Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:80079894-84060705

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886 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Msq1 15 63517797 to 81202235 17684438 QTL MAV-1 susceptibility QTL 1
Rpl3 15 80077781 to 80083406 5625 - protein coding gene ribosomal protein L3
Gm22077 15 80080251 to 80080343 92 - snoRNA gene predicted gene, 22077
Tssr135414 15 80081053 to 80081081 28 - TSS region transcription start site region 135414
Snord43 15 80082859 to 80082906 47 - snoRNA gene small nucleolar RNA, C/D box 43
Cpgi7361 15 80083054 to 80084021 967 CpG island CpG island 7361
Tssr135415 15 80083342 to 80083359 17 - TSS region transcription start site region 135415
Tssr135416 15 80083374 to 80083420 46 - TSS region transcription start site region 135416
Gm24204 15 80088447 to 80088553 106 - snRNA gene predicted gene, 24204
Tssr135417 15 80088897 to 80088903 6 - TSS region transcription start site region 135417
Gm31134 15 80090733 to 80093339 2606 - lncRNA gene predicted gene, 31134
Cpgi7362 15 80090769 to 80092194 1425 CpG island CpG island 7362
Tssr132156 15 80091198 to 80091207 9 + TSS region transcription start site region 132156
Tssr132157 15 80091320 to 80091390 70 + TSS region transcription start site region 132157
Syngr1 15 80091334 to 80119501 28167 + protein coding gene synaptogyrin 1
Tssr135418 15 80091822 to 80091840 18 - TSS region transcription start site region 135418
Cpgi7363 15 80096492 to 80096671 179 CpG island CpG island 7363
Tssr132158 15 80097866 to 80097873 7 + TSS region transcription start site region 132158
Tssr132159 15 80098180 to 80098203 23 + TSS region transcription start site region 132159
Tssr135419 15 80098927 to 80098934 7 - TSS region transcription start site region 135419
Tssr132160 15 80099151 to 80099163 12 + TSS region transcription start site region 132160
Tssr132161 15 80110445 to 80110485 40 + TSS region transcription start site region 132161
Tssr132162 15 80115442 to 80115488 46 + TSS region transcription start site region 132162
Cpgi7364 15 80115882 to 80116118 236 CpG island CpG island 7364
Tssr132163 15 80126553 to 80126559 6 + TSS region transcription start site region 132163
Gm31253 15 80129399 to 80134709 5310 - lncRNA gene predicted gene, 31253
Cpgi7365 15 80132993 to 80133956 963 CpG island CpG island 7365
Tssr132164 15 80133114 to 80133155 41 + TSS region transcription start site region 132164
Tab1 15 80133154 to 80161707 28553 + protein coding gene TGF-beta activated kinase 1/MAP3K7 binding protein 1
Tssr132165 15 80133511 to 80133527 16 + TSS region transcription start site region 132165
Tssr135420 15 80134037 to 80134060 23 - TSS region transcription start site region 135420
Tssr132166 15 80135237 to 80135241 4 + TSS region transcription start site region 132166
Tssr132167 15 80148709 to 80148724 15 + TSS region transcription start site region 132167
Tssr132168 15 80165673 to 80165684 11 + TSS region transcription start site region 132168
Tssr132169 15 80165767 to 80165771 4 + TSS region transcription start site region 132169
Tssr132170 15 80171587 to 80171611 24 + TSS region transcription start site region 132170
Tssr132171 15 80171895 to 80171912 17 + TSS region transcription start site region 132171
Cpgi7366 15 80172940 to 80174652 1712 CpG island CpG island 7366
Tssr132172 15 80173188 to 80173204 16 + TSS region transcription start site region 132172
Tssr132173 15 80173205 to 80173229 24 + TSS region transcription start site region 132173
Tssr132174 15 80173250 to 80173267 17 + TSS region transcription start site region 132174
Tssr132175 15 80173270 to 80173300 30 + TSS region transcription start site region 132175
Tssr132176 15 80173304 to 80173410 106 + TSS region transcription start site region 132176
Tssr132177 15 80173515 to 80173548 33 + TSS region transcription start site region 132177
Tssr132178 15 80173552 to 80173580 28 + TSS region transcription start site region 132178
Tssr132179 15 80173585 to 80173601 16 + TSS region transcription start site region 132179
Tssr132180 15 80173642 to 80173683 41 + TSS region transcription start site region 132180
Tssr132181 15 80173693 to 80173704 11 + TSS region transcription start site region 132181
Mgat3 15 80173721 to 80215519 41798 + protein coding gene mannoside acetylglucosaminyltransferase 3
