Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:79909047-80559064

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167 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cocia2 15 72500610 to 80014977 7514367 QTL cocaine induced activation 2
Apobec3 15 79891659 to 79915906 24247 + protein coding gene apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3
Tssr132144 15 79911081 to 79911086 5 + TSS region transcription start site region 132144
Tssr132145 15 79913007 to 79913013 6 + TSS region transcription start site region 132145
Cbx7 15 79915807 to 79971119 55312 - protein coding gene chromobox 7
Cpgi7355 15 79918174 to 79919064 890 CpG island CpG island 7355
Cpgi7356 15 79927631 to 79928054 423 CpG island CpG island 7356
Tssr132146 15 79927839 to 79927894 55 + TSS region transcription start site region 132146
Tssr132147 15 79928147 to 79928159 12 + TSS region transcription start site region 132147
Tssr135400 15 79931695 to 79931736 41 - TSS region transcription start site region 135400
Cpgi7357 15 79932133 to 79933045 912 CpG island CpG island 7357
Tssr135401 15 79932511 to 79932546 35 - TSS region transcription start site region 135401
Tssr135402 15 79932584 to 79932665 81 - TSS region transcription start site region 135402
Tssr135403 15 79932716 to 79932782 66 - TSS region transcription start site region 135403
Tssr132148 15 79932884 to 79932897 13 + TSS region transcription start site region 132148
Cpgi7358 15 79933423 to 79933801 378 CpG island CpG island 7358
Tssr132149 15 79933954 to 79934002 48 + TSS region transcription start site region 132149
Tssr135404 15 79934407 to 79934414 7 - TSS region transcription start site region 135404
Tssr4659 15 79935620 to 79935623 3 + TSS region transcription start site region 4659
Tssr132150 15 79935957 to 79935972 15 + TSS region transcription start site region 132150
Tssr135405 15 79958391 to 79958406 15 - TSS region transcription start site region 135405
Tssr135406 15 79958409 to 79958426 17 - TSS region transcription start site region 135406
Cpgi7359 15 79962671 to 79962942 271 CpG island CpG island 7359
Tssr135407 15 79971121 to 79971129 8 - TSS region transcription start site region 135407
Vacq2 15 79995874 to 80014977 19103 QTL voluntary alcohol consumption QTL 2
Pdgfb 15 79995874 to 80014977 19103 - protein coding gene platelet derived growth factor, B polypeptide
Mir7213 15 79998970 to 79999026 56 - miRNA gene microRNA 7213
Cpgi7360 15 80011775 to 80015273 3498 CpG island CpG island 7360
Tssr132151 15 80012240 to 80012266 26 + TSS region transcription start site region 132151
Tssr132152 15 80012321 to 80012348 27 + TSS region transcription start site region 132152
Gm41361 15 80012331 to 80042457 30126 + antisense lncRNA gene predicted gene, 41361
Tssr135408 15 80013211 to 80013226 15 - TSS region transcription start site region 135408
Tssr135409 15 80013964 to 80013983 19 - TSS region transcription start site region 135409
Tssr135410 15 80013989 to 80014018 29 - TSS region transcription start site region 135410
Tssr135411 15 80014278 to 80014290 12 - TSS region transcription start site region 135411
Tssr135412 15 80014301 to 80014367 66 - TSS region transcription start site region 135412
Tssr135413 15 80014966 to 80014984 18 - TSS region transcription start site region 135413
Tssr132153 15 80024485 to 80024490 5 + TSS region transcription start site region 132153
Tssr132154 15 80042423 to 80042449 26 + TSS region transcription start site region 132154
F830031D20Rik 15 80048255 to 80050093 1838 unclassified gene RIKEN cDNA F830031D20 gene
Gm41362 15 80053218 to 80059754 6536 - lncRNA gene predicted gene, 41362
Tssr132155 15 80059570 to 80059571 1 + TSS region transcription start site region 132155
Rpl3 15 80077781 to 80083406 5625 - protein coding gene ribosomal protein L3
Snord83b 15 80078503 to 80078579 76 - snoRNA gene small nucleolar RNA, C/D box 83B
Gm22077 15 80080251 to 80080343 92 - snoRNA gene predicted gene, 22077
Tssr135414 15 80081053 to 80081081 28 - TSS region transcription start site region 135414
Snord43 15 80082859 to 80082906 47 - snoRNA gene small nucleolar RNA, C/D box 43
Cpgi7361 15 80083054 to 80084021 967 CpG island CpG island 7361
Tssr135415 15 80083342 to 80083359 17 - TSS region transcription start site region 135415
Tssr135416 15 80083374 to 80083420 46 - TSS region transcription start site region 135416
Gm24204 15 80088447 to 80088553 106 - snRNA gene predicted gene, 24204
Tssr135417 15 80088897 to 80088903 6 - TSS region transcription start site region 135417
Gm31134 15 80090733 to 80093339 2606 - lncRNA gene predicted gene, 31134
Cpgi7362 15 80090769 to 80092194 1425 CpG island CpG island 7362
Tssr132156 15 80091198 to 80091207 9 + TSS region transcription start site region 132156
