Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:79846053-80316081

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187 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cocia2 15 72500610 to 80014977 7514367 QTL cocaine induced activation 2
Gm10856 15 79843163 to 79846763 3600 + lincRNA gene predicted gene 10856
Gm49412 15 79873869 to 79877223 3354 + unclassified gene predicted gene, 49412
Tssr132119 15 79878965 to 79878990 25 + TSS region transcription start site region 132119
Cpgi7353 15 79883249 to 79883849 600 CpG island CpG island 7353
Tssr132120 15 79883507 to 79883527 20 + TSS region transcription start site region 132120
D730005E14Rik 15 79889532 to 79893138 3606 - lncRNA gene RIKEN cDNA D730005E14 gene
Tssr132121 15 79891631 to 79891662 31 + TSS region transcription start site region 132121
Apobec3 15 79891659 to 79915906 24247 + protein coding gene apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3
Tssr132122 15 79891693 to 79891704 11 + TSS region transcription start site region 132122
Tssr135396 15 79892315 to 79892349 34 - TSS region transcription start site region 135396
Tssr135397 15 79892353 to 79892364 11 - TSS region transcription start site region 135397
Tssr132123 15 79892379 to 79892390 11 + TSS region transcription start site region 132123
Tssr132124 15 79892397 to 79892435 38 + TSS region transcription start site region 132124
Cpgi7354 15 79892419 to 79892622 203 CpG island CpG island 7354
Tssr132125 15 79892436 to 79892482 46 + TSS region transcription start site region 132125
Tssr135398 15 79893052 to 79893063 11 - TSS region transcription start site region 135398
Tssr135399 15 79893117 to 79893137 20 - TSS region transcription start site region 135399
Tssr132126 15 79894986 to 79895015 29 + TSS region transcription start site region 132126
Tssr132127 15 79895017 to 79895036 19 + TSS region transcription start site region 132127
Tssr132128 15 79895091 to 79895104 13 + TSS region transcription start site region 132128
Tssr132129 15 79896696 to 79896719 23 + TSS region transcription start site region 132129
Tssr132130 15 79897706 to 79897757 51 + TSS region transcription start site region 132130
Tssr132131 15 79898347 to 79898350 3 + TSS region transcription start site region 132131
Tssr132132 15 79900240 to 79900249 9 + TSS region transcription start site region 132132
Tssr132133 15 79900271 to 79900288 17 + TSS region transcription start site region 132133
Tssr132134 15 79900295 to 79900311 16 + TSS region transcription start site region 132134
Tssr132135 15 79900317 to 79900334 17 + TSS region transcription start site region 132135
Tssr132136 15 79900345 to 79900363 18 + TSS region transcription start site region 132136
Tssr132137 15 79900375 to 79900385 10 + TSS region transcription start site region 132137
Tssr132138 15 79901187 to 79901198 11 + TSS region transcription start site region 132138
Tssr132139 15 79905462 to 79905520 58 + TSS region transcription start site region 132139
Tssr132140 15 79905840 to 79905846 6 + TSS region transcription start site region 132140
Tssr132141 15 79906544 to 79906556 12 + TSS region transcription start site region 132141
Tssr132142 15 79907389 to 79907422 33 + TSS region transcription start site region 132142
Tssr132143 15 79907633 to 79907652 19 + TSS region transcription start site region 132143
Tssr132144 15 79911081 to 79911086 5 + TSS region transcription start site region 132144
Tssr132145 15 79913007 to 79913013 6 + TSS region transcription start site region 132145
Cbx7 15 79915807 to 79971119 55312 - protein coding gene chromobox 7
Cpgi7355 15 79918174 to 79919064 890 CpG island CpG island 7355
Cpgi7356 15 79927631 to 79928054 423 CpG island CpG island 7356
Tssr132146 15 79927839 to 79927894 55 + TSS region transcription start site region 132146
Tssr132147 15 79928147 to 79928159 12 + TSS region transcription start site region 132147
Tssr135400 15 79931695 to 79931736 41 - TSS region transcription start site region 135400
Cpgi7357 15 79932133 to 79933045 912 CpG island CpG island 7357