Tssr132182 15 80173778 to 80173812 34 + TSS region transcription start site region 132182
Tssr132183 15 80189132 to 80189182 50 + TSS region transcription start site region 132183
Tssr132184 15 80189184 to 80189201 17 + TSS region transcription start site region 132184
Tssr132185 15 80191845 to 80191878 33 + TSS region transcription start site region 132185
Tssr132186 15 80192162 to 80192182 20 + TSS region transcription start site region 132186
Tssr132187 15 80193000 to 80193014 14 + TSS region transcription start site region 132187
Tssr132188 15 80193053 to 80193070 17 + TSS region transcription start site region 132188
Tssr132189 15 80193073 to 80193085 12 + TSS region transcription start site region 132189
Tssr4660 15 80193110 to 80193132 22 + TSS region transcription start site region 4660
Cpgi7367 15 80211158 to 80212320 1162 CpG island CpG island 7367
Tssr132190 15 80212112 to 80212137 25 + TSS region transcription start site region 132190
Tssr135421 15 80219293 to 80219332 39 - TSS region transcription start site region 135421
Tssr135422 15 80219374 to 80219389 15 - TSS region transcription start site region 135422
Tssr132191 15 80219578 to 80219602 24 + TSS region transcription start site region 132191
Tssr135423 15 80219854 to 80219862 8 - TSS region transcription start site region 135423
Tssr132192 15 80221890 to 80221895 5 + TSS region transcription start site region 132192
Gm46521 15 80226323 to 80231381 5058 + lncRNA gene predicted gene, 46521
4930588D02Rik 15 80227951 to 80228414 463 - unclassified gene RIKEN cDNA 4930588D02 gene
Tssr135424 15 80228408 to 80228419 11 - TSS region transcription start site region 135424
Tssr135425 15 80228428 to 80228440 12 - TSS region transcription start site region 135425
Gm8375 15 80229127 to 80229923 796 - pseudogene predicted gene 8375
Tssr135426 15 80229950 to 80229953 3 - TSS region transcription start site region 135426
Cpgi7368 15 80233752 to 80234582 830 CpG island CpG island 7368
Mief1 15 80234018 to 80253371 19353 + protein coding gene mitochondrial elongation factor 1
Tssr132193 15 80234047 to 80234064 17 + TSS region transcription start site region 132193
Tssr132194 15 80234071 to 80234146 75 + TSS region transcription start site region 132194
Tssr135427 15 80235315 to 80235328 13 - TSS region transcription start site region 135427
Tssr135428 15 80235377 to 80235392 15 - TSS region transcription start site region 135428
Tssr132195 15 80235495 to 80235517 22 + TSS region transcription start site region 132195
Tssr132196 15 80235573 to 80235594 21 + TSS region transcription start site region 132196
D15Mit261 15 80236267 to 80236391 124 DNA segment DNA Segment, Chr 15 Massachusetts Institute of Technology 261
Tssr135429 15 80239873 to 80239885 12 - TSS region transcription start site region 135429
Tssr135430 15 80239890 to 80239901 11 - TSS region transcription start site region 135430
Tssr132197 15 80242572 to 80242576 4 + TSS region transcription start site region 132197
Tssr132198 15 80250383 to 80250387 4 + TSS region transcription start site region 132198
Cpgi7369 15 80254826 to 80256353 1527 CpG island CpG island 7369
Tssr135431 15 80254963 to 80255000 37 - TSS region transcription start site region 135431
Tssr135432 15 80255006 to 80255018 12 - TSS region transcription start site region 135432
Tssr132199 15 80255170 to 80255181 11 + TSS region transcription start site region 132199
Atf4 15 80255184 to 80257541 2357 + protein coding gene activating transcription factor 4
Tssr132200 15 80255248 to 80255263 15 + TSS region transcription start site region 132200
Tssr132201 15 80255301 to 80255321 20 + TSS region transcription start site region 132201
Tssr132202 15 80255490 to 80255511 21 + TSS region transcription start site region 132202
Tssr135433 15 80255845 to 80255864 19 - TSS region transcription start site region 135433
Tssr132203 15 80256017 to 80256078 61 + TSS region transcription start site region 132203
Tssr132204 15 80256337 to 80256349 12 + TSS region transcription start site region 132204
Tssr132205 15 80256904 to 80256920 16 + TSS region transcription start site region 132205
Tssr132206 15 80257082 to 80257135 53 + TSS region transcription start site region 132206
Tssr132207 15 80257165 to 80257186 21 + TSS region transcription start site region 132207
Tssr135434 15 80257533 to 80257541 8 - TSS region transcription start site region 135434
