Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:80700784-83991543

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720 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Msq1 15 63517797 to 81202235 17684438 QTL MAV-1 susceptibility QTL 1
Tssr135443 15 80701567 to 80701579 12 - TSS region transcription start site region 135443
Cpgi7377 15 80710758 to 80712366 1608 CpG island CpG island 7377
Tssr132238 15 80711241 to 80711265 24 + TSS region transcription start site region 132238
Tssr132239 15 80711292 to 80711340 48 + TSS region transcription start site region 132239
Tnrc6b 15 80711313 to 80941085 229772 + protein coding gene trinucleotide repeat containing 6b
Tssr135444 15 80711994 to 80712005 11 - TSS region transcription start site region 135444
Gm49512 15 80712271 to 80713686 1415 + sense intronic lncRNA gene predicted gene, 49512
Tssr132240 15 80722518 to 80722522 4 + TSS region transcription start site region 132240
Tssr4661 15 80743020 to 80743027 7 - TSS region transcription start site region 4661
Tssr135445 15 80743653 to 80743673 20 - TSS region transcription start site region 135445
Tssr132241 15 80743793 to 80743838 45 + TSS region transcription start site region 132241
Tssr132242 15 80762424 to 80762457 33 + TSS region transcription start site region 132242
Tssr135446 15 80798452 to 80798465 13 - TSS region transcription start site region 135446
Tssr132243 15 80798586 to 80798608 22 + TSS region transcription start site region 132243
Tssr132244 15 80798627 to 80798652 25 + TSS region transcription start site region 132244
D15Mit32 15 80814519 to 80814647 128 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 32
D15Mit31 15 80814519 to 80814706 187 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 31
Tssr132245 15 80820403 to 80820415 12 + TSS region transcription start site region 132245
Tssr132246 15 80820422 to 80820434 12 + TSS region transcription start site region 132246
D230044B12Rik 15 80831579 to 80833212 1633 unclassified gene RIKEN cDNA D230044B12 gene
Cpgi7378 15 80876292 to 80876623 331 CpG island CpG island 7378
B130063F10Rik 15 80890293 to 80893149 2856 unclassified gene RIKEN cDNA B130063F10 gene
D15Mit69 15 80896284 to 80896417 133 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 69
Tssr135447 15 80896888 to 80896902 14 - TSS region transcription start site region 135447
Tssr132247 15 80897193 to 80897198 5 + TSS region transcription start site region 132247
Tssr132248 15 80902392 to 80902407 15 + TSS region transcription start site region 132248
Tssr132249 15 80930517 to 80930527 10 + TSS region transcription start site region 132249
Tssr132250 15 80930531 to 80930554 23 + TSS region transcription start site region 132250
Tssr132251 15 80931288 to 80931322 34 + TSS region transcription start site region 132251
Tssr132252 15 80937122 to 80937147 25 + TSS region transcription start site region 132252
Mir5113 15 80940039 to 80940120 81 + miRNA gene microRNA 5113
Cpgi7379 15 80948115 to 80948987 872 CpG island CpG island 7379
Tssr132253 15 80948484 to 80948549 65 + TSS region transcription start site region 132253
Adsl 15 80948490 to 80970946 22456 + protein coding gene adenylosuccinate lyase
Tssr132254 15 80952472 to 80952480 8 + TSS region transcription start site region 132254
Gm6612 15 80952505 to 80952899 394 + pseudogene predicted gene 6612
Cpgi7380 15 80977545 to 80978367 822 CpG island CpG island 7380
Tssr132255 15 80977608 to 80977619 11 + TSS region transcription start site region 132255
Sgsm3 15 80977765 to 81012290 34525 + protein coding gene small G protein signaling modulator 3
Tssr132256 15 80977780 to 80977845 65 + TSS region transcription start site region 132256
Tssr132257 15 80977873 to 80977876 3 + TSS region transcription start site region 132257
Gm31462 15 81005407 to 81006410 1003 - antisense lncRNA gene predicted gene, 31462
Mrtfa 15 81012281 to 81190757 178476 - protein coding gene myocardin related transcription factor A
Tssr135448 15 81018077 to 81018117 40 - TSS region transcription start site region 135448
Tssr132258 15 81039639 to 81039646 7 + TSS region transcription start site region 132258
Gm25131 15 81039643 to 81039793 150 + snRNA gene predicted gene, 25131
Tssr132259 15 81044689 to 81044700 11 + TSS region transcription start site region 132259