Tssr135401 15 79932511 to 79932546 35 - TSS region transcription start site region 135401
Tssr135402 15 79932584 to 79932665 81 - TSS region transcription start site region 135402
Tssr135403 15 79932716 to 79932782 66 - TSS region transcription start site region 135403
Tssr132148 15 79932884 to 79932897 13 + TSS region transcription start site region 132148
Cpgi7358 15 79933423 to 79933801 378 CpG island CpG island 7358
Tssr132149 15 79933954 to 79934002 48 + TSS region transcription start site region 132149
Tssr135404 15 79934407 to 79934414 7 - TSS region transcription start site region 135404
Tssr4659 15 79935620 to 79935623 3 + TSS region transcription start site region 4659
Tssr132150 15 79935957 to 79935972 15 + TSS region transcription start site region 132150
Tssr135405 15 79958391 to 79958406 15 - TSS region transcription start site region 135405
Tssr135406 15 79958409 to 79958426 17 - TSS region transcription start site region 135406
Cpgi7359 15 79962671 to 79962942 271 CpG island CpG island 7359
Tssr135407 15 79971121 to 79971129 8 - TSS region transcription start site region 135407
Vacq2 15 79995874 to 80014977 19103 QTL voluntary alcohol consumption QTL 2
Pdgfb 15 79995874 to 80014977 19103 - protein coding gene platelet derived growth factor, B polypeptide
Mir7213 15 79998970 to 79999026 56 - miRNA gene microRNA 7213
Cpgi7360 15 80011775 to 80015273 3498 CpG island CpG island 7360
Tssr132151 15 80012240 to 80012266 26 + TSS region transcription start site region 132151
Tssr132152 15 80012321 to 80012348 27 + TSS region transcription start site region 132152
Gm41361 15 80012331 to 80042457 30126 + antisense lncRNA gene predicted gene, 41361
Tssr135408 15 80013211 to 80013226 15 - TSS region transcription start site region 135408
Tssr135409 15 80013964 to 80013983 19 - TSS region transcription start site region 135409
Tssr135410 15 80013989 to 80014018 29 - TSS region transcription start site region 135410
Tssr135411 15 80014278 to 80014290 12 - TSS region transcription start site region 135411
Tssr135412 15 80014301 to 80014367 66 - TSS region transcription start site region 135412
Tssr135413 15 80014966 to 80014984 18 - TSS region transcription start site region 135413
Tssr132153 15 80024485 to 80024490 5 + TSS region transcription start site region 132153
Tssr132154 15 80042423 to 80042449 26 + TSS region transcription start site region 132154
F830031D20Rik 15 80048255 to 80050093 1838 unclassified gene RIKEN cDNA F830031D20 gene
Gm41362 15 80053218 to 80059754 6536 - lncRNA gene predicted gene, 41362
Tssr132155 15 80059570 to 80059571 1 + TSS region transcription start site region 132155
Rpl3 15 80077781 to 80083406 5625 - protein coding gene ribosomal protein L3
Snord83b 15 80078503 to 80078579 76 - snoRNA gene small nucleolar RNA, C/D box 83B
Gm22077 15 80080251 to 80080343 92 - snoRNA gene predicted gene, 22077
Tssr135414 15 80081053 to 80081081 28 - TSS region transcription start site region 135414
Snord43 15 80082859 to 80082906 47 - snoRNA gene small nucleolar RNA, C/D box 43
Cpgi7361 15 80083054 to 80084021 967 CpG island CpG island 7361
Tssr135415 15 80083342 to 80083359 17 - TSS region transcription start site region 135415
Tssr135416 15 80083374 to 80083420 46 - TSS region transcription start site region 135416
Gm24204 15 80088447 to 80088553 106 - snRNA gene predicted gene, 24204
Tssr135417 15 80088897 to 80088903 6 - TSS region transcription start site region 135417
Gm31134 15 80090733 to 80093339 2606 - lncRNA gene predicted gene, 31134
Cpgi7362 15 80090769 to 80092194 1425 CpG island CpG island 7362
Tssr132156 15 80091198 to 80091207 9 + TSS region transcription start site region 132156
Tssr132157 15 80091320 to 80091390 70 + TSS region transcription start site region 132157
Syngr1 15 80091334 to 80119501 28167 + protein coding gene synaptogyrin 1
Tssr135418 15 80091822 to 80091840 18 - TSS region transcription start site region 135418
Cpgi7363 15 80096492 to 80096671 179 CpG island CpG island 7363
Tssr132158 15 80097866 to 80097873 7 + TSS region transcription start site region 132158