Rps19bp1 15 80260614 to 80264306 3692 - protein coding gene ribosomal protein S19 binding protein 1
Cpgi7370 15 80263683 to 80264549 866 CpG island CpG island 7370
Tssr135435 15 80264276 to 80264322 46 - TSS region transcription start site region 135435
D15Mit2 15 80279702 to 80279794 92 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 2
Faq9 15 80279702 to 80279794 92 QTL fluctuating asymmetry QTL 9
Cpgi7371 15 80286715 to 80288417 1702 CpG island CpG island 7371
Tssr132208 15 80287234 to 80287252 18 + TSS region transcription start site region 132208
Cacna1i 15 80287238 to 80398279 111041 + protein coding gene calcium channel, voltage-dependent, alpha 1I subunit
Tssr132209 15 80287269 to 80287293 24 + TSS region transcription start site region 132209
Tssr132210 15 80287301 to 80287313 12 + TSS region transcription start site region 132210
Tssr132211 15 80287509 to 80287535 26 + TSS region transcription start site region 132211
Gm31319 15 80287868 to 80292521 4653 - lncRNA gene predicted gene, 31319
Tssr132212 15 80320153 to 80320166 13 + TSS region transcription start site region 132212
Tssr132213 15 80320181 to 80320203 22 + TSS region transcription start site region 132213
Tssr132214 15 80320257 to 80320304 47 + TSS region transcription start site region 132214
Cpgi7372 15 80358859 to 80359078 219 CpG island CpG island 7372
Cpgi7373 15 80369366 to 80369694 328 CpG island CpG island 7373
Cpgi7374 15 80372145 to 80372702 557 CpG island CpG island 7374
Cpgi7375 15 80395046 to 80395572 526 CpG island CpG island 7375
Gm41363 15 80398386 to 80404234 5848 - lncRNA gene predicted gene, 41363
D15Mit95 15 80416786 to 80416914 128 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 95
Gm31369 15 80431571 to 80438603 7032 - lincRNA gene predicted gene, 31369
Enthd1 15 80452240 to 80565156 112916 - protein coding gene ENTH domain containing 1
Gm23220 15 80458038 to 80458174 136 - snoRNA gene predicted gene, 23220
D15Mit214 15 80466108 to 80466232 124 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 214
Gm19141 15 80475917 to 80477938 2021 + pseudogene predicted gene, 19141
Tssr135436 15 80562497 to 80562507 10 - TSS region transcription start site region 135436
Tssr135437 15 80565123 to 80565128 5 - TSS region transcription start site region 135437
Tssr135438 15 80565134 to 80565147 13 - TSS region transcription start site region 135438
Tssr135439 15 80565150 to 80565167 17 - TSS region transcription start site region 135439
Tssr132215 15 80572424 to 80572435 11 + TSS region transcription start site region 132215
Tssr132216 15 80572455 to 80572460 5 + TSS region transcription start site region 132216
Tssr132217 15 80572469 to 80572480 11 + TSS region transcription start site region 132217
Tssr132218 15 80572494 to 80572499 5 + TSS region transcription start site region 132218
Tssr132219 15 80572537 to 80572560 23 + TSS region transcription start site region 132219
Tssr132220 15 80572576 to 80572601 25 + TSS region transcription start site region 132220
Grap2 15 80572597 to 80652854 80257 + protein coding gene GRB2-related adaptor protein 2
Tssr132221 15 80572606 to 80572617 11 + TSS region transcription start site region 132221
Tssr132222 15 80572674 to 80572681 7 + TSS region transcription start site region 132222
Tssr132223 15 80572682 to 80572692 10 + TSS region transcription start site region 132223
Tssr132224 15 80572712 to 80572713 1 + TSS region transcription start site region 132224
Tssr132225 15 80572801 to 80572825 24 + TSS region transcription start site region 132225
Tssr135440 15 80576617 to 80576624 7 - TSS region transcription start site region 135440
Tssr132226 15 80578367 to 80578391 24 + TSS region transcription start site region 132226
Tssr132227 15 80597720 to 80597765 45 + TSS region transcription start site region 132227
Tssr132228 15 80597865 to 80597875 10 + TSS region transcription start site region 132228
Tssr132229 15 80611753 to 80611767 14 + TSS region transcription start site region 132229
5830419E12Rik 15 80615947 to 80617979 2032 protein coding gene RIKEN cDNA 5830419E12 gene
Tssr132230 15 80623342 to 80623354 12 + TSS region transcription start site region 132230
Tssr132231 15 80623470 to 80623491 21 + TSS region transcription start site region 132231