Tssr135449 15 81045451 to 81045465 14 - TSS region transcription start site region 135449
Tssr135450 15 81045467 to 81045540 73 - TSS region transcription start site region 135450
Tssr135451 15 81067009 to 81067020 11 - TSS region transcription start site region 135451
Tssr135452 15 81067022 to 81067037 15 - TSS region transcription start site region 135452
Tssr135453 15 81070943 to 81070948 5 - TSS region transcription start site region 135453
Tssr135454 15 81104989 to 81104994 5 - TSS region transcription start site region 135454
Tssr135455 15 81104999 to 81105069 70 - TSS region transcription start site region 135455
Tssr135456 15 81111499 to 81111505 6 - TSS region transcription start site region 135456
Gm49522 15 81115033 to 81115845 812 - unclassified gene predicted gene, 49522
Cpgi7381 15 81189929 to 81191319 1390 CpG island CpG island 7381
Tssr132260 15 81190496 to 81190505 9 + TSS region transcription start site region 132260
Tssr135457 15 81190701 to 81190719 18 - TSS region transcription start site region 135457
Tssr135458 15 81190720 to 81190768 48 - TSS region transcription start site region 135458
4930483J18Rik 15 81190853 to 81192757 1904 + lncRNA gene RIKEN cDNA 4930483J18 gene
D15Mit70 15 81202085 to 81202235 150 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 70
Gm49537 15 81208725 to 81209160 435 - pseudogene predicted gene, 49537
Gm31608 15 81217126 to 81229699 12573 + lncRNA gene predicted gene, 31608
Gm31750 15 81229712 to 81230571 859 + lncRNA gene predicted gene, 31750
Mchr1 15 81235499 to 81238964 3465 + protein coding gene melanin-concentrating hormone receptor 1
Cpgi7382 15 81235503 to 81235885 382 CpG island CpG island 7382
Tssr132261 15 81235600 to 81235628 28 + TSS region transcription start site region 132261
8430426J06Rik 15 81242654 to 81251862 9208 - lincRNA gene RIKEN cDNA 8430426J06 gene
cmy2 15 81245519 to 95314546 14069027 heritable phenotypic marker cardiomyopathy 2
Tssr135459 15 81247959 to 81247996 37 - TSS region transcription start site region 135459
Tssr135460 15 81251849 to 81251873 24 - TSS region transcription start site region 135460
Tssr132262 15 81259265 to 81259271 6 + TSS region transcription start site region 132262
Cpgi7383 15 81301240 to 81301416 176 CpG island CpG island 7383
Tssr132263 15 81301768 to 81301777 9 + TSS region transcription start site region 132263
Tssr132264 15 81301791 to 81301803 12 + TSS region transcription start site region 132264
Tssr135461 15 81302232 to 81302247 15 - TSS region transcription start site region 135461
Slc25a17 15 81318921 to 81360765 41844 - protein coding gene solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17
Tssr135462 15 81327302 to 81327328 26 - TSS region transcription start site region 135462
Cpgi7384 15 81360520 to 81361005 485 CpG island CpG island 7384
Tssr135463 15 81360739 to 81360816 77 - TSS region transcription start site region 135463
Tssr135464 15 81360831 to 81360853 22 - TSS region transcription start site region 135464
Tssr135465 15 81364811 to 81364815 4 - TSS region transcription start site region 135465
St13 15 81365044 to 81399694 34650 - protein coding gene suppression of tumorigenicity 13
Tssr135466 15 81365333 to 81365362 29 - TSS region transcription start site region 135466
Tssr135467 15 81374873 to 81374896 23 - TSS region transcription start site region 135467
Tssr135468 15 81380731 to 81380742 11 - TSS region transcription start site region 135468
Tssr135469 15 81392311 to 81392316 5 - TSS region transcription start site region 135469
Tssr135470 15 81398296 to 81398299 3 - TSS region transcription start site region 135470
Cpgi7385 15 81399322 to 81400311 989 CpG island CpG island 7385
Tssr135471 15 81399596 to 81399652 56 - TSS region transcription start site region 135471
Tssr135472 15 81399656 to 81399732 76 - TSS region transcription start site region 135472
Tssr135473 15 81399750 to 81399759 9 - TSS region transcription start site region 135473
Tssr135474 15 81399780 to 81399791 11 - TSS region transcription start site region 135474
Tssr135475 15 81399795 to 81399832 37 - TSS region transcription start site region 135475
Tssr135476 15 81400053 to 81400093 40 - TSS region transcription start site region 135476
Xpnpep3 15 81400132 to 81457476 57344 + protein coding gene X-prolyl aminopeptidase 3, mitochondrial
