Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:78907083-79067103

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm49510 15 78899667 to 78919032 19365 + protein coding gene predicted gene, 49510
Sh3bp1 15 78899768 to 78912051 12283 + protein coding gene SH3-domain binding protein 1
Tssr132009 15 78908425 to 78908470 45 + TSS region transcription start site region 132009
Tssr132010 15 78911488 to 78911516 28 + TSS region transcription start site region 132010
1700027A07Rik 15 78911966 to 78913660 1694 - antisense lncRNA gene RIKEN cDNA 1700027A07 gene
Cpgi7305 15 78913312 to 78914887 1575 CpG island CpG island 7305
Tssr132011 15 78913907 to 78913910 3 + TSS region transcription start site region 132011
Tssr132012 15 78913916 to 78913927 11 + TSS region transcription start site region 132012
Pdxp 15 78913919 to 78919517 5598 + protein coding gene pyridoxal (pyridoxine, vitamin B6) phosphatase
Tssr132013 15 78913931 to 78913966 35 + TSS region transcription start site region 132013
Tssr132014 15 78914370 to 78914406 36 + TSS region transcription start site region 132014
Tssr132015 15 78914408 to 78914475 67 + TSS region transcription start site region 132015
Gm30368 15 78919620 to 78928144 8524 - lncRNA gene predicted gene, 30368
Tssr135298 15 78924989 to 78924991 2 - TSS region transcription start site region 135298
Tssr132016 15 78926720 to 78926735 15 + TSS region transcription start site region 132016
Lgals1 15 78926725 to 78930465 3740 + protein coding gene lectin, galactose binding, soluble 1
Tssr135299 15 78927258 to 78927269 11 - TSS region transcription start site region 135299
Cpgi7306 15 78927941 to 78928305 364 CpG island CpG island 7306
Tssr132017 15 78928368 to 78928399 31 + TSS region transcription start site region 132017
Tssr132018 15 78929176 to 78929208 32 + TSS region transcription start site region 132018
Tssr132019 15 78929644 to 78929686 42 + TSS region transcription start site region 132019
Tssr135300 15 78929734 to 78929748 14 - TSS region transcription start site region 135300
Tssr132020 15 78930151 to 78930170 19 + TSS region transcription start site region 132020
Cpgi7307 15 78934781 to 78935518 737 CpG island CpG island 7307
Tssr132021 15 78934919 to 78934992 73 + TSS region transcription start site region 132021
Nol12 15 78934933 to 78941910 6977 + protein coding gene nucleolar protein 12
Tssr132022 15 78935177 to 78935221 44 + TSS region transcription start site region 132022
Cpgi7308 15 78947640 to 78948145 505 CpG island CpG island 7308
Triobp 15 78947724 to 79005869 58145 + protein coding gene TRIO and F-actin binding protein
Tssr132023 15 78947890 to 78947897 7 + TSS region transcription start site region 132023
Tssr132024 15 78947911 to 78947934 23 + TSS region transcription start site region 132024
Tssr132025 15 78947937 to 78947946 9 + TSS region transcription start site region 132025
Tssr132026 15 78947947 to 78947960 13 + TSS region transcription start site region 132026
Tssr4653 15 78959928 to 78959939 11 + TSS region transcription start site region 4653
Tssr132027 15 78959942 to 78959962 20 + TSS region transcription start site region 132027
Tssr132028 15 78967332 to 78967335 3 + TSS region transcription start site region 132028
Tssr132029 15 78967497 to 78967500 3 + TSS region transcription start site region 132029
Cpgi7309 15 78967620 to 78968195 575 CpG island CpG island 7309
Tssr4654 15 78973055 to 78973063 8 + TSS region transcription start site region 4654
Cpgi7310 15 78982496 to 78983632 1136 CpG island CpG island 7310
Tssr132030 15 78983048 to 78983120 72 + TSS region transcription start site region 132030
Tssr132031 15 78987083 to 78987103 20 + TSS region transcription start site region 132031