Tssr132232 15 80623499 to 80623549 50 + TSS region transcription start site region 132232
Gm49553 15 80640458 to 80642408 1950 + unclassified gene predicted gene, 49553
Mir6957 15 80646073 to 80646136 63 + miRNA gene microRNA 6957
Tssr135441 15 80650052 to 80650060 8 - TSS region transcription start site region 135441
Cpgi7376 15 80671304 to 80672436 1132 CpG island CpG island 7376
Tssr132233 15 80671622 to 80671633 11 + TSS region transcription start site region 132233
Tssr132234 15 80671636 to 80671646 10 + TSS region transcription start site region 132234
Tssr132235 15 80671648 to 80671677 29 + TSS region transcription start site region 132235
Tssr132236 15 80671686 to 80671696 10 + TSS region transcription start site region 132236
Tssr132237 15 80671829 to 80671861 32 + TSS region transcription start site region 132237
Fam83f 15 80671847 to 80700425 28578 + protein coding gene family with sequence similarity 83, member F
A430088P11Rik 15 80691025 to 80697610 6585 - antisense lncRNA gene RIKEN cDNA A430088P11 gene
Tssr135442 15 80697601 to 80697616 15 - TSS region transcription start site region 135442
Tssr135443 15 80701567 to 80701579 12 - TSS region transcription start site region 135443
Cpgi7377 15 80710758 to 80712366 1608 CpG island CpG island 7377
Tssr132238 15 80711241 to 80711265 24 + TSS region transcription start site region 132238
Tssr132239 15 80711292 to 80711340 48 + TSS region transcription start site region 132239
Tnrc6b 15 80711313 to 80941085 229772 + protein coding gene trinucleotide repeat containing 6b
Tssr135444 15 80711994 to 80712005 11 - TSS region transcription start site region 135444
Gm49512 15 80712271 to 80713686 1415 + sense intronic lncRNA gene predicted gene, 49512
Tssr132240 15 80722518 to 80722522 4 + TSS region transcription start site region 132240
Tssr4661 15 80743020 to 80743027 7 - TSS region transcription start site region 4661
Tssr135445 15 80743653 to 80743673 20 - TSS region transcription start site region 135445
Tssr132241 15 80743793 to 80743838 45 + TSS region transcription start site region 132241
Tssr132242 15 80762424 to 80762457 33 + TSS region transcription start site region 132242
Tssr135446 15 80798452 to 80798465 13 - TSS region transcription start site region 135446
Tssr132243 15 80798586 to 80798608 22 + TSS region transcription start site region 132243
Tssr132244 15 80798627 to 80798652 25 + TSS region transcription start site region 132244
D15Mit31 15 80814519 to 80814706 187 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 31
D15Mit32 15 80814519 to 80814647 128 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 32
Tssr132245 15 80820403 to 80820415 12 + TSS region transcription start site region 132245
Tssr132246 15 80820422 to 80820434 12 + TSS region transcription start site region 132246
D230044B12Rik 15 80831579 to 80833212 1633 unclassified gene RIKEN cDNA D230044B12 gene
Cpgi7378 15 80876292 to 80876623 331 CpG island CpG island 7378
B130063F10Rik 15 80890293 to 80893149 2856 unclassified gene RIKEN cDNA B130063F10 gene
D15Mit69 15 80896284 to 80896417 133 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 69
Tssr135447 15 80896888 to 80896902 14 - TSS region transcription start site region 135447
Tssr132247 15 80897193 to 80897198 5 + TSS region transcription start site region 132247
Tssr132248 15 80902392 to 80902407 15 + TSS region transcription start site region 132248
Tssr132249 15 80930517 to 80930527 10 + TSS region transcription start site region 132249
Tssr132250 15 80930531 to 80930554 23 + TSS region transcription start site region 132250
Tssr132251 15 80931288 to 80931322 34 + TSS region transcription start site region 132251
Tssr132252 15 80937122 to 80937147 25 + TSS region transcription start site region 132252
Mir5113 15 80940039 to 80940120 81 + miRNA gene microRNA 5113
Cpgi7379 15 80948115 to 80948987 872 CpG island CpG island 7379
Tssr132253 15 80948484 to 80948549 65 + TSS region transcription start site region 132253
Adsl 15 80948490 to 80970946 22456 + protein coding gene adenylosuccinate lyase
Tssr132254 15 80952472 to 80952480 8 + TSS region transcription start site region 132254
Gm6612 15 80952505 to 80952899 394 + pseudogene predicted gene 6612
Cpgi7380 15 80977545 to 80978367 822 CpG island CpG island 7380
Tssr132255 15 80977608 to 80977619 11 + TSS region transcription start site region 132255