Tssr132265 15 81400132 to 81400215 83 + TSS region transcription start site region 132265
Dnajb7 15 81407088 to 81408273 1185 - protein coding gene DnaJ heat shock protein family (Hsp40) member B7
Tssr135477 15 81408252 to 81408257 5 - TSS region transcription start site region 135477
Tssr135478 15 81408261 to 81408273 12 - TSS region transcription start site region 135478
Tssr135479 15 81408281 to 81408301 20 - TSS region transcription start site region 135479
Gm17025 15 81415560 to 81419188 3628 - antisense lncRNA gene predicted gene 17025
Tssr135480 15 81421473 to 81421496 23 - TSS region transcription start site region 135480
Tssr135481 15 81421678 to 81421690 12 - TSS region transcription start site region 135481
Cpgi7386 15 81465807 to 81466984 1177 CpG island CpG island 7386
Tssr135482 15 81466043 to 81466057 14 - TSS region transcription start site region 135482
Tssr132266 15 81466309 to 81466322 13 + TSS region transcription start site region 132266
Rbx1 15 81466316 to 81476369 10053 + protein coding gene ring-box 1
Tssr132267 15 81466339 to 81466365 26 + TSS region transcription start site region 132267
Tssr132268 15 81466665 to 81466711 46 + TSS region transcription start site region 132268
Cpgi7387 15 81481259 to 81481453 194 CpG island CpG island 7387
Gm49406 15 81485972 to 81486381 409 - pseudogene predicted gene, 49406
Gm5218 15 81499081 to 81499545 464 - pseudogene predicted gene 5218
Cpgi7388 15 81514166 to 81514356 190 CpG island CpG island 7388
Tssr135483 15 81514260 to 81514281 21 - TSS region transcription start site region 135483
Tssr4662 15 81522093 to 81522104 11 - TSS region transcription start site region 4662
Cpgi7389 15 81522225 to 81523537 1312 CpG island CpG island 7389
Tssr132269 15 81522338 to 81522391 53 + TSS region transcription start site region 132269
Tssr135484 15 81522921 to 81522933 12 - TSS region transcription start site region 135484
Tssr135485 15 81522940 to 81522960 20 - TSS region transcription start site region 135485
Tssr135486 15 81523261 to 81523312 51 - TSS region transcription start site region 135486
Tssr132270 15 81523366 to 81523377 11 + TSS region transcription start site region 132270
Tssr132271 15 81523388 to 81523446 58 + TSS region transcription start site region 132271
Tssr132272 15 81523832 to 81523871 39 + TSS region transcription start site region 132272
Tssr135487 15 81528654 to 81528665 11 - TSS region transcription start site region 135487
1110025M09Rik 15 81584174 to 81585028 854 - unclassified gene RIKEN cDNA 1110025M09 gene
Cpgi7390 15 81584969 to 81586806 1837 CpG island CpG island 7390
Tssr132273 15 81585338 to 81585381 43 + TSS region transcription start site region 132273
Tssr132274 15 81585459 to 81585508 49 + TSS region transcription start site region 132274
Tssr135488 15 81586032 to 81586045 13 - TSS region transcription start site region 135488
Tssr135489 15 81586051 to 81586078 27 - TSS region transcription start site region 135489
Gm23880 15 81586133 to 81586186 53 + miRNA gene predicted gene, 23880
Tssr132275 15 81586206 to 81586250 44 + TSS region transcription start site region 132275
Ep300 15 81586214 to 81652077 65863 + protein coding gene E1A binding protein p300
Tssr135490 15 81586300 to 81586367 67 - TSS region transcription start site region 135490
Tssr135491 15 81586368 to 81586386 18 - TSS region transcription start site region 135491
Tssr132276 15 81586411 to 81586512 101 + TSS region transcription start site region 132276
Tssr135492 15 81586470 to 81586496 26 - TSS region transcription start site region 135492
Tssr132277 15 81586597 to 81586609 12 + TSS region transcription start site region 132277
Tssr132278 15 81588950 to 81588958 8 + TSS region transcription start site region 132278
Gm22067 15 81592093 to 81592199 106 + snRNA gene predicted gene, 22067
Tssr132279 15 81608083 to 81608088 5 + TSS region transcription start site region 132279
Tssr132280 15 81616759 to 81616776 17 + TSS region transcription start site region 132280
Tssr132281 15 81616812 to 81616826 14 + TSS region transcription start site region 132281
Tssr132282 15 81626334 to 81626358 24 + TSS region transcription start site region 132282
Tssr132283 15 81626364 to 81626389 25 + TSS region transcription start site region 132283
Tssr132284 15 81626432 to 81626448 16 + TSS region transcription start site region 132284