Tssr132157 15 80091320 to 80091390 70 + TSS region transcription start site region 132157
Syngr1 15 80091334 to 80119501 28167 + protein coding gene synaptogyrin 1
Tssr135418 15 80091822 to 80091840 18 - TSS region transcription start site region 135418
Cpgi7363 15 80096492 to 80096671 179 CpG island CpG island 7363
Tssr132158 15 80097866 to 80097873 7 + TSS region transcription start site region 132158
Tssr132159 15 80098180 to 80098203 23 + TSS region transcription start site region 132159
Tssr135419 15 80098927 to 80098934 7 - TSS region transcription start site region 135419
Tssr132160 15 80099151 to 80099163 12 + TSS region transcription start site region 132160
Tssr132161 15 80110445 to 80110485 40 + TSS region transcription start site region 132161
Tssr132162 15 80115442 to 80115488 46 + TSS region transcription start site region 132162
Cpgi7364 15 80115882 to 80116118 236 CpG island CpG island 7364
Tssr132163 15 80126553 to 80126559 6 + TSS region transcription start site region 132163
Gm31253 15 80129399 to 80134709 5310 - lncRNA gene predicted gene, 31253
Cpgi7365 15 80132993 to 80133956 963 CpG island CpG island 7365
Tssr132164 15 80133114 to 80133155 41 + TSS region transcription start site region 132164
Tab1 15 80133154 to 80161707 28553 + protein coding gene TGF-beta activated kinase 1/MAP3K7 binding protein 1
Tssr132165 15 80133511 to 80133527 16 + TSS region transcription start site region 132165
Tssr135420 15 80134037 to 80134060 23 - TSS region transcription start site region 135420
Tssr132166 15 80135237 to 80135241 4 + TSS region transcription start site region 132166
Tssr132167 15 80148709 to 80148724 15 + TSS region transcription start site region 132167
Tssr132168 15 80165673 to 80165684 11 + TSS region transcription start site region 132168
Tssr132169 15 80165767 to 80165771 4 + TSS region transcription start site region 132169
Tssr132170 15 80171587 to 80171611 24 + TSS region transcription start site region 132170
Tssr132171 15 80171895 to 80171912 17 + TSS region transcription start site region 132171
Cpgi7366 15 80172940 to 80174652 1712 CpG island CpG island 7366
Tssr132172 15 80173188 to 80173204 16 + TSS region transcription start site region 132172
Tssr132173 15 80173205 to 80173229 24 + TSS region transcription start site region 132173
Tssr132174 15 80173250 to 80173267 17 + TSS region transcription start site region 132174
Tssr132175 15 80173270 to 80173300 30 + TSS region transcription start site region 132175
Tssr132176 15 80173304 to 80173410 106 + TSS region transcription start site region 132176
Tssr132177 15 80173515 to 80173548 33 + TSS region transcription start site region 132177
Tssr132178 15 80173552 to 80173580 28 + TSS region transcription start site region 132178
Tssr132179 15 80173585 to 80173601 16 + TSS region transcription start site region 132179
Tssr132180 15 80173642 to 80173683 41 + TSS region transcription start site region 132180
Tssr132181 15 80173693 to 80173704 11 + TSS region transcription start site region 132181
Mgat3 15 80173721 to 80215519 41798 + protein coding gene mannoside acetylglucosaminyltransferase 3
Tssr132182 15 80173778 to 80173812 34 + TSS region transcription start site region 132182
Tssr132183 15 80189132 to 80189182 50 + TSS region transcription start site region 132183
Tssr132184 15 80189184 to 80189201 17 + TSS region transcription start site region 132184
Tssr132185 15 80191845 to 80191878 33 + TSS region transcription start site region 132185
Tssr132186 15 80192162 to 80192182 20 + TSS region transcription start site region 132186
Tssr132187 15 80193000 to 80193014 14 + TSS region transcription start site region 132187
Tssr132188 15 80193053 to 80193070 17 + TSS region transcription start site region 132188
Tssr132189 15 80193073 to 80193085 12 + TSS region transcription start site region 132189
Tssr4660 15 80193110 to 80193132 22 + TSS region transcription start site region 4660
Cpgi7367 15 80211158 to 80212320 1162 CpG island CpG island 7367
Tssr132190 15 80212112 to 80212137 25 + TSS region transcription start site region 132190
Tssr135421 15 80219293 to 80219332 39 - TSS region transcription start site region 135421
Tssr135422 15 80219374 to 80219389 15 - TSS region transcription start site region 135422
Tssr132191 15 80219578 to 80219602 24 + TSS region transcription start site region 132191
Tssr135423 15 80219854 to 80219862 8 - TSS region transcription start site region 135423
Tssr132192 15 80221890 to 80221895 5 + TSS region transcription start site region 132192
Gm46521 15 80226323 to 80231381 5058 + lncRNA gene predicted gene, 46521
4930588D02Rik 15 80227951 to 80228414 463 - unclassified gene RIKEN cDNA 4930588D02 gene
Tssr135424 15 80228408 to 80228419 11 - TSS region transcription start site region 135424
Tssr135425 15 80228428 to 80228440 12 - TSS region transcription start site region 135425
