start site region 135511
Cpgi7401 15 81925529 to 81926401 872 CpG island CpG island 7401
Tssr135512 15 81926148 to 81926223 75 - TSS region transcription start site region 135512
D15Mit118 15 81927625 to 81927745 120 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 118