Tssr132285 15 81627151 to 81627253 102 + TSS region transcription start site region 132285
Tssr132286 15 81627300 to 81627318 18 + TSS region transcription start site region 132286
Tssr132287 15 81648796 to 81648811 15 + TSS region transcription start site region 132287
Gm49444 15 81656185 to 81656399 214 - pseudogene predicted gene, 49444
Cpgi7391 15 81663728 to 81664705 977 CpG island CpG island 7391
L3mbtl2 15 81663889 to 81688315 24426 + protein coding gene L3MBTL2 polycomb repressive complex 1 subunit
Tssr132288 15 81663914 to 81663958 44 + TSS region transcription start site region 132288
Tssr132289 15 81663974 to 81663985 11 + TSS region transcription start site region 132289
Gm18284 15 81674260 to 81674878 618 - pseudogene predicted gene, 18284
Chadl 15 81686166 to 81697376 11210 - protein coding gene chondroadherin-like
Cpgi7392 15 81693310 to 81695266 1956 CpG island CpG island 7392
Tssr135493 15 81694195 to 81694241 46 - TSS region transcription start site region 135493
Tssr135494 15 81697256 to 81697298 42 - TSS region transcription start site region 135494
Tssr135495 15 81697311 to 81697324 13 - TSS region transcription start site region 135495
Rangap1 15 81704248 to 81730798 26550 - protein coding gene RAN GTPase activating protein 1
Tssr135496 15 81712555 to 81712574 19 - TSS region transcription start site region 135496
Tssr135497 15 81726221 to 81726226 5 - TSS region transcription start site region 135497
Tssr135498 15 81726229 to 81726270 41 - TSS region transcription start site region 135498
Tssr132290 15 81726374 to 81726394 20 + TSS region transcription start site region 132290
Cpgi7393 15 81729206 to 81730277 1071 CpG island CpG island 7393
Tssr135499 15 81729833 to 81729844 11 - TSS region transcription start site region 135499
Tssr135500 15 81729851 to 81729854 3 - TSS region transcription start site region 135500
Tssr135501 15 81729864 to 81729913 49 - TSS region transcription start site region 135501
Cpgi7394 15 81744936 to 81746208 1272 CpG island CpG island 7394
Tssr132291 15 81745042 to 81745051 9 + TSS region transcription start site region 132291
Tssr132292 15 81745057 to 81745131 74 + TSS region transcription start site region 132292
Zc3h7b 15 81745057 to 81796260 51203 + protein coding gene zinc finger CCCH type containing 7B
Tssr132293 15 81745139 to 81745169 30 + TSS region transcription start site region 132293
Tssr132294 15 81745172 to 81745188 16 + TSS region transcription start site region 132294
Tssr132295 15 81772291 to 81772320 29 + TSS region transcription start site region 132295
Tssr132296 15 81772333 to 81772346 13 + TSS region transcription start site region 132296
Tssr132297 15 81776272 to 81776279 7 + TSS region transcription start site region 132297
Tssr132298 15 81776293 to 81776322 29 + TSS region transcription start site region 132298
Gm17597 15 81800791 to 81802613 1822 - antisense lncRNA gene predicted gene, 17597
Tssr132299 15 81802570 to 81802577 7 + TSS region transcription start site region 132299
Tef 15 81802673 to 81826863 24190 + protein coding gene thyrotroph embryonic factor
Tssr132300 15 81802686 to 81802695 9 + TSS region transcription start site region 132300
Tssr132301 15 81802709 to 81802722 13 + TSS region transcription start site region 132301
Tssr132302 15 81802735 to 81802758 23 + TSS region transcription start site region 132302
Tssr132303 15 81802762 to 81802770 8 + TSS region transcription start site region 132303
Tssr132304 15 81802773 to 81802785 12 + TSS region transcription start site region 132304
Tssr132305 15 81802794 to 81802805 11 + TSS region transcription start site region 132305
Cpgi7395 15 81810302 to 81812032 1730 CpG island CpG island 7395
Tssr135502 15 81810857 to 81810881 24 - TSS region transcription start site region 135502
Tssr132306 15 81811448 to 81811491 43 + TSS region transcription start site region 132306
Tssr132307 15 81811512 to 81811521 9 + TSS region transcription start site region 132307
Tssr132308 15 81815103 to 81815132 29 + TSS region transcription start site region 132308
Cpgi7396 15 81831169 to 81831384 215 CpG island CpG island 7396
Tssr132309 15 81835880 to 81835906 26 + TSS region transcription start site region 132309
Cpgi7397 15 81836340 to 81836797 457 CpG island CpG island 7397
Gm8444 15 81843346 to 81843713 367 - pseudogene predicted gene 8444