Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:79965733-80221139

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cocia2 15 72500610 to 80014977 7514367 QTL cocaine induced activation 2
Cbx7 15 79915807 to 79971119 55312 - protein coding gene chromobox 7
Tssr135407 15 79971121 to 79971129 8 - TSS region transcription start site region 135407
Pdgfb 15 79995874 to 80014977 19103 - protein coding gene platelet derived growth factor, B polypeptide
Vacq2 15 79995874 to 80014977 19103 QTL voluntary alcohol consumption QTL 2
Mir7213 15 79998970 to 79999026 56 - miRNA gene microRNA 7213
Cpgi7360 15 80011775 to 80015273 3498 CpG island CpG island 7360
Tssr132151 15 80012240 to 80012266 26 + TSS region transcription start site region 132151
Tssr132152 15 80012321 to 80012348 27 + TSS region transcription start site region 132152
Gm41361 15 80012331 to 80042457 30126 + antisense lncRNA gene predicted gene, 41361
Tssr135408 15 80013211 to 80013226 15 - TSS region transcription start site region 135408
Tssr135409 15 80013964 to 80013983 19 - TSS region transcription start site region 135409
Tssr135410 15 80013989 to 80014018 29 - TSS region transcription start site region 135410
Tssr135411 15 80014278 to 80014290 12 - TSS region transcription start site region 135411
Tssr135412 15 80014301 to 80014367 66 - TSS region transcription start site region 135412
Tssr135413 15 80014966 to 80014984 18 - TSS region transcription start site region 135413
Tssr132153 15 80024485 to 80024490 5 + TSS region transcription start site region 132153
Tssr132154 15 80042423 to 80042449 26 + TSS region transcription start site region 132154
F830031D20Rik 15 80048255 to 80050093 1838 unclassified gene RIKEN cDNA F830031D20 gene
Gm41362 15 80053218 to 80059754 6536 - lncRNA gene predicted gene, 41362
Tssr132155 15 80059570 to 80059571 1 + TSS region transcription start site region 132155
Rpl3 15 80077781 to 80083406 5625 - protein coding gene ribosomal protein L3
Snord83b 15 80078503 to 80078579 76 - snoRNA gene small nucleolar RNA, C/D box 83B
Gm22077 15 80080251 to 80080343 92 - snoRNA gene predicted gene, 22077
Tssr135414 15 80081053 to 80081081 28 - TSS region transcription start site region 135414
Snord43 15 80082859 to 80082906 47 - snoRNA gene small nucleolar RNA, C/D box 43
Cpgi7361 15 80083054 to 80084021 967 CpG island CpG island 7361
Tssr135415 15 80083342 to 80083359 17 - TSS region transcription start site region 135415
Tssr135416 15 80083374 to 80083420 46 - TSS region transcription start site region 135416
Gm24204 15 80088447 to 80088553 106 - snRNA gene predicted gene, 24204
Tssr135417 15 80088897 to 80088903 6 - TSS region transcription start site region 135417
Gm31134 15 80090733 to 80093339 2606 - lncRNA gene predicted gene, 31134
Cpgi7362 15 80090769 to 80092194 1425 CpG island CpG island 7362
Tssr132156 15 80091198 to 80091207 9 + TSS region transcription start site region 132156
Tssr132157 15 80091320 to 80091390 70 + TSS region transcription start site region 132157
Syngr1 15 80091334 to 80119501 28167 + protein coding gene synaptogyrin 1
Tssr135418 15 80091822 to 80091840 18 - TSS region transcription start site region 135418
Cpgi7363 15 80096492 to 80096671 179 CpG island CpG island 7363
Tssr132158 15 80097866 to 80097873 7 + TSS region transcription start site region 132158
Tssr132159 15 80098180 to 80098203 23 + TSS region transcription start site region 132159
Tssr135419 15 80098927 to 80098934 7 - TSS region transcription start site region 135419
Tssr132160 15 80099151 to 80099163 12 + TSS region transcription start site region 132160
Tssr132161 15 80110445 to 80110485 40 + TSS region transcription start site region 132161