Tssr132032 15 78987104 to 78987120 16 + TSS region transcription start site region 132032
Tssr132033 15 78987127 to 78987137 10 + TSS region transcription start site region 132033
Gm10865 15 78994955 to 79011041 16086 - antisense lncRNA gene predicted gene 10865
Mir6956 15 79002223 to 79002284 61 + miRNA gene microRNA 6956
Tssr132034 15 79002252 to 79002263 11 + TSS region transcription start site region 132034
Tssr132035 15 79002280 to 79002296 16 + TSS region transcription start site region 132035
Tssr132036 15 79002298 to 79002316 18 + TSS region transcription start site region 132036
Tssr132037 15 79002319 to 79002331 12 + TSS region transcription start site region 132037
Tssr132038 15 79002338 to 79002352 14 + TSS region transcription start site region 132038
Tssr132039 15 79005238 to 79005318 80 + TSS region transcription start site region 132039
Tssr132040 15 79005474 to 79005491 17 + TSS region transcription start site region 132040
D15Mit119 15 79014192 to 79014316 124 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 119
Gm17753 15 79016210 to 79026067 9857 - lincRNA gene predicted gene, 17753
Tssr135301 15 79025864 to 79025867 3 - TSS region transcription start site region 135301
Tssr135302 15 79025914 to 79025926 12 - TSS region transcription start site region 135302
Gm49544 15 79026456 to 79028612 2156 - antisense lncRNA gene predicted gene, 49544
Tssr132041 15 79026991 to 79027005 14 + TSS region transcription start site region 132041
Cpgi7311 15 79027588 to 79029101 1513 CpG island CpG island 7311
Tssr132042 15 79028442 to 79028456 14 + TSS region transcription start site region 132042
H1f0 15 79028450 to 79030504 2054 + protein coding gene H1 histone family, member 0
Tssr132043 15 79028471 to 79028482 11 + TSS region transcription start site region 132043
Tssr132044 15 79028530 to 79028543 13 + TSS region transcription start site region 132044
Tssr135303 15 79028789 to 79028854 65 - TSS region transcription start site region 135303
Tssr135304 15 79028889 to 79028915 26 - TSS region transcription start site region 135304
Tssr135305 15 79029124 to 79029174 50 - TSS region transcription start site region 135305
Tssr132045 15 79029302 to 79029334 32 + TSS region transcription start site region 132045
Cpgi7312 15 79030515 to 79031257 742 CpG island CpG island 7312
Tssr132046 15 79030849 to 79030859 10 + TSS region transcription start site region 132046
Gcat 15 79030874 to 79042531 11657 + protein coding gene glycine C-acetyltransferase (2-amino-3-ketobutyrate-coenzyme A ligase)
Tssr132047 15 79030885 to 79030933 48 + TSS region transcription start site region 132047
Tssr132048 15 79030945 to 79030952 7 + TSS region transcription start site region 132048
Cpgi7313 15 79037708 to 79038113 405 CpG island CpG island 7313
Cpgi7314 15 79040585 to 79040843 258 CpG island CpG island 7314
Galr3 15 79041885 to 79043558 1673 + protein coding gene galanin receptor 3
Cpgi7315 15 79042046 to 79043717 1671 CpG island CpG island 7315
Gm3924 15 79045599 to 79051176 5577 - lincRNA gene predicted gene 3924
Ankrd54 15 79053094 to 79062893 9799 - protein coding gene ankyrin repeat domain 54
Cpgi7316 15 79062226 to 79063234 1008 CpG island CpG island 7316
Tssr135306 15 79062675 to 79062691 16 - TSS region transcription start site region 135306
Tssr135307 15 79062703 to 79062706 3 - TSS region transcription start site region 135307
Tssr135308 15 79062719 to 79062756 37 - TSS region transcription start site region 135308
Tssr135309 15 79062763 to 79062770 7 - TSS region transcription start site region 135309
Tssr135310 15 79062866 to 79062941 75 - TSS region transcription start site region 135310
Gm49471 15 79064661 to 79065948 1287 + unclassified gene predicted gene, 49471