Tssr132159 15 80098180 to 80098203 23 + TSS region transcription start site region 132159
Tssr135419 15 80098927 to 80098934 7 - TSS region transcription start site region 135419
Tssr132160 15 80099151 to 80099163 12 + TSS region transcription start site region 132160
Tssr132161 15 80110445 to 80110485 40 + TSS region transcription start site region 132161
Tssr132162 15 80115442 to 80115488 46 + TSS region transcription start site region 132162
Cpgi7364 15 80115882 to 80116118 236 CpG island CpG island 7364
Tssr132163 15 80126553 to 80126559 6 + TSS region transcription start site region 132163
Gm31253 15 80129399 to 80134709 5310 - lncRNA gene predicted gene, 31253
Cpgi7365 15 80132993 to 80133956 963 CpG island CpG island 7365
Tssr132164 15 80133114 to 80133155 41 + TSS region transcription start site region 132164
Tab1 15 80133154 to 80161707 28553 + protein coding gene TGF-beta activated kinase 1/MAP3K7 binding protein 1
Tssr132165 15 80133511 to 80133527 16 + TSS region transcription start site region 132165
Tssr135420 15 80134037 to 80134060 23 - TSS region transcription start site region 135420
Tssr132166 15 80135237 to 80135241 4 + TSS region transcription start site region 132166
Tssr132167 15 80148709 to 80148724 15 + TSS region transcription start site region 132167
Tssr132168 15 80165673 to 80165684 11 + TSS region transcription start site region 132168
Tssr132169 15 80165767 to 80165771 4 + TSS region transcription start site region 132169
Tssr132170 15 80171587 to 80171611 24 + TSS region transcription start site region 132170
Tssr132171 15 80171895 to 80171912 17 + TSS region transcription start site region 132171
Cpgi7366 15 80172940 to 80174652 1712 CpG island CpG island 7366
Tssr132172 15 80173188 to 80173204 16 + TSS region transcription start site region 132172
Tssr132173 15 80173205 to 80173229 24 + TSS region transcription start site region 132173
Tssr132174 15 80173250 to 80173267 17 + TSS region transcription start site region 132174
Tssr132175 15 80173270 to 80173300 30 + TSS region transcription start site region 132175
Tssr132176 15 80173304 to 80173410 106 + TSS region transcription start site region 132176
Tssr132177 15 80173515 to 80173548 33 + TSS region transcription start site region 132177
Tssr132178 15 80173552 to 80173580 28 + TSS region transcription start site region 132178
Tssr132179 15 80173585 to 80173601 16 + TSS region transcription start site region 132179
Tssr132180 15 80173642 to 80173683 41 + TSS region transcription start site region 132180
Tssr132181 15 80173693 to 80173704 11 + TSS region transcription start site region 132181
Mgat3 15 80173721 to 80215519 41798 + protein coding gene mannoside acetylglucosaminyltransferase 3
Tssr132182 15 80173778 to 80173812 34 + TSS region transcription start site region 132182
Tssr132183 15 80189132 to 80189182 50 + TSS region transcription start site region 132183
Tssr132184 15 80189184 to 80189201 17 + TSS region transcription start site region 132184
Tssr132185 15 80191845 to 80191878 33 + TSS region transcription start site region 132185
Tssr132186 15 80192162 to 80192182 20 + TSS region transcription start site region 132186
Tssr132187 15 80193000 to 80193014 14 + TSS region transcription start site region 132187
Tssr132188 15 80193053 to 80193070 17 + TSS region transcription start site region 132188
Tssr132189 15 80193073 to 80193085 12 + TSS region transcription start site region 132189
Tssr4660 15 80193110 to 80193132 22 + TSS region transcription start site region 4660
Cpgi7367 15 80211158 to 80212320 1162 CpG island CpG island 7367
Tssr132190 15 80212112 to 80212137 25 + TSS region transcription start site region 132190
Tssr135421 15 80219293 to 80219332 39 - TSS region transcription start site region 135421
Tssr135422 15 80219374 to 80219389 15 - TSS region transcription start site region 135422
Tssr132191 15 80219578 to 80219602 24 + TSS region transcription start site region 132191
Tssr135423 15 80219854 to 80219862 8 - TSS region transcription start site region 135423