Gm8375 15 80229127 to 80229923 796 - pseudogene predicted gene 8375
Tssr135426 15 80229950 to 80229953 3 - TSS region transcription start site region 135426
Cpgi7368 15 80233752 to 80234582 830 CpG island CpG island 7368
Mief1 15 80234018 to 80253371 19353 + protein coding gene mitochondrial elongation factor 1
Tssr132193 15 80234047 to 80234064 17 + TSS region transcription start site region 132193
Tssr132194 15 80234071 to 80234146 75 + TSS region transcription start site region 132194
Tssr135427 15 80235315 to 80235328 13 - TSS region transcription start site region 135427
Tssr135428 15 80235377 to 80235392 15 - TSS region transcription start site region 135428
Tssr132195 15 80235495 to 80235517 22 + TSS region transcription start site region 132195
Tssr132196 15 80235573 to 80235594 21 + TSS region transcription start site region 132196
D15Mit261 15 80236267 to 80236391 124 DNA segment DNA Segment, Chr 15 Massachusetts Institute of Technology 261
Tssr135429 15 80239873 to 80239885 12 - TSS region transcription start site region 135429
Tssr135430 15 80239890 to 80239901 11 - TSS region transcription start site region 135430
Tssr132197 15 80242572 to 80242576 4 + TSS region transcription start site region 132197
Tssr132198 15 80250383 to 80250387 4 + TSS region transcription start site region 132198
Cpgi7369 15 80254826 to 80256353 1527 CpG island CpG island 7369
Tssr135431 15 80254963 to 80255000 37 - TSS region transcription start site region 135431
Tssr135432 15 80255006 to 80255018 12 - TSS region transcription start site region 135432
Tssr132199 15 80255170 to 80255181 11 + TSS region transcription start site region 132199
Atf4 15 80255184 to 80257541 2357 + protein coding gene activating transcription factor 4
Tssr132200 15 80255248 to 80255263 15 + TSS region transcription start site region 132200
Tssr132201 15 80255301 to 80255321 20 + TSS region transcription start site region 132201
Tssr132202 15 80255490 to 80255511 21 + TSS region transcription start site region 132202
Tssr135433 15 80255845 to 80255864 19 - TSS region transcription start site region 135433
Tssr132203 15 80256017 to 80256078 61 + TSS region transcription start site region 132203
Tssr132204 15 80256337 to 80256349 12 + TSS region transcription start site region 132204
Tssr132205 15 80256904 to 80256920 16 + TSS region transcription start site region 132205
Tssr132206 15 80257082 to 80257135 53 + TSS region transcription start site region 132206
Tssr132207 15 80257165 to 80257186 21 + TSS region transcription start site region 132207
Tssr135434 15 80257533 to 80257541 8 - TSS region transcription start site region 135434
Rps19bp1 15 80260614 to 80264306 3692 - protein coding gene ribosomal protein S19 binding protein 1
Cpgi7370 15 80263683 to 80264549 866 CpG island CpG island 7370
Tssr135435 15 80264276 to 80264322 46 - TSS region transcription start site region 135435
D15Mit2 15 80279702 to 80279794 92 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 2
Faq9 15 80279702 to 80279794 92 QTL fluctuating asymmetry QTL 9
Cpgi7371 15 80286715 to 80288417 1702 CpG island CpG island 7371
Tssr132208 15 80287234 to 80287252 18 + TSS region transcription start site region 132208
Cacna1i 15 80287238 to 80398279 111041 + protein coding gene calcium channel, voltage-dependent, alpha 1I subunit
Tssr132209 15 80287269 to 80287293 24 + TSS region transcription start site region 132209
Tssr132210 15 80287301 to 80287313 12 + TSS region transcription start site region 132210
Tssr132211 15 80287509 to 80287535 26 + TSS region transcription start site region 132211
Gm31319 15 80287868 to 80292521 4653 - lncRNA gene predicted gene, 31319
Tssr132212 15 80320153 to 80320166 13 + TSS region transcription start site region 132212
Tssr132213 15 80320181 to 80320203 22 + TSS region transcription start site region 132213
Tssr132214 15 80320257 to 80320304 47 + TSS region transcription start site region 132214
Cpgi7372 15 80358859 to 80359078 219 CpG island CpG island 7372
Cpgi7373 15 80369366 to 80369694 328 CpG island CpG island 7373
Cpgi7374 15 80372145 to 80372702 557 CpG island CpG island 7374
Cpgi7375 15 80395046 to 80395572 526 CpG island CpG island 7375
Gm41363 15 80398386 to 80404234 5848 - lncRNA gene predicted gene, 41363
D15Mit95 15 80416786 to 80416914 128 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 95
Gm31369 15 80431571 to 80438603 7032 - lincRNA gene predicted gene, 31369
Enthd1 15 80452240 to 80565156 112916 - protein coding gene ENTH domain containing 1
Gm23220 15 80458038 to 80458174 136 - snoRNA gene predicted gene, 23220
D15Mit214 15 80466108 to 80466232 124 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 214
Gm19141 15 80475917 to 80477938 2021 + pseudogene predicted gene, 19141