Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:79227315-80557349

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401 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cocia2 15 72500610 to 80014977 7514367 QTL cocaine induced activation 2
Gm30527 15 79225254 to 79229022 3768 - lncRNA gene predicted gene, 30527
4930500E03Rik 15 79228202 to 79229364 1162 unclassified gene RIKEN cDNA 4930500E03 gene
Cpgi7322 15 79229083 to 79229802 719 CpG island CpG island 7322
Tssr132078 15 79229140 to 79229162 22 + TSS region transcription start site region 132078
Pick1 15 79229160 to 79249466 20306 + protein coding gene protein interacting with C kinase 1
Tssr132079 15 79229363 to 79229439 76 + TSS region transcription start site region 132079
Gm49486 15 79229391 to 79256674 27283 + protein coding gene predicted gene, 49486
Tssr132080 15 79229449 to 79229460 11 + TSS region transcription start site region 132080
Tssr132081 15 79247150 to 79247152 2 + TSS region transcription start site region 132081
Slc16a8 15 79251016 to 79254748 3732 - protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 8
Cpgi7323 15 79251486 to 79253010 1524 CpG island CpG island 7323
Cpgi7324 15 79253565 to 79253743 178 CpG island CpG island 7324
Tssr135318 15 79254737 to 79254764 27 - TSS region transcription start site region 135318
Lgals1-ps2 15 79255574 to 79256092 518 + pseudogene lectin, galactose binding, soluble 1, pseudogene 2
Baiap2l2 15 79258195 to 79285532 27337 - protein coding gene BAI1-associated protein 2-like 2
Cpgi7325 15 79258560 to 79258740 180 CpG island CpG island 7325
Tssr135319 15 79258614 to 79258647 33 - TSS region transcription start site region 135319
Cpgi7326 15 79260773 to 79262193 1420 CpG island CpG island 7326
Tssr135320 15 79261277 to 79261309 32 - TSS region transcription start site region 135320
Tssr135321 15 79265783 to 79265792 9 - TSS region transcription start site region 135321
D15Mit238 15 79269828 to 79269948 120 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 238
Cpgi7327 15 79270363 to 79270757 394 CpG island CpG island 7327
Cpgi7328 15 79271152 to 79271339 187 CpG island CpG island 7328
Tssr135322 15 79283534 to 79283582 48 - TSS region transcription start site region 135322
Tssr135323 15 79285420 to 79285435 15 - TSS region transcription start site region 135323
Tssr135324 15 79285450 to 79285465 15 - TSS region transcription start site region 135324
Tssr135325 15 79285470 to 79285498 28 - TSS region transcription start site region 135325
Tssr135326 15 79285502 to 79285516 14 - TSS region transcription start site region 135326
Pla2g6 15 79286228 to 79328390 42162 - protein coding gene phospholipase A2, group VI
Gm41358 15 79310515 to 79311388 873 + lncRNA gene predicted gene, 41358
Gm20420 15 79314196 to 79316658 2462 + antisense lncRNA gene predicted gene 20420
Tssr135327 15 79323335 to 79323349 14 - TSS region transcription start site region 135327
Tssr132082 15 79327583 to 79327594 11 + TSS region transcription start site region 132082
2310026G15Rik 15 79327626 to 79328715 1089 unclassified gene RIKEN cDNA 2310026G15 gene
Cpgi7329 15 79327799 to 79328538 739 CpG island CpG island 7329
Tssr135328 15 79328126 to 79328150 24 - TSS region transcription start site region 135328
Tssr135329 15 79328154 to 79328191 37 - TSS region transcription start site region 135329
Tssr135330 15 79328201 to 79328261 60 - TSS region transcription start site region 135330
Tssr135331 15 79334356 to 79334357 1 - TSS region transcription start site region 135331
Tssr132083 15 79346608 to 79346617 9 + TSS region transcription start site region 132083
Maff 15 79346621 to 79359076 12455 + protein coding gene v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)
Cpgi7330 15 79346989 to 79348612 1623 CpG island CpG island 7330
Tssr132084 15 79347534 to 79347556 22 + TSS region transcription start site region 132084
Tssr132085 15 79347567 to 79347578 11 + TSS region transcription start site region 132085
Tssr132086 15 79347583 to 79347598 15 + TSS region transcription start site region 132086
Tssr132087 15 79347599 to 79347614 15 + TSS region transcription start site region 132087
Tssr132088 15 79347630 to 79347644 14 + TSS region transcription start site region 132088
Tssr132089 15 79347937 to 79348030 93 + TSS region transcription start site region 132089
Tssr132090 15 79348129 to 79348154 25 + TSS region transcription start site region 132090
Tssr135332 15 79348185 to 79348207 22 - TSS region transcription start site region 135332
Tssr132091 15 79348391 to 79348407 16 + TSS region transcription start site region 132091
Tssr132092 15 79348421 to 79348432 11 + TSS region transcription start site region 132092
Cpgi7331 15 79356992 to 79358584 1592 CpG island CpG island 7331
Tssr135333 15 79357711 to 79357724 13 - TSS region transcription start site region 135333
Tssr135334 15 79357734 to 79357751 17 - TSS region transcription start site region 135334
Tssr135335 15 79357789 to 79357800 11 - TSS region transcription start site region 135335
Tssr132093 15 79357859 to 79357870 11 + TSS region transcription start site region 132093
Tssr132094 15 79358390 to 79358395 5 + TSS region transcription start site region 132094
Tssr132095 15 79358440 to 79358453 13 + TSS region transcription start site region 132095
Tmem184b 15 79360684 to 79403303 42619 - protein coding gene transmembrane protein 184b
Mir1943 15 79375228 to 79375300 72 - miRNA gene microRNA 1943
Tssr135336 15 79378598 to 79378645 47 - TSS region transcription start site region 135336
Tssr135337 15 79396821 to 79396844 23 - TSS region transcription start site region 135337
Tssr135338 15 79396862 to 79396879 17 - TSS region transcription start site region 135338
Cpgi7332 15 79402473 to 79403816 1343 CpG island CpG island 7332
Tssr135339 15 79403236 to 79403245 9 - TSS region transcription start site region 135339
Tssr135340 15 79403248 to 79403309 61 - TSS region transcription start site region 135340
Tssr135341 15 79403547 to 79403578 31 - TSS region transcription start site region 135341
Tssr135342 15 79414681 to 79414683 2 - TSS region transcription start site region 135342
Tssr135343 15 79414715 to 79414755 40 - TSS region transcription start site region 135343
Tssr4655 15 79414831 to 79414857 26 + TSS region transcription start site region 4655
Csnk1e 15 79417856 to 79455566 37710 - protein coding gene casein kinase 1, epsilon
Gm16059 15 79427220 to 79431629 4409 + antisense lncRNA gene predicted gene 16059
Tssr132096 15 79428980 to 79428987 7 + TSS region transcription start site region 132096
Tssr135344 15 79429854 to 79429859 5 - TSS region transcription start site region 135344
Cpgi7333 15 79433097 to 79433391 294 CpG island CpG island 7333
Cpgi7334 15 79441225 to 79442636 1411 CpG island CpG island 7334
Tssr135345 15 79441802 to 79441860 58 - TSS region transcription start site region 135345
Tssr135346 15 79442009 to 79442065 56 - TSS region transcription start site region 135346
Tssr135347 15 79442072 to 79442106 34 - TSS region transcription start site region 135347
Tssr135348 15 79442110 to 79442124 14 - TSS region transcription start site region 135348
Cpgi7335 15 79455489 to 79455700 211 CpG island CpG island 7335
Tssr135349 15 79455528 to 79455560 32 - TSS region transcription start site region 135349
Gm41359 15 79459764 to 79466151 6387 - lncRNA gene predicted gene, 41359
Gm44302 15 79472381 to 79472471 90 + miRNA gene predicted gene, 44302
Gm49593 15 79480227 to 79482674 2447 - unclassified gene predicted gene, 49593
Kcnj4 15 79483714 to 79505241 21527 - protein coding gene potassium inwardly-rectifying channel, subfamily J, member 4
Cpgi7336 15 79493637 to 79493963 326 CpG island CpG island 7336
Cpgi7337 15 79504807 to 79506307 1500 CpG island CpG island 7337
Tssr135350 15 79505810 to 79505831 21 - TSS region transcription start site region 135350
Gm49552 15 79510325 to 79512517 2192 + unclassified gene predicted gene, 49552
Cpgi7338 15 79511325 to 79512128 803 CpG island CpG island 7338
Cpgi7339 15 79515983 to 79517150 1167 CpG island CpG island 7339
Tssr132097 15 79516396 to 79516487 91 + TSS region transcription start site region 132097
Kdelr3 15 79516411 to 79527739 11328 + protein coding gene KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3
Tssr132098 15 79516489 to 79516506 17 + TSS region transcription start site region 132098
Tssr132099 15 79519809 to 79519813 4 + TSS region transcription start site region 132099
Ddx17 15 79527736 to 79546741 19005 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
Tssr132100 15 79527737 to 79527745 8 + TSS region transcription start site region 132100
Tssr135351 15 79529657 to 79529661 4 - TSS region transcription start site region 135351
Tssr132101 15 79533833 to 79533848 15 + TSS region transcription start site region 132101
Tssr135352 15 79534201 to 79534209 8 - TSS region transcription start site region 135352
Tssr135353 15 79534363 to 79534382 19 - TSS region transcription start site region 135353
Tssr135354 15 79545739 to 79545743 4 - TSS region transcription start site region 135354
Cpgi7340 15 79545933 to 79547432 1499 CpG island CpG island 7340
Tssr135355 15 79546270 to 79546273 3 - TSS region transcription start site region 135355
Tssr135356 15 79546447 to 79546458 11 - TSS region transcription start site region 135356
Tssr135357 15 79546541 to 79546566 25 - TSS region transcription start site region 135357
Tssr135358 15 79546579 to 79546588 9 - TSS region transcription start site region 135358
Tssr135359 15 79546745 to 79546787 42 - TSS region transcription start site region 135359
Tssr132102 15 79546854 to 79546912 58 + TSS region transcription start site region 132102
Dmc1 15 79561497 to 79605109 43612 - protein coding gene DNA meiotic recombinase 1
D15Mit259 15 79563697 to 79563777 80 DNA segment DNA Segment, Chr 15 Massachusetts Institute of Technology 259
D15Mit71 15 79590436 to 79590561 125 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 71
Rapop5 15 79590561 to 9272936 -70317625 QTL radiation-induced apoptosis 5
Gm27903 15 79594668 to 79594793 125 - miRNA gene predicted gene, 27903
Cpgi7341 15 79604483 to 79605472 989 CpG island CpG island 7341
Tssr135360 15 79605086 to 79605114 28 - TSS region transcription start site region 135360
Fam227a 15 79609576 to 79658956 49380 - protein coding gene family with sequence similarity 227, member A
Tssr135361 15 79620761 to 79620780 19 - TSS region transcription start site region 135361
Cpgi7342 15 79658560 to 79659468 908 CpG island CpG island 7342
Tssr135362 15 79658789 to 79658798 9 - TSS region transcription start site region 135362
Tssr135363 15 79658854 to 79658888 34 - TSS region transcription start site region 135363
Tssr135364 15 79658889 to 79658933 44 - TSS region transcription start site region 135364
Tssr132103 15 79659188 to 79659194 6 + TSS region transcription start site region 132103
Tssr132104 15 79659196 to 79659267 71 + TSS region transcription start site region 132104
Cby1 15 79659199 to 79667660 8461 + protein coding gene chibby family member 1, beta catenin antagonist
Gm30877 15 79665768 to 79666993 1225 - lncRNA gene predicted gene, 30877
Tssr132105 15 79668541 to 79668546 5 + TSS region transcription start site region 132105
Cpgi7343 15 79670653 to 79671439 786 CpG island CpG island 7343
Tssr132106 15 79670856 to 79670888 32 + TSS region transcription start site region 132106
Tomm22 15 79670868 to 79672862 1994 + protein coding gene translocase of outer mitochondrial membrane 22
Tssr132107 15 79671073 to 79671133 60 + TSS region transcription start site region 132107
Tssr132108 15 79671136 to 79671148 12 + TSS region transcription start site region 132108
Josd1 15 79674250 to 79687872 13622 - protein coding gene Josephin domain containing 1
Gm49520 15 79681102 to 79681322 220 - pseudogene predicted gene, 49520
Cpgi7344 15 79686841 to 79688236 1395 CpG island CpG island 7344
Tssr135365 15 79687744 to 79687756 12 - TSS region transcription start site region 135365
Tssr135366 15 79687776 to 79687894 118 - TSS region transcription start site region 135366
Tssr132109 15 79687927 to 79687949 22 + TSS region transcription start site region 132109
Tssr132110 15 79687966 to 79687993 27 + TSS region transcription start site region 132110
Tssr132111 15 79687996 to 79688013 17 + TSS region transcription start site region 132111
Gm26884 15 79689140 to 79692385 3245 - lincRNA gene predicted gene, 26884
Cpgi7345 15 79690287 to 79691787 1500 CpG island CpG island 7345
Tssr132112 15 79690869 to 79690905 36 + TSS region transcription start site region 132112
Gtpbp1 15 79690896 to 79721479 30583 + protein coding gene GTP binding protein 1
Tssr132113 15 79690921 to 79690924 3 + TSS region transcription start site region 132113
n-R5s40 15 79692502 to 79692625 123 + rRNA gene nuclear encoded rRNA 5S 40
Tssr132114 15 79693950 to 79693971 21 + TSS region transcription start site region 132114
Cpgi7346 15 79706988 to 79707146 158 CpG island CpG island 7346
Sun2 15 79724070 to 79742536 18466 - protein coding gene Sad1 and UNC84 domain containing 2
Tssr135367 15 79729124 to 79729133 9 - TSS region transcription start site region 135367
Tssr135368 15 79733750 to 79733760 10 - TSS region transcription start site region 135368
Tssr132115 15 79733965 to 79733968 3 + TSS region transcription start site region 132115
Tssr135369 15 79734365 to 79734401 36 - TSS region transcription start site region 135369
Tssr135370 15 79735969 to 79735984 15 - TSS region transcription start site region 135370
Tssr135371 15 79739006 to 79739018 12 - TSS region transcription start site region 135371
Tssr135372 15 79739484 to 79739502 18 - TSS region transcription start site region 135372
Tssr132116 15 79739540 to 79739558 18 + TSS region transcription start site region 132116
Tssr132117 15 79739574 to 79739594 20 + TSS region transcription start site region 132117
Gm16575 15 79739574 to 79741798 2224 + antisense lncRNA gene predicted gene 16575
Tssr132118 15 79739596 to 79739610 14 + TSS region transcription start site region 132118
Tssr4656 15 79739631 to 79739640 9 + TSS region transcription start site region 4656
Tssr135373 15 79741281 to 79741297 16 - TSS region transcription start site region 135373
Tssr135374 15 79741301 to 79741315 14 - TSS region transcription start site region 135374
Tssr135375 15 79741328 to 79741341 13 - TSS region transcription start site region 135375
Tssr135376 15 79741353 to 79741361 8 - TSS region transcription start site region 135376
Cpgi7347 15 79741907 to 79742893 986 CpG island CpG island 7347
Tssr135377 15 79742465 to 79742476 11 - TSS region transcription start site region 135377
Tssr135378 15 79742493 to 79742511 18 - TSS region transcription start site region 135378
Tssr135379 15 79742518 to 79742562 44 - TSS region transcription start site region 135379
Gm16576 15 79742698 to 79757394 14696 + bidirectional promoter lncRNA gene predicted gene 16576
Dnal4 15 79761449 to 79774467 13018 - protein coding gene dynein, axonemal, light chain 4
Tssr4657 15 79761723 to 79761724 1 + TSS region transcription start site region 4657
Tssr4658 15 79768355 to 79768359 4 + TSS region transcription start site region 4658
Cpgi7348 15 79773981 to 79774851 870 CpG island CpG island 7348
Tssr135380 15 79774383 to 79774394 11 - TSS region transcription start site region 135380
Tssr135381 15 79774408 to 79774474 66 - TSS region transcription start site region 135381
Gm30977 15 79774553 to 79794252 19699 + lncRNA gene predicted gene, 30977
Nptxr 15 79786351 to 79804709 18358 - protein coding gene neuronal pentraxin receptor
Tssr135382 15 79786877 to 79786885 8 - TSS region transcription start site region 135382
Tssr135383 15 79789041 to 79789057 16 - TSS region transcription start site region 135383
Tssr135384 15 79789628 to 79789641 13 - TSS region transcription start site region 135384
Npcd 15 79789675 to 79834237 44562 - protein coding gene neuronal pentraxin chromo domain
Tssr135385 15 79790944 to 79790951 7 - TSS region transcription start site region 135385
Cpgi7349 15 79792567 to 79792941 374 CpG island CpG island 7349
Cpgi7350 15 79803486 to 79805450 1964 CpG island CpG island 7350
Tssr135386 15 79804225 to 79804241 16 - TSS region transcription start site region 135386
Tssr135387 15 79804455 to 79804503 48 - TSS region transcription start site region 135387
Tssr135388 15 79804711 to 79804716 5 - TSS region transcription start site region 135388
Tssr135389 15 79804717 to 79804732 15 - TSS region transcription start site region 135389
Cbx6 15 79823898 to 79834333 10435 - protein coding gene chromobox 6
Cpgi7351 15 79828190 to 79829172 982 CpG island CpG island 7351
Cpgi7352 15 79833443 to 79834689 1246 CpG island CpG island 7352
Tssr135390 15 79834208 to 79834219 11 - TSS region transcription start site region 135390
Tssr135391 15 79834224 to 79834245 21 - TSS region transcription start site region 135391
Tssr135392 15 79834261 to 79834285 24 - TSS region transcription start site region 135392
Tssr135393 15 79834288 to 79834314 26 - TSS region transcription start site region 135393
Tssr135394 15 79834323 to 79834334 11 - TSS region transcription start site region 135394