Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:80193859-80524078

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mgat3 15 80173721 to 80215519 41798 + protein coding gene mannoside acetylglucosaminyltransferase 3
Cpgi7367 15 80211158 to 80212320 1162 CpG island CpG island 7367
Tssr132190 15 80212112 to 80212137 25 + TSS region transcription start site region 132190
Tssr135421 15 80219293 to 80219332 39 - TSS region transcription start site region 135421
Tssr135422 15 80219374 to 80219389 15 - TSS region transcription start site region 135422
Tssr132191 15 80219578 to 80219602 24 + TSS region transcription start site region 132191
Tssr135423 15 80219854 to 80219862 8 - TSS region transcription start site region 135423
Tssr132192 15 80221890 to 80221895 5 + TSS region transcription start site region 132192
Gm46521 15 80226323 to 80231381 5058 + lncRNA gene predicted gene, 46521
4930588D02Rik 15 80227951 to 80228414 463 - unclassified gene RIKEN cDNA 4930588D02 gene
Tssr135424 15 80228408 to 80228419 11 - TSS region transcription start site region 135424
Tssr135425 15 80228428 to 80228440 12 - TSS region transcription start site region 135425
Gm8375 15 80229127 to 80229923 796 - pseudogene predicted gene 8375
Tssr135426 15 80229950 to 80229953 3 - TSS region transcription start site region 135426
Cpgi7368 15 80233752 to 80234582 830 CpG island CpG island 7368
Mief1 15 80234018 to 80253371 19353 + protein coding gene mitochondrial elongation factor 1
Tssr132193 15 80234047 to 80234064 17 + TSS region transcription start site region 132193
Tssr132194 15 80234071 to 80234146 75 + TSS region transcription start site region 132194
Tssr135427 15 80235315 to 80235328 13 - TSS region transcription start site region 135427
Tssr135428 15 80235377 to 80235392 15 - TSS region transcription start site region 135428
Tssr132195 15 80235495 to 80235517 22 + TSS region transcription start site region 132195
Tssr132196 15 80235573 to 80235594 21 + TSS region transcription start site region 132196
D15Mit261 15 80236267 to 80236391 124 DNA segment DNA Segment, Chr 15 Massachusetts Institute of Technology 261
Tssr135429 15 80239873 to 80239885 12 - TSS region transcription start site region 135429
Tssr135430 15 80239890 to 80239901 11 - TSS region transcription start site region 135430
Tssr132197 15 80242572 to 80242576 4 + TSS region transcription start site region 132197
Tssr132198 15 80250383 to 80250387 4 + TSS region transcription start site region 132198
Cpgi7369 15 80254826 to 80256353 1527 CpG island CpG island 7369
Tssr135431 15 80254963 to 80255000 37 - TSS region transcription start site region 135431
Tssr135432 15 80255006 to 80255018 12 - TSS region transcription start site region 135432
Tssr132199 15 80255170 to 80255181 11 + TSS region transcription start site region 132199
Atf4 15 80255184 to 80257541 2357 + protein coding gene activating transcription factor 4
Tssr132200 15 80255248 to 80255263 15 + TSS region transcription start site region 132200
Tssr132201 15 80255301 to 80255321 20 + TSS region transcription start site region 132201
Tssr132202 15 80255490 to 80255511 21 + TSS region transcription start site region 132202
Tssr135433 15 80255845 to 80255864 19 - TSS region transcription start site region 135433
Tssr132203 15 80256017 to 80256078 61 + TSS region transcription start site region 132203
Tssr132204 15 80256337 to 80256349 12 + TSS region transcription start site region 132204
Tssr132205 15 80256904 to 80256920 16 + TSS region transcription start site region 132205
Tssr132206 15 80257082 to 80257135 53 + TSS region transcription start site region 132206
Tssr132207 15 80257165 to 80257186 21 + TSS region transcription start site region 132207
Tssr135434 15 80257533 to 80257541 8 - TSS region transcription start site region 135434
Rps19bp1 15 80260614 to 80264306 3692 - protein coding gene ribosomal protein S19 binding protein 1
Cpgi7370 15 80263683 to 80264549 866 CpG island CpG island 7370
Tssr135435 15 80264276 to 80264322 46 - TSS region transcription start site region 135435
D15Mit2 15 80279702 to 80279794 92 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 2
Faq9 15 80279702 to 80279794 92 QTL fluctuating asymmetry QTL 9
Cpgi7371 15 80286715 to 80288417 1702 CpG island CpG island 7371
Tssr132208 15 80287234 to 80287252 18 + TSS region transcription start site region 132208
Cacna1i 15 80287238 to 80398279 111041 + protein coding gene calcium channel, voltage-dependent, alpha 1I subunit
Tssr132209 15 80287269 to 80287293 24 + TSS region transcription start site region 132209
Tssr132210 15 80287301 to 80287313 12 + TSS region transcription start site region 132210
Tssr132211 15 80287509 to 80287535 26 + TSS region transcription start site region 132211
Gm31319 15 80287868 to 80292521 4653 - lncRNA gene predicted gene, 31319
Tssr132212 15 80320153 to 80320166 13 + TSS region transcription start site region 132212
Tssr132213 15 80320181 to 80320203 22 + TSS region transcription start site region 132213
Tssr132214 15 80320257 to 80320304 47 + TSS region transcription start site region 132214
Cpgi7372 15 80358859 to 80359078 219 CpG island CpG island 7372
Cpgi7373 15 80369366 to 80369694 328 CpG island CpG island 7373
Cpgi7374 15 80372145 to 80372702 557 CpG island CpG island 7374
Cpgi7375 15 80395046 to 80395572 526 CpG island CpG island 7375
Gm41363 15 80398386 to 80404234 5848 - lncRNA gene predicted gene, 41363
D15Mit95 15 80416786 to 80416914 128 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 95
Gm31369 15 80431571 to 80438603 7032 - lincRNA gene predicted gene, 31369
Enthd1 15 80452240 to 80565156 112916 - protein coding gene ENTH domain containing 1
Gm23220 15 80458038 to 80458174 136 - snoRNA gene predicted gene, 23220
D15Mit214 15 80466108 to 80466232 124 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 214
Gm19141 15 80475917 to 80477938 2021 + pseudogene predicted gene, 19141