Tssr132162 15 80115442 to 80115488 46 + TSS region transcription start site region 132162
Cpgi7364 15 80115882 to 80116118 236 CpG island CpG island 7364
Tssr132163 15 80126553 to 80126559 6 + TSS region transcription start site region 132163
Gm31253 15 80129399 to 80134709 5310 - lncRNA gene predicted gene, 31253
Cpgi7365 15 80132993 to 80133956 963 CpG island CpG island 7365
Tssr132164 15 80133114 to 80133155 41 + TSS region transcription start site region 132164
Tab1 15 80133154 to 80161707 28553 + protein coding gene TGF-beta activated kinase 1/MAP3K7 binding protein 1
Tssr132165 15 80133511 to 80133527 16 + TSS region transcription start site region 132165
Tssr135420 15 80134037 to 80134060 23 - TSS region transcription start site region 135420
Tssr132166 15 80135237 to 80135241 4 + TSS region transcription start site region 132166
Tssr132167 15 80148709 to 80148724 15 + TSS region transcription start site region 132167
Tssr132168 15 80165673 to 80165684 11 + TSS region transcription start site region 132168
Tssr132169 15 80165767 to 80165771 4 + TSS region transcription start site region 132169
Tssr132170 15 80171587 to 80171611 24 + TSS region transcription start site region 132170
Tssr132171 15 80171895 to 80171912 17 + TSS region transcription start site region 132171
Cpgi7366 15 80172940 to 80174652 1712 CpG island CpG island 7366
Tssr132172 15 80173188 to 80173204 16 + TSS region transcription start site region 132172
Tssr132173 15 80173205 to 80173229 24 + TSS region transcription start site region 132173
Tssr132174 15 80173250 to 80173267 17 + TSS region transcription start site region 132174
Tssr132175 15 80173270 to 80173300 30 + TSS region transcription start site region 132175
Tssr132176 15 80173304 to 80173410 106 + TSS region transcription start site region 132176
Tssr132177 15 80173515 to 80173548 33 + TSS region transcription start site region 132177
Tssr132178 15 80173552 to 80173580 28 + TSS region transcription start site region 132178
Tssr132179 15 80173585 to 80173601 16 + TSS region transcription start site region 132179
Tssr132180 15 80173642 to 80173683 41 + TSS region transcription start site region 132180
Tssr132181 15 80173693 to 80173704 11 + TSS region transcription start site region 132181
Mgat3 15 80173721 to 80215519 41798 + protein coding gene mannoside acetylglucosaminyltransferase 3
Tssr132182 15 80173778 to 80173812 34 + TSS region transcription start site region 132182
Tssr132183 15 80189132 to 80189182 50 + TSS region transcription start site region 132183
Tssr132184 15 80189184 to 80189201 17 + TSS region transcription start site region 132184
Tssr132185 15 80191845 to 80191878 33 + TSS region transcription start site region 132185
Tssr132186 15 80192162 to 80192182 20 + TSS region transcription start site region 132186
Tssr132187 15 80193000 to 80193014 14 + TSS region transcription start site region 132187
Tssr132188 15 80193053 to 80193070 17 + TSS region transcription start site region 132188
Tssr132189 15 80193073 to 80193085 12 + TSS region transcription start site region 132189
Tssr4660 15 80193110 to 80193132 22 + TSS region transcription start site region 4660
Cpgi7367 15 80211158 to 80212320 1162 CpG island CpG island 7367
Tssr132190 15 80212112 to 80212137 25 + TSS region transcription start site region 132190
Tssr135421 15 80219293 to 80219332 39 - TSS region transcription start site region 135421
Tssr135422 15 80219374 to 80219389 15 - TSS region transcription start site region 135422
Tssr132191 15 80219578 to 80219602 24 + TSS region transcription start site region 132191
Tssr135423 15 80219854 to 80219862 8 - TSS region transcription start site region 135423