Tssr132192 15 80221890 to 80221895 5 + TSS region transcription start site region 132192
Gm46521 15 80226323 to 80231381 5058 + lncRNA gene predicted gene, 46521
4930588D02Rik 15 80227951 to 80228414 463 - unclassified gene RIKEN cDNA 4930588D02 gene
Tssr135424 15 80228408 to 80228419 11 - TSS region transcription start site region 135424
Tssr135425 15 80228428 to 80228440 12 - TSS region transcription start site region 135425
Gm8375 15 80229127 to 80229923 796 - pseudogene predicted gene 8375
Tssr135426 15 80229950 to 80229953 3 - TSS region transcription start site region 135426
Cpgi7368 15 80233752 to 80234582 830 CpG island CpG island 7368
Mief1 15 80234018 to 80253371 19353 + protein coding gene mitochondrial elongation factor 1
Tssr132193 15 80234047 to 80234064 17 + TSS region transcription start site region 132193
Tssr132194 15 80234071 to 80234146 75 + TSS region transcription start site region 132194
Tssr135427 15 80235315 to 80235328 13 - TSS region transcription start site region 135427
Tssr135428 15 80235377 to 80235392 15 - TSS region transcription start site region 135428
Tssr132195 15 80235495 to 80235517 22 + TSS region transcription start site region 132195
Tssr132196 15 80235573 to 80235594 21 + TSS region transcription start site region 132196
D15Mit261 15 80236267 to 80236391 124 DNA segment DNA Segment, Chr 15 Massachusetts Institute of Technology 261
Tssr135429 15 80239873 to 80239885 12 - TSS region transcription start site region 135429
Tssr135430 15 80239890 to 80239901 11 - TSS region transcription start site region 135430
Tssr132197 15 80242572 to 80242576 4 + TSS region transcription start site region 132197
Tssr132198 15 80250383 to 80250387 4 + TSS region transcription start site region 132198
Cpgi7369 15 80254826 to 80256353 1527 CpG island CpG island 7369
Tssr135431 15 80254963 to 80255000 37 - TSS region transcription start site region 135431
Tssr135432 15 80255006 to 80255018 12 - TSS region transcription start site region 135432
Tssr132199 15 80255170 to 80255181 11 + TSS region transcription start site region 132199
Atf4 15 80255184 to 80257541 2357 + protein coding gene activating transcription factor 4
Tssr132200 15 80255248 to 80255263 15 + TSS region transcription start site region 132200
Tssr132201 15 80255301 to 80255321 20 + TSS region transcription start site region 132201
Tssr132202 15 80255490 to 80255511 21 + TSS region transcription start site region 132202
Tssr135433 15 80255845 to 80255864 19 - TSS region transcription start site region 135433
Tssr132203 15 80256017 to 80256078 61 + TSS region transcription start site region 132203
Tssr132204 15 80256337 to 80256349 12 + TSS region transcription start site region 132204
Tssr132205 15 80256904 to 80256920 16 + TSS region transcription start site region 132205
Tssr132206 15 80257082 to 80257135 53 + TSS region transcription start site region 132206
Tssr132207 15 80257165 to 80257186 21 + TSS region transcription start site region 132207
Tssr135434 15 80257533 to 80257541 8 - TSS region transcription start site region 135434
Rps19bp1 15 80260614 to 80264306 3692 - protein coding gene ribosomal protein S19 binding protein 1
Cpgi7370 15 80263683 to 80264549 866 CpG island CpG island 7370
Tssr135435 15 80264276 to 80264322 46 - TSS region transcription start site region 135435
Faq9 15 80279702 to 80279794 92 QTL fluctuating asymmetry QTL 9
D15Mit2 15 80279702 to 80279794 92 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 2
Cpgi7371 15 80286715 to 80288417 1702 CpG island CpG island 7371
Tssr132208 15 80287234 to 80287252 18 + TSS region transcription start site region 132208
Cacna1i 15 80287238 to 80398279 111041 + protein coding gene calcium channel, voltage-dependent, alpha 1I subunit
Tssr132209 15 80287269 to 80287293 24 + TSS region transcription start site region 132209
Tssr132210 15 80287301 to 80287313 12 + TSS region transcription start site region 132210
Tssr132211 15 80287509 to 80287535 26 + TSS region transcription start site region 132211
Gm31319 15 80287868 to 80292521 4653 - lncRNA gene predicted gene, 31319