Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:78992966-80382993

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486 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cocia2 15 72500610 to 80014977 7514367 QTL cocaine induced activation 2
Triobp 15 78947724 to 79005869 58145 + protein coding gene TRIO and F-actin binding protein
Gm10865 15 78994955 to 79011041 16086 - antisense lncRNA gene predicted gene 10865
Mir6956 15 79002223 to 79002284 61 + miRNA gene microRNA 6956
Tssr132034 15 79002252 to 79002263 11 + TSS region transcription start site region 132034
Tssr132035 15 79002280 to 79002296 16 + TSS region transcription start site region 132035
Tssr132036 15 79002298 to 79002316 18 + TSS region transcription start site region 132036
Tssr132037 15 79002319 to 79002331 12 + TSS region transcription start site region 132037
Tssr132038 15 79002338 to 79002352 14 + TSS region transcription start site region 132038
Tssr132039 15 79005238 to 79005318 80 + TSS region transcription start site region 132039
Tssr132040 15 79005474 to 79005491 17 + TSS region transcription start site region 132040
D15Mit119 15 79014192 to 79014316 124 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 119
Gm17753 15 79016210 to 79026067 9857 - lincRNA gene predicted gene, 17753
Tssr135301 15 79025864 to 79025867 3 - TSS region transcription start site region 135301
Tssr135302 15 79025914 to 79025926 12 - TSS region transcription start site region 135302
Gm49544 15 79026456 to 79028612 2156 - antisense lncRNA gene predicted gene, 49544
Tssr132041 15 79026991 to 79027005 14 + TSS region transcription start site region 132041
Cpgi7311 15 79027588 to 79029101 1513 CpG island CpG island 7311
Tssr132042 15 79028442 to 79028456 14 + TSS region transcription start site region 132042
H1f0 15 79028450 to 79030504 2054 + protein coding gene H1 histone family, member 0
Tssr132043 15 79028471 to 79028482 11 + TSS region transcription start site region 132043
Tssr132044 15 79028530 to 79028543 13 + TSS region transcription start site region 132044
Tssr135303 15 79028789 to 79028854 65 - TSS region transcription start site region 135303
Tssr135304 15 79028889 to 79028915 26 - TSS region transcription start site region 135304
Tssr135305 15 79029124 to 79029174 50 - TSS region transcription start site region 135305
Tssr132045 15 79029302 to 79029334 32 + TSS region transcription start site region 132045
Cpgi7312 15 79030515 to 79031257 742 CpG island CpG island 7312
Tssr132046 15 79030849 to 79030859 10 + TSS region transcription start site region 132046
Gcat 15 79030874 to 79042531 11657 + protein coding gene glycine C-acetyltransferase (2-amino-3-ketobutyrate-coenzyme A ligase)
Tssr132047 15 79030885 to 79030933 48 + TSS region transcription start site region 132047
Tssr132048 15 79030945 to 79030952 7 + TSS region transcription start site region 132048
Cpgi7313 15 79037708 to 79038113 405 CpG island CpG island 7313
Cpgi7314 15 79040585 to 79040843 258 CpG island CpG island 7314
Galr3 15 79041885 to 79043558 1673 + protein coding gene galanin receptor 3
Cpgi7315 15 79042046 to 79043717 1671 CpG island CpG island 7315
Gm3924 15 79045599 to 79051176 5577 - lincRNA gene predicted gene 3924
Ankrd54 15 79053094 to 79062893 9799 - protein coding gene ankyrin repeat domain 54
Cpgi7316 15 79062226 to 79063234 1008 CpG island CpG island 7316
Tssr135306 15 79062675 to 79062691 16 - TSS region transcription start site region 135306
Tssr135307 15 79062703 to 79062706 3 - TSS region transcription start site region 135307
Tssr135308 15 79062719 to 79062756 37 - TSS region transcription start site region 135308
Tssr135309 15 79062763 to 79062770 7 - TSS region transcription start site region 135309
Tssr135310 15 79062866 to 79062941 75 - TSS region transcription start site region 135310
Gm49471 15 79064661 to 79065948 1287 + unclassified gene predicted gene, 49471
4930563H03Rik 15 79074718 to 79075128 410 unclassified gene RIKEN cDNA 4930563H03 gene
Cpgi7317 15 79075009 to 79075646 637 CpG island CpG island 7317
Tssr132049 15 79075209 to 79075245 36 + TSS region transcription start site region 132049
Eif3l 15 79075223 to 79094400 19177 + protein coding gene eukaryotic translation initiation factor 3, subunit L
Tssr132050 15 79081579 to 79081625 46 + TSS region transcription start site region 132050
Tssr132051 15 79081864 to 79081879 15 + TSS region transcription start site region 132051
Tssr132052 15 79085575 to 79085595 20 + TSS region transcription start site region 132052
Tssr132053 15 79089592 to 79089644 52 + TSS region transcription start site region 132053
Gm25072 15 79094823 to 79095057 234 - unclassified non-coding RNA gene predicted gene, 25072
Cpgi7318 15 79108394 to 79109773 1379 CpG island CpG island 7318
Tssr135311 15 79108604 to 79108625 21 - TSS region transcription start site region 135311
Tssr132054 15 79108728 to 79108780 52 + TSS region transcription start site region 132054
Tssr132055 15 79108868 to 79108885 17 + TSS region transcription start site region 132055
Micall1 15 79108898 to 79136900 28002 + protein coding gene microtubule associated monooxygenase, calponin and LIM domain containing -like 1
Tssr132056 15 79108911 to 79108982 71 + TSS region transcription start site region 132056
Tssr135312 15 79109001 to 79109002 1 - TSS region transcription start site region 135312
Tssr132057 15 79109055 to 79109074 19 + TSS region transcription start site region 132057
Tssr132058 15 79109079 to 79109088 9 + TSS region transcription start site region 132058
Tssr132059 15 79109094 to 79109106 12 + TSS region transcription start site region 132059
Tssr132060 15 79109120 to 79109134 14 + TSS region transcription start site region 132060
Tssr132061 15 79109145 to 79109180 35 + TSS region transcription start site region 132061
Tssr132062 15 79109187 to 79109209 22 + TSS region transcription start site region 132062
Tssr135313 15 79109425 to 79109437 12 - TSS region transcription start site region 135313
Tssr132063 15 79124481 to 79124518 37 + TSS region transcription start site region 132063
Tssr132064 15 79131713 to 79131749 36 + TSS region transcription start site region 132064
1700088E04Rik 15 79134655 to 79141251 6596 - protein coding gene RIKEN cDNA 1700088E04 gene
D15Mit260 15 79135542 to 79135768 226 DNA segment DNA Segment, Chr 15 Massachusetts Institute of Technology 260
Cpgi7319 15 79140803 to 79141647 844 CpG island CpG island 7319
Tssr135314 15 79141197 to 79141268 71 - TSS region transcription start site region 135314
Tssr132065 15 79141310 to 79141321 11 + TSS region transcription start site region 132065
Tssr132066 15 79141324 to 79141358 34 + TSS region transcription start site region 132066
Polr2f 15 79141325 to 79151774 10449 + protein coding gene polymerase (RNA) II (DNA directed) polypeptide F
Tssr132067 15 79141364 to 79141390 26 + TSS region transcription start site region 132067
Tssr132068 15 79144621 to 79144636 15 + TSS region transcription start site region 132068
Sox10 15 79154913 to 79164490 9577 - protein coding gene SRY (sex determining region Y)-box 10
Tssr135315 15 79156533 to 79156546 13 - TSS region transcription start site region 135315
Cpgi7320 15 79162843 to 79164393 1550 CpG island CpG island 7320
Tssr135316 15 79163858 to 79163869 11 - TSS region transcription start site region 135316
Tssr135317 15 79164477 to 79164496 19 - TSS region transcription start site region 135317
Tssr132069 15 79166034 to 79166063 29 + TSS region transcription start site region 132069
Gm10863 15 79166066 to 79216401 50335 + lncRNA gene predicted gene 10863
Tssr132070 15 79208977 to 79209012 35 + TSS region transcription start site region 132070
Cpgi7321 15 79209088 to 79209430 342 CpG island CpG island 7321
Tssr132071 15 79209206 to 79209239 33 + TSS region transcription start site region 132071
Tssr132072 15 79209243 to 79209263 20 + TSS region transcription start site region 132072
Tssr132073 15 79209279 to 79209294 15 + TSS region transcription start site region 132073
Tssr132074 15 79209305 to 79209317 12 + TSS region transcription start site region 132074
Tssr132075 15 79209354 to 79209376 22 + TSS region transcription start site region 132075
Tssr132076 15 79209383 to 79209412 29 + TSS region transcription start site region 132076
Tssr132077 15 79212756 to 79212766 10 + TSS region transcription start site region 132077
Gm30527 15 79225254 to 79229022 3768 - lncRNA gene predicted gene, 30527
4930500E03Rik 15 79228202 to 79229364 1162 unclassified gene RIKEN cDNA 4930500E03 gene
Cpgi7322 15 79229083 to 79229802 719 CpG island CpG island 7322
Tssr132078 15 79229140 to 79229162 22 + TSS region transcription start site region 132078
Pick1 15 79229160 to 79249466 20306 + protein coding gene protein interacting with C kinase 1
Tssr132079 15 79229363 to 79229439 76 + TSS region transcription start site region 132079
Gm49486 15 79229391 to 79256674 27283 + protein coding gene predicted gene, 49486
Tssr132080 15 79229449 to 79229460 11 + TSS region transcription start site region 132080
Tssr132081 15 79247150 to 79247152 2 + TSS region transcription start site region 132081
Slc16a8 15 79251016 to 79254748 3732 - protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 8
Cpgi7323 15 79251486 to 79253010 1524 CpG island CpG island 7323
Cpgi7324 15 79253565 to 79253743 178 CpG island CpG island 7324
Tssr135318 15 79254737 to 79254764 27 - TSS region transcription start site region 135318
Lgals1-ps2 15 79255574 to 79256092 518 + pseudogene lectin, galactose binding, soluble 1, pseudogene 2
Baiap2l2 15 79258195 to 79285532 27337 - protein coding gene BAI1-associated protein 2-like 2
Cpgi7325 15 79258560 to 79258740 180 CpG island CpG island 7325
Tssr135319 15 79258614 to 79258647 33 - TSS region transcription start site region 135319
Cpgi7326 15 79260773 to 79262193 1420 CpG island CpG island 7326
Tssr135320 15 79261277 to 79261309 32 - TSS region transcription start site region 135320
Tssr135321 15 79265783 to 79265792 9 - TSS region transcription start site region 135321
D15Mit238 15 79269828 to 79269948 120 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 238
Cpgi7327 15 79270363 to 79270757 394 CpG island CpG island 7327
Cpgi7328 15 79271152 to 79271339 187 CpG island CpG island 7328
Tssr135322 15 79283534 to 79283582 48 - TSS region transcription start site region 135322
Tssr135323 15 79285420 to 79285435 15 - TSS region transcription start site region 135323
Tssr135324 15 79285450 to 79285465 15 - TSS region transcription start site region 135324
Tssr135325 15 79285470 to 79285498 28 - TSS region transcription start site region 135325
Tssr135326 15 79285502 to 79285516 14 - TSS region transcription start site region 135326
Pla2g6 15 79286228 to 79328390 42162 - protein coding gene phospholipase A2, group VI
Gm41358 15 79310515 to 79311388 873 + lncRNA gene predicted gene, 41358
Gm20420 15 79314196 to 79316658 2462 + antisense lncRNA gene predicted gene 20420
Tssr135327 15 79323335 to 79323349 14 - TSS region transcription start site region 135327
Tssr132082 15 79327583 to 79327594 11 + TSS region transcription start site region 132082
2310026G15Rik 15 79327626 to 79328715 1089 unclassified gene RIKEN cDNA 2310026G15 gene
Cpgi7329 15 79327799 to 79328538 739 CpG island CpG island 7329
Tssr135328 15 79328126 to 79328150 24 - TSS region transcription start site region 135328
Tssr135329 15 79328154 to 79328191 37 - TSS region transcription start site region 135329
Tssr135330 15 79328201 to 79328261 60 - TSS region transcription start site region 135330
Tssr135331 15 79334356 to 79334357 1 - TSS region transcription start site region 135331
Tssr132083 15 79346608 to 79346617 9 + TSS region transcription start site region 132083
Maff 15 79346621 to 79359076 12455 + protein coding gene v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)
Cpgi7330 15 79346989 to 79348612 1623 CpG island CpG island 7330
Tssr132084 15 79347534 to 79347556 22 + TSS region transcription start site region 132084
Tssr132085 15 79347567 to 79347578 11 + TSS region transcription start site region 132085
Tssr132086 15 79347583 to 79347598 15 + TSS region transcription start site region 132086
Tssr132087 15 79347599 to 79347614 15 + TSS region transcription start site region 132087
Tssr132088 15 79347630 to 79347644 14 + TSS region transcription start site region 132088
Tssr132089 15 79347937 to 79348030 93 + TSS region transcription start site region 132089
Tssr132090 15 79348129 to 79348154 25 + TSS region transcription start site region 132090
Tssr135332 15 79348185 to 79348207 22 - TSS region transcription start site region 135332
Tssr132091 15 79348391 to 79348407 16 + TSS region transcription start site region 132091
Tssr132092 15 79348421 to 79348432 11 + TSS region transcription start site region 132092
Cpgi7331 15 79356992 to 79358584 1592 CpG island CpG island 7331
Tssr135333 15 79357711 to 79357724 13 - TSS region transcription start site region 135333
Tssr135334 15 79357734 to 79357751 17 - TSS region transcription start site region 135334
Tssr135335 15 79357789 to 79357800 11 - TSS region transcription start site region 135335
Tssr132093 15 79357859 to 79357870 11 + TSS region transcription start site region 132093
Tssr132094 15 79358390 to 79358395 5 + TSS region transcription start site region 132094
Tssr132095 15 79358440 to 79358453 13 + TSS region transcription start site region 132095
Tmem184b 15 79360684 to 79403303 42619 - protein coding gene transmembrane protein 184b
Mir1943 15 79375228 to 79375300 72 - miRNA gene microRNA 1943
Tssr135336 15 79378598 to 79378645 47 - TSS region transcription start site region 135336
Tssr135337 15 79396821 to 79396844 23 - TSS region transcription start site region 135337
Tssr135338 15 79396862 to 79396879 17 - TSS region transcription start site region 135338
Cpgi7332 15 79402473 to 79403816 1343 CpG island CpG island 7332
Tssr135339 15 79403236 to 79403245 9 - TSS region transcription start site region 135339
Tssr135340 15 79403248 to 79403309 61 - TSS region transcription start site region 135340
Tssr135341 15 79403547 to 79403578 31 - TSS region transcription start site region 135341
Tssr135342 15 79414681 to 79414683 2 - TSS region transcription start site region 135342
Tssr135343 15 79414715 to 79414755 40 - TSS region transcription start site region 135343
Tssr4655 15 79414831 to 79414857 26 + TSS region transcription start site region 4655
Csnk1e 15 79417856 to 79455566 37710 - protein coding gene casein kinase 1, epsilon
Gm16059 15 79427220 to 79431629 4409 + antisense lncRNA gene predicted gene 16059
Tssr132096 15 79428980 to 79428987 7 + TSS region transcription start site region 132096
Tssr135344 15 79429854 to 79429859 5 - TSS region transcription start site region 135344
Cpgi7333 15 79433097 to 79433391 294 CpG island CpG island 7333
Cpgi7334 15 79441225 to 79442636 1411 CpG island CpG island 7334
Tssr135345 15 79441802 to 79441860 58 - TSS region transcription start site region 135345
Tssr135346 15 79442009 to 79442065 56 - TSS region transcription start site region 135346
Tssr135347 15 79442072 to 79442106 34 - TSS region transcription start site region 135347
Tssr135348 15 79442110 to 79442124 14 - TSS region transcription start site region 135348
Cpgi7335 15 79455489 to 79455700 211 CpG island CpG island 7335
Tssr135349 15 79455528 to 79455560 32 - TSS region transcription start site region 135349
Gm41359 15 79459764 to 79466151 6387 - lncRNA gene predicted gene, 41359
Gm44302 15 79472381 to 79472471 90 + miRNA gene predicted gene, 44302
Gm49593 15 79480227 to 79482674 2447 - unclassified gene predicted gene, 49593
Kcnj4 15 79483714 to 79505241 21527 - protein coding gene potassium inwardly-rectifying channel, subfamily J, member 4
Cpgi7336 15 79493637 to 79493963 326 CpG island CpG island 7336
Cpgi7337 15 79504807 to 79506307 1500 CpG island CpG island 7337
Tssr135350 15 79505810 to 79505831 21 - TSS region transcription start site region 135350
Gm49552 15 79510325 to 79512517 2192 + unclassified gene predicted gene, 49552
Cpgi7338 15 79511325 to 79512128 803 CpG island CpG island 7338
Cpgi7339 15 79515983 to 79517150 1167 CpG island CpG island 7339
Tssr132097 15 79516396 to 79516487 91 + TSS region transcription start site region 132097
Kdelr3 15 79516411 to 79527739 11328 + protein coding gene KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3
Tssr132098 15 79516489 to 79516506 17 + TSS region transcription start site region 132098
Tssr132099 15 79519809 to 79519813 4 + TSS region transcription start site region 132099
Ddx17 15 79527736 to 79546741 19005 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
Tssr132100 15 79527737 to 79527745 8 + TSS region transcription start site region 132100
Tssr135351 15 79529657 to 79529661 4 - TSS region transcription start site region 135351
Tssr132101 15 79533833 to 79533848 15 + TSS region transcription start site region 132101
Tssr135352 15 79534201 to 79534209 8 - TSS region transcription start site region 135352
Tssr135353 15 79534363 to 79534382 19 - TSS region transcription start site region 135353
Tssr135354 15 79545739 to 79545743 4 - TSS region transcription start site region 135354
Cpgi7340 15 79545933 to 79547432 1499 CpG island CpG island 7340
Tssr135355 15 79546270 to 79546273 3 - TSS region transcription start